These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1278 fasta sequence [TTGCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTCCCGTCTCCGCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACTGTCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCCGGCGGCTGCGGCCGTCCTGGCACGGACGCCGCCACCGCCGCCGTTGCTGCCTCGCCGGTCAAGAATGTCAGCGGCGGCGCAAGTGATGCTGCTGCCGCGACCACAGCGGCGCGGTCGCCGGACAACAACGTGAGGGTGCTCATCGGCATCCAGACGCTGCCGAGCAAGTACGAGCGGCGCAACCTGCTGCGGACCATCTACTCGCTCCAGGCCAGGGAGCAGCCGTCCCTCGCCGGCAGCGTCGACGTCCGGTTCGTCTTCTGCAACGTGACGTCCCCCGTCGACGCGGTGCTGGTGTCGCTGGAGGCCATCCGCCACGGCGACATCATCGTCCTCGACTGCGCCGAGAACATGGACAACGGCAAGACGTACACCTTCTTCTCCACCGTGGCGCGCGCCTTCAACTCCAGCGACGGCGAGGGCTCGGGCTCGGGCTCGCCGCCGCCGCCGCGGTACGACTACGTGATGAAGGCCGACGACGACACGTACCTCCGGCTGGCGGCGCTGGTGGAGTCCCTGCGCGGCGCGGCGCGGCGCGACGCGTACTACGGACTCCAGATGCCGTGCGACCGCGAGAACTTCTACCCGTTCCCGCCGTTCATGTCCGGGATGGGGTACGCGCTGTCGTGGGACCTCGTCCAGTGGGTGGCGACGGCGGAGGAGAGCCGGCGCGACCACGTCGGGCCGGAGGACATGTGGACGGGGCGGTGGCTCAACCTCGCCAGCAAGGCCAAGAACCGGTACGACATGTCGCCGCGGATGTACAACTACCGGGGCGCCTCGCCGCCGAGCTGCTTCCGCCGCGACTTCGCCCCGGACACCATCGCCGTCCACATGCTCAAGGACGCCGCCCGCTGGGCCGAGACGCTCCGCTACTTCAACGCCACCGCCGCGCTCCGGCCATCCCACCTCTGAACCGTGTTCTTCTTCTTCGCGCCTTCTCTCTCTCGATCGTTTTCGTGACGGATTCCCGTTGAATTTGGCGGTTGTTGGTTGGTGGCGGGTAGTTGTTGCGCGAAAGCACGGTGGATTGCCCCTGTGTTCCTAGCTGATTTGTTCCAAATTTCTCGAGTTTAAAATAGATATGAAATGGATATTTGTTCGTTAAAAA] [+] EMBL AK064636 [TTGCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTCCCGTCTCCGCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACTGTCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCCGGCGGCTGCGGCCGTCCTGGCACGGACGCCGCCACCGCCGCCGTTGCTGCCTCGCCGGTCAAGAATGTCAGCGGCGGCGCAAGTGATGCTGCTGCCGCGACCACAGCGGCGCGGTCGCCGGACAACAACGTGAGGGTGCTCATCGGCATCCAGACGCTGCCGAGCAAGTACGAGCGGCGCAACCTGCTGCGGACCATCTACTCGCTCCAGGCCAGGGAGCAGCCGTCCCTCGCCGGCAGCGTCGACGTCCGGTTCGTCTTCTGCAACGTGACGTCCCCCGTCGACGCGGTGCTGGTGTCGCTGGAGGCCATCCGCCACGGCGACATCATCGTCCTCGACTGCGCCGAGAACATGGACAACGGCAAGACGTACACCTTCTTCTCCACCGTGGCGCGCGCCTTCAACTCCAGCGACGGCGAGGGCTCGGGCTCGGGCTCGCCGCCGCCGCCGCGGTACGACTACGTGATGAAGGCCGACGACGACACGTACCTCCGGCTGGCGGCGCTGGTGGAGTCCCTGCGCGGCGCGGCGCGGCGCGACGCGTACTACGGACTCCAGATGCCGTGCGACCGCGAGAACTTCTACCCGTTCCCGCCGTTCATGTCCGGGATGGGGTACGCGCTGTCGTGGGACCTCGTCCAGTGGGTGGCGACGGCGGAGGAGAGCCGGCGCGACCACGTCGGGCCGGAGGACATGTGGACGGGGCGGTGGCTCAACCTCGCCAGCAAGGCCAAGAACCGGTACGACATGTCGCCGCGGATGTACAACTACCGGGGCGCCTCGCCGCCGAGCTGCTTCCGCCGCGACTTCGCCCCGGACACCATCGCCGTCCACATGCTCAAGGACGCCGCCCGCTGGGCCGAGACGCTCCGCTACTTCAACGCCACCGCCGCGCTCCGGCCATCCCACCTCTGAACCGTGTTCTTCTTCTTCGCGCCTTCTCTCTCTCGATCGTTTTCGTGACGGATTCCCGTTGAATTTGGCGGTTGTTGGTTGGTGGCGGGTAGTTGTTGCGCGAAAGCACGGTGGATTGCCC ] [+] EMBL OSS1984A [ GCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTCCCGTCTCCGCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACCGTCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCCGGCGGCTGCGGCCGTCCTGGCACGGACGCCGCCACCGCCGCCGTTGCTGCCTCGCCGGTCAAGAATGTCAGCGGCGGCGCAAGTAATGCTGCTGCCGCGACCACGGCGGCGCGGTCGCGGNACAACGACGTGAGGGTGCTCATCGGCATCCAGACGCTGCCGAGCAA ] [+] EMBL AU174242 [ GCGACCACGTCGGGCCGGAGGACATGTGGACGGGGCGGTGGCTCAACCTCGCCAGCAAGGCCAAGAACCGGTACGACATGTCGCCGCGGATGTACAACTACCGGGGCGCCTCGCCGCCGAGCTGCTTCCGCCGCGACTTCGCCCCGGACACCATCGCCGTCCACATGCTCAAGGACGCCGCCCGCTGGGCCGAGACGCTCCGCTACTTCAACGCCACCGCCGCGCTCCGGCCATCCCACCTCTGAACCGTGTTCTTCTTCTTCGCGCCTTCTCTCTCTCGATCGTTTTCGTGACGGATTCCCGTTGAATTTGGCGGTTGTTGGTTGGTGGCGGGTAGTTGTTGCGCGAAAGCACGGTGGATTGCCCCTGTGTTCCTAGCTGATTTGTTCCAAATTTCTCGAGTTTAAAATAGATATGAAATGGATATTTGTTCGTTAAAAA] consensusID : consensus_6797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [GCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTCCCGTCTCNNCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACCGTCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCNGGNGGCTGCGGCCGTCCTGGCACGGACGCCGCCACNNANGCCGTTGCTGCCTCGNCGGTCAAGAATNTNAGCGGCGGCGTAAGTAATGCTGNTGNCGCGACCACGGNGTCGNGGGTTNGCGGGACAACGANGTGAGGGGTGCTCATCGGCATNCAGACGTTGCCGAGCA] [+] EMBL OSS2259A [GCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTCCCGTCTCNNCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACCGTCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCNGGNGGCTGCGGCCGTCCTGGCACGGACGCCGCCACNNANGCCGTTGCTGCCTCGNCGGTCAAGAATNTNAGCGGCGGCGTAAGTAATGCTGNTGNCGCGACCACGGNGTCGNGGGTTNGCGGGACAACGANGTGAGGGGTGCTCATCGGCATNCAGACGTTGCCGAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6797#0 TTGCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTC 60 consensus_6797#1 --GCCGCCATGTCGTCGTCTTCCTCATTGTACAAGCAGCTCGGCCTCGGAGCCGGCTCTC 58 ********************************************************** consensus_6797#0 CCGTCTCCGCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACTG 120 consensus_6797#1 CCGTCTCNNCCTCTCACCTGCTTCTGCTCGTCCTCGGCGCCGGCTTCCTCGCGCTCACCG 118 ******* ************************************************* * consensus_6797#0 TCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCCGGCGGCTGCGGCC 180 consensus_6797#1 TCTTCGTCGTCCACCCCAACGAGTTCCGCATCCAGTCTTTCTTCTCNGGNGGCTGCGGCC 178 ********************************************** ** ********** consensus_6797#0 GTCCTGGCACGGACGCCGCCACCGCCGCCGTTGCTGCCTCGCCGGTCAAGAATGTCAGCG 240 consensus_6797#1 GTCCTGGCACGGACGCCGCCACNNANGCCGTTGCTGCCTCGNCGGTCAAGAATNTNAGCG 238 ********************** *************** *********** * **** consensus_6797#0 GCGGCGCAAGTGATGCTGCTGCCGCGACCACAGCGGCGCGG--TCGCCGGACAACAACGT 298 consensus_6797#1 GCGGCGTAAGTAATGCTGNTGNCGCGACCACGGNGTCGNGGGTTNGCGGGACAACGANGT 298 ****** **** ****** ** ********* * * ** ** * ** ******* * ** consensus_6797#0 GAGGG-TGCTCATCGGCATCCAGACGCTGCCGAGCAAGTACGAGCGGCGCAACCTGCTGC 357 consensus_6797#1 GAGGGGTGCTCATCGGCATNCAGACGTTGCCGAGCA------------------------ 334 ***** ************* ****** ********* consensus_6797#0 GGACCATCTACTCGCTCCAGGCCAGGGAGCAGCCGTCCCTCGCCGGCAGCGTCGACGTCC 417 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 GGTTCGTCTTCTGCAACGTGACGTCCCCCGTCGACGCGGTGCTGGTGTCGCTGGAGGCCA 477 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 TCCGCCACGGCGACATCATCGTCCTCGACTGCGCCGAGAACATGGACAACGGCAAGACGT 537 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 ACACCTTCTTCTCCACCGTGGCGCGCGCCTTCAACTCCAGCGACGGCGAGGGCTCGGGCT 597 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 CGGGCTCGCCGCCGCCGCCGCGGTACGACTACGTGATGAAGGCCGACGACGACACGTACC 657 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 TCCGGCTGGCGGCGCTGGTGGAGTCCCTGCGCGGCGCGGCGCGGCGCGACGCGTACTACG 717 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 GACTCCAGATGCCGTGCGACCGCGAGAACTTCTACCCGTTCCCGCCGTTCATGTCCGGGA 777 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 TGGGGTACGCGCTGTCGTGGGACCTCGTCCAGTGGGTGGCGACGGCGGAGGAGAGCCGGC 837 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 GCGACCACGTCGGGCCGGAGGACATGTGGACGGGGCGGTGGCTCAACCTCGCCAGCAAGG 897 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 CCAAGAACCGGTACGACATGTCGCCGCGGATGTACAACTACCGGGGCGCCTCGCCGCCGA 957 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 GCTGCTTCCGCCGCGACTTCGCCCCGGACACCATCGCCGTCCACATGCTCAAGGACGCCG 1017 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 CCCGCTGGGCCGAGACGCTCCGCTACTTCAACGCCACCGCCGCGCTCCGGCCATCCCACC 1077 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 TCTGAACCGTGTTCTTCTTCTTCGCGCCTTCTCTCTCTCGATCGTTTTCGTGACGGATTC 1137 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 CCGTTGAATTTGGCGGTTGTTGGTTGGTGGCGGGTAGTTGTTGCGCGAAAGCACGGTGGA 1197 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 TTGCCCCTGTGTTCCTAGCTGATTTGTTCCAAATTTCTCGAGTTTAAAATAGATATGAAA 1257 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 TGGATATTTGTTCGTTAAAAA 1278 consensus_6797#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||