cluster # 6798

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Oryza sativa
cluster # 6798 cluster # 6798 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6798#0 length = 613 sequences # 3

consensus_6798#1 length = 295 sequences # 1

consensusID : consensus_6798#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 613
fasta sequence

                              [GACGACGTGCGCCGCCTCTCCGCCTTCTACGACGAGGTGCTCGGCTTCGAGCGGGTCGCCTCCCCGAACTACCCGGCCTTCCAGGTCGCCTGGCTCCGCCTCCCGGGGACGCCCGGCGTCGCGCTCCACATCATCAAGCGCGACCCCGCGGCGGCGCCCGCGGGCGTCGCCCCGGGCGCCTCGGGCGCCCCGCCCGCGCAGCTGCCCAAACACCACCACCTCGCCTTCTCCGTCGCCGACTACGACTGGTTCCTCACCGGGCTGAAGGGCCGGGGCACGGACGTGTTCAACAAGACGCAGCCCGACGGGCGCACGCGCCAGGGCTTCTTC-TTCGACCCCGATGG-GAATGGCCTAGAAGTTACAAGCTCAGGCACAGGCGATATGTAATTGCGGAGCATGATTTGCTTGCTGTAACAGTCGTGC-ATTGGGCGTGGGCTAGCAAACATGGAGACGCA-AACTGCATGTTGTTAGGAACATGTCCATGATATCCCCATGAATAAATTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAATATAGCTCTATATGTTACTGGATTGCACTAAAATATATCTCCAAGTTAAAATGTTTTGCTTCTTAAAAAAAAA]

[+] EMBL CB684606             [GACGACGTGCGCCGCCTCTCCGCCTTCTACGACGAGGTGCTCGGCTTCGAGCGGGTCGCCTCCCCGAACTACCCGGCCTTCCAGGTCGCCTGGCTCCGCCTCCCGGGGACGCCCGGCGTCGCGCTCCACATCATCAAGCGCGACCCCGCGGCGGCGCCCGCGGGCGTCGCCCCGGGCGCCTCGGGCGCCCCGCCCGCGCAGCTGCCCAAACACCACCACCTCGCCTTCTCCGTCGCCGACTACGACTGGTTCCTCACCGGGCTGAAGGGCCGGGGCACGGACGTGTTCAACAAGACGCAGCCCGACGGGCGCACGCGCCAGGGCTTCTTC TTCGACCCCGATGG GAATGGGCTACAAGTTACAACCTCAGGCACAGGCGATATGTAATTGCGGAGCATGATTTGCTTGCTGTAACAGTCGTGC ATTGGGCGTGGGCTAACAAACATGGAGACGCA AACTGCATGTTGTTAGGAACATGTCCATGATATCCCCATGAATAAATTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAATATAGCTCTATATGTTACT                                                      ]
[+] EMBL CB684825             [                                                                                                                                                                                                                                                                                                             CCGACCGGCGCACGCGCCAGGTCTTCTTC TTCGACCCCGATGG CAATGGCCTAGAAGTTACAAGCTCAGGCACAGGCGATATGTAATTGCGGAGCATGATTTGCTTGCTGTAACAGTCGTGC ATTGGGCGTGGGCTAGCAAACATGGAGACGCA AACTGCATGTTGTTAGGAACATGTCCATGATATCCCCATGAATAAATTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAATATAGCTCTATATGTTACTGGATTGCACTAAAATATATCTCCAAGTTAAAATGT                   ]
[+] EMBL BI812695             [                                                                                                                                                                                                                                                                                                                                    tctTTCGTTCGACCCCGATGGCAAATGGCCTAGAAGTTACAAGCTCAGTCACA GCGATATGTAATTGCGGAGCATGATTTGCTTGCTGTAACAGTCGTGCAATTGGGCGTGGGCTAGCCAACATGGAGACGCAGAACTGCATGTTGTTAGGAACATGTCCATGATATCCCCATGAAT AATTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAATATAGCTCTATATGTTACTGGATTGCACT AAATATATCTCCAAGTTAAAATGTTTTGCTTCTTAAAAAAAAA]




>consensus_6798#0
GACGACGTGCGCCGCCTCTCCGCCTTCTACGACGAGGTGCTCGGCTTCGAGCGGGTCGCC
TCCCCGAACTACCCGGCCTTCCAGGTCGCCTGGCTCCGCCTCCCGGGGACGCCCGGCGTC
GCGCTCCACATCATCAAGCGCGACCCCGCGGCGGCGCCCGCGGGCGTCGCCCCGGGCGCC
TCGGGCGCCCCGCCCGCGCAGCTGCCCAAACACCACCACCTCGCCTTCTCCGTCGCCGAC
TACGACTGGTTCCTCACCGGGCTGAAGGGCCGGGGCACGGACGTGTTCAACAAGACGCAG
CCCGACGGGCGCACGCGCCAGGGCTTCTTCTTCGACCCCGATGGGAATGGCCTAGAAGTT
ACAAGCTCAGGCACAGGCGATATGTAATTGCGGAGCATGATTTGCTTGCTGTAACAGTCG
TGCATTGGGCGTGGGCTAGCAAACATGGAGACGCAAACTGCATGTTGTTAGGAACATGTC
CATGATATCCCCATGAATAAATTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAA
TATAGCTCTATATGTTACTGGATTGCACTAAAATATATCTCCAAGTTAAAATGTTTTGCT
TCTTAAAAAAAAA

consensusID : consensus_6798#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [GTGCCCCGCCCGCGCAGCTGCCCAGGGGCCACCACCTCGCTTTTTCGGTCGCCGAATACGACGGGTTCCTCACCGGGTTGAAGGCCCGGGGCACGGAGGTGTTCGAGAAGACTCAGCCCGACGGGCGCACGCGCCAGGTCTTTTTTTTCGACCCCGATGGCAATGGCCTAGAAGTTTCAAGGTCAGGCACAGGCGATATGTAATTGGGGAGCATGATTTACTTGCTGTAACATTCGTCCATTGGTCGTGGGCTAGCAAACACGGAGACCCAAACTGCATGTTTTTATGAACATGT]

[-] EMBL CB684607             [GTGCCCCGCCCGCGCAGCTGCCCAGGGGCCACCACCTCGCTTTTTCGGTCGCCGAATACGACGGGTTCCTCACCGGGTTGAAGGCCCGGGGCACGGAGGTGTTCGAGAAGACTCAGCCCGACGGGCGCACGCGCCAGGTCTTTTTTTTCGACCCCGATGGCAATGGCCTAGAAGTTTCAAGGTCAGGCACAGGCGATATGTAATTGGGGAGCATGATTTACTTGCTGTAACATTCGTCCATTGGTCGTGGGCTAGCAAACACGGAGACCCAAACTGCATGTTTTTATGAACATGT]




>consensus_6798#1
GTGCCCCGCCCGCGCAGCTGCCCAGGGGCCACCACCTCGCTTTTTCGGTCGCCGAATACG
ACGGGTTCCTCACCGGGTTGAAGGCCCGGGGCACGGAGGTGTTCGAGAAGACTCAGCCCG
ACGGGCGCACGCGCCAGGTCTTTTTTTTCGACCCCGATGGCAATGGCCTAGAAGTTTCAA
GGTCAGGCACAGGCGATATGTAATTGGGGAGCATGATTTACTTGCTGTAACATTCGTCCA
TTGGTCGTGGGCTAGCAAACACGGAGACCCAAACTGCATGTTTTTATGAACATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6798#0      GACGACGTGCGCCGCCTCTCCGCCTTCTACGACGAGGTGCTCGGCTTCGAGCGGGTCGCC 60
consensus_6798#1      ------------------------------------------------------------
                                                                                  

consensus_6798#0      TCCCCGAACTACCCGGCCTTCCAGGTCGCCTGGCTCCGCCTCCCGGGGACGCCCGGCGTC 120
consensus_6798#1      ------------------------------------------------------------
                                                                                  

consensus_6798#0      GCGCTCCACATCATCAAGCGCGACCCCGCGGCGGCGCCCGCGGGCGTCGCCCCGGGCGCC 180
consensus_6798#1      ------------------------------------------------------------
                                                                                  

consensus_6798#0      TCGGGCGCCCCGCCCGCGCAGCTGCCCAAACACCACCACCTCGCCTTCTCCGTCGCCGAC 240
consensus_6798#1      ----GTGCCCCGCCCGCGCAGCTGCCCAGGGGCCACCACCTCGCTTTTTCGGTCGCCGAA 56
                          * **********************    ************ ** ** ******** 

consensus_6798#0      TACGACTGGTTCCTCACCGGGCTGAAGGGCCGGGGCACGGACGTGTTCAACAAGACGCAG 300
consensus_6798#1      TACGACGGGTTCCTCACCGGGTTGAAGGCCCGGGGCACGGAGGTGTTCGAGAAGACTCAG 116
                      ****** ************** ****** ************ ****** * ***** ***

consensus_6798#0      CCCGACGGGCGCACGCGCCAGGGCTTCTTCTTCGACCCCGATGGGAATGGCCTAGAAGTT 360
consensus_6798#1      CCCGACGGGCGCACGCGCCAGGTCTTTTTTTTCGACCCCGATGGCAATGGCCTAGAAGTT 176
                      ********************** *** ** ************** ***************

consensus_6798#0      ACAAGCTCAGGCACAGGCGATATGTAATTGCGGAGCATGATTTGCTTGCTGTAACAGTCG 420
consensus_6798#1      TCAAGGTCAGGCACAGGCGATATGTAATTGGGGAGCATGATTTACTTGCTGTAACATTCG 236
                       **** ************************ ************ ************ ***

consensus_6798#0      TGCATTGGGCGTGGGCTAGCAAACATGGAGACGCAAACTGCATGTTGTTAGGAACATGTC 480
consensus_6798#1      TCCATTGGTCGTGGGCTAGCAAACACGGAGACCCAAACTGCATGTTTTTATGAACATGT- 295
                      * ****** **************** ****** ************* *** ******** 

consensus_6798#0      CATGATATCCCCATGAATAAATTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAA 540
consensus_6798#1      ------------------------------------------------------------
                                                                                  

consensus_6798#0      TATAGCTCTATATGTTACTGGATTGCACTAAAATATATCTCCAAGTTAAAATGTTTTGCT 600
consensus_6798#1      ------------------------------------------------------------
                                                                                  

consensus_6798#0      TCTTAAAAAAAAA 613
consensus_6798#1      -------------