These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6804#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1524 fasta sequence [TGGCTCCAAGAAACCGCCCTTGAGCAACTCTCAAGAATATCTAAATACCTTTATGTCCTTGTTGAAGATATGAAATTGTTGAAAGGAAATGTTCCATTGCTAACTTCAGTGCTAAATGTGATTGCATCAACGATGAGGTTGTCTATGAAAAGGAAGATTTACCAACCACATTTCTCTTTATCCCTCCATGGCATACATAAATTGTGCCGAACTATTGGTGGCATCTCAAGAAGCATAGAAGTTAAGCTTGCAATGCAACTTGGCATTGATGTCATTCTTATGAATGGTCCTCTGCCAGTTTTGTCTGAAATGGATAAGTCGATGACAGCAACTGTTGTTTCATGGGCAACTTCTAACATCTTCTGGTTGTGTGATGAACAAAGATCTGTACTGAAAATGCCACATGAAGAGCCACTAAAAAACGAGTGCCTACTTTCTAAGATGCTGCGCTGGTTAGTGGCTTCCATAATTCTTGGGAAAATCTCCTGCATCTCTCATGAAAAGTGTGGAGACCTTACAAGGGATGCCAACAATTTTGGATCTCTTGAATCTTTCTTGAACTATACATATGATGAAAAGGTTGAAACTGTTGGCAGTCACAGTGCAGATGAGGCACTAGCTATAATTATACTGTACCTGCAAAAACATCTGAAAATGAACCGAGATTTTTTGCCATCTGTGGTGGCTGCTCTTTGCTTGTTGCTTCTTGACAGATCCAATAAACAAGTTATCAGAAACTTCATTGGCGATTATGGACAAATCGAAATGCTGTGCTCACAGATACAATGTCCGGCTGAAGCTAATCCTGCATGGAGATGGCATTATTATCAACCTTGGAAGGATCCTGCTATGCATCGCAATGAGGCAGAGCACCTAGAAGAAGAGCAGGCCTGCCAAAGCCTCCTGGTTATGTTTTCTAACAGCTTCAGTGCTGGGCTTTCAGGTTTTCCTGTGTTGTCACTTGGTGATGTTGAGAAGTCTGGCCTATTTCAGTGGGAAAGACATTCCATACTTAAATAGACGTAAACTTCAGTTTGCTGAAGTTGAAACGGTTCTTTAATTTCCCAGAGCCCA-ATGGCAATCAAC-TGACCAACTGACTGAACGGTTACGCTAGGAGGACTTGGTGTGTTTGCGTAACT-CAAAACAGAAATTGGGATAATGATTTATTTCATCAGTCATCACTACAGGACTCTATATGATGATGTGGTTCA-GGGAATCCAGGTCGATAAATGCCTGGAAAGATTTCCAACTCTCAGTTTTGAAGCAAGCATCTGCCAATACGAACCTAACATTGGTATTTGCTGCATAACTGACCTGTGTATACATATATAATCA-AAAGAACGCCTGGTCCTCAATTGGATCGTAAAGGTTGATTGTG-CCT-TTTTTTTTCTTCCTTCTATAAACGGCTGAGTATACCTGTACCGAGCTCATCAATGCAATCGATCTCTTAATTTGGAACAAGGACATCCATTATTATTGCTCACTATCTCTTGCATTAGTCATTTTCACTGGGTAAAAAAAAAA] [+] EMBL AK064498 [TGGCTCCAAGAAACCGCCCTTGAGCAACTCTCAAGAATATCTAAATACCTTTATGTCCTTGTTGAAGATATGAAATTGTTGAAAGGAAATGTTCCATTGCTAACTTCAGTGCTAAATGTGATTGCATCAACGATGAGGTTGTCTATGAAAAGGAAGATTTACCAACCACATTTCTCTTTATCCCTCCATGGCATACATAAATTGTGCCGAACTATTGGTGGCATCTCAAGAAGCATAGAAGTTAAGCTTGCAATGCAACTTGGCATTGATGTCATTCTTATGAATGGTCCTCTGCCAGTTTTGTCTGAAATGGATAAGTCGATGACAGCAACTGTTGTTTCATGGGCAACTTCTAACATCTTCTGGTTGTGTGATGAACAAAGATCTGTACTGAAAATGCCACATGAAGAGCCACTAAAAAACGAGTGCCTACTTTCTAAGATGCTGCGCTGGTTAGTGGCTTCCATAATTCTTGGGAAAATCTCCTGCATCTCTCATGAAAAGTGTGGAGACCTTACAAGGGATGCCAACAATTTTGGATCTCTTGAATCTTTCTTGAACTATACATATGATGAAAAGGTTGAAACTGTTGGCAGTCACAGTGCAGATGAGGCACTAGCTATAATTATACTGTACCTGCAAAAACATCTGAAAATGAACCGAGATTTTTTGCCATCTGTGGTGGCTGCTCTTTGCTTGTTGCTTCTTGACAGATCCAATAAACAAGTTATCAGAAACTTCATTGGCGATTATGGACAAATCGAAATGCTGTGCTCACAGATACAATGTCCGGCTGAAGCTAATCCTGCATGGAGATGGCATTATTATCAACCTTGGAAGGATCCTGCTATGCATCGCAATGAGGCAGAGCACCTAGAAGAAGAGCAGGCCTGCCAAAGCCTCCTGGTTATGTTTTCTAACAGCTTCAGTGCTGGGCTTTCAGGTTTTCCTGTGTTGTCACTTGGTGATGTTGAGAAGTCTGGCCTATTTCAGTGGGAAAGACATTCCATACTTAAATAGACGTAAACTTCAGTTTGCTGAAGTTGAAACGGTTCTTTAATTTCCCAGAGCCCA ATGGCAATCAAC TGACCAACTGACTGAACGGTTACGCTAGGAGGACTTGGTGTGTTTGCGTAACT CAAAACAGAAATTGGGATAATGATTTATTTCATCAGTCATCACTACAGGACTCTATATGATGATGTGGTTCA GGGAATCCAGGTCGATAAATGCCTGGAAAGATTTCCAACTCTCAGTTTTGAAGCAAGCATCTGCCAATACGAACCTAACATTGGTATTTGCTGCATAACTGACCTGTGTATACATATATAATCA AAAGAACGCCTGGTCCTCAATTGGATCGTAAAGGTTGATTGTG CCT TTTTTTTTCTTCCTTCTATAAACGGCTGAGTATACCTGTACCGAGCTCATCAATGCAATCGATCTCTT ] [+] EMBL CB680852 [ ACGATGCCGTTGTCTATGAAAAGGAAGATTTACCAACCACATTTCTCTTTATCCCTCCATGGCATACATAAATTGTGCCGAACTATTGGTGGCATCTCAAGAAGCATAGAAGTTAAGCTTGCAATGCAACTTGGCATTGATGTCATTCTTATGAATGGTCCTCTGCCAGTTTTGTCTGAAATGGATAAGTCGATGACAGCAACTGTTGTTTCATGGGCAACTTCTAACATCTTCTGGTTGTGTGATGAACAAAGATCTGTACTGAAAATGCCACATGAAGAGCCACTAAAAAACGAGTGCCTACTTTCTAAGATGCTGCGCTGGTTAGTGGCTTCCATAATTCTTGGGAAAATCTCCTGCATCTCTCATGAAAAGTGTGGAGACCTTACAAGGGATGCCAACAATTTTGGATCTCTTGAATCTTTCTTGAACTATACATATGATGAAAAGGTTGAAACTGTTGGCAGTCACAGTGCAGATGAGGCACTAGCTATAATTATACTGTACCTGCAAAAACATCTGAAAATGAACCGAGATTTTTTGCCATCTGTGGTGGCTGCTCTTTGCTTGTTGCTTCTTGACAGATCCAATAAACAAGTTATCAGAAACTTCATTGGCGATTATGGACAAATCGAAATGCTGTGCTCACAGATACAATGTCCGGCTGAAGCTAATCCTGCATGGAGATGGCATTATTATCAACCTTGGAAGGATCCTGCTATGCATCGCAATGAGGCAGAGCACCTAGAAGAAGAGCAGGCCTGCCAAAGCCTCCTGGTT ] [-] EMBL CB680853 [ AAGGTTGAAACTGTTGGCAGTCACAGTGCAGATGAGGCACTAGCTATAATTATACTGTACCTGCAAAAACATCTGAAAATGAACCGAGATTTTTTGCCATCTGTGGTGGCTGCTCTTTGCTTGTTGCTTCTTGACAGATCCAATAAACAAGTTATCAGAAACTTCATTGGCGATTATGGACAAATCGAAATGCTGTGCTCACAGATACAATGTCCGGCTGAAGCTAATCCTGCATGGAGATGGCATTATTATCAACCTTGGAAGGATCCTGCTATGCATCGCAATGAGGCAGAGCACCTAGAAGAAGAGCAGGCCTGCCAAAGCCTCCTGGTTATGTTTTCTAACAGCTTCAGTGCTGGGCTTTCAGGTTTTCCTGTGTTGTCACTTGGTGATGTTGAGAAGTCTGGCCTATTTCAGTGGGAAAGACATTCCATACTTAAATAGACGTAAACTTCAGTTTGCTGAAGTTGAAACGGTTCTTTAATTTCCCAGAGCCCA ATGGCAATCAAC TGACCAACTGACTGAACGGTTACGCTAGGAGGACTTGGTGTGTTTGCGTAACT CAAAACAGAAATTGGGATAATGATTTATTTCATCAGTCATCACTACAGGACTCTATATGATGATGTGGTTCA GGGAATCCAGGTCGATAAATGCCTGGAAAGATTTCCAACTCTCAGTTTTGAAGCAAGCATCTGCCAATACGAACCTAACATTGGTATTTGCTGCATAACTGACCTGTGTATACATATATAATCA AAAGAACGCCTGGTCCTCAATTGGATCGTAAAGGTTGATTGTG CCT TTTTTTTTCTTCCTTCTATAAACGGCTGAGTATACCTGTACCGAGGTCATCAATGCAATCGATCTCTTAATTTGGA ] [+] EMBL BI812434 [ cGTTCTTTTA TTCCC GAGCCCACATGGCAATCAACGTGACCAACTGACTGTACGGTTAC CTAGGA GACTT GT TGTTTGCGTTACTCCAACACAGAAATTGGGATAATGATTTATTTCATCAGTCATCACTACAGGACTCTATATGATGATGTGGTTCACGGGAATCCAGGTCGATAAATGCCTGGAAAGATTTCCCACTCTCA TTTTGAAGCAAGCATCTGCCCATACGAACCT ACATTGGTATTTGCTGCATAACTGACCTGTGTATACATATATAATCACAAAG ACGCCTGGTCCTCAATTGGATCGTAAAGGTTGATTGTGCCCTGTTTTTTTTCTTCCTTCTATAAACGGCTGAGTATACCTGTACCGAGCTCATCAATGCAATCGATCTCTTAATTTGTGACAAGGACATCCATTATTATTGCTCACTATCTCTTGCATTAGTCATTTTCACTGGGTAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||