cluster # 6808

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Oryza sativa
cluster # 6808 cluster # 6808 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6808#0 length = 558 sequences # 2

consensus_6808#1 length = 487 sequences # 1
consensus_6808#2 length = 428 sequences # 1

consensusID : consensus_6808#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 558
fasta sequence

                              [CGTGAAATATCTAGGCTGTTCTGGAAATCACAAAGGAATTCCTTGAGTTATTGCAGTCCTC-TTCAATTAAAGATTTTCGGTGGCAGTATTCTCTTCGAGACTCTGAGGCCAGTGTTGATATCTAGCTATCTGCTGGTCC-GACACTCTCACTAGACAGTGAAAATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTCTTGCGACCCAACATGCTCAAGGCTT-CCGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGGTCCTCGTAACCTACTTGTGCTGTCAACATTTTATCTGCTTGTTTCCATTCCTAC-ATACTTCTGGACTACGATTCCTGTTTCAGTACTGACTACGGAGTACTAGGCCTTTGTCTGTCATTACTGTATTCTACTATATTAGTAAGGAGTTCTTTTTTTTTTTGCAAGGTATTAAGGAGTTCTTTATATTGTTTGGGACAGGGAGTCCTATGTTTATGAGATGTTTTCCCAGGTTTTATTAGTTCTATATATCCCCCGCAAATTCTATTTAAAAAAAAAA]

[-] EMBL BU667239             [CGTGAAATATCTAGGCTGTTCTGGAAATCACAAAGGAATTCCTTGAGTTATTGCAGTCCTC TTCAATTAAAGATTTTCGGTGGCAGTATTCTCTTCGAGACTCTGAGGCCAGTGTTGATATCTAGCTATCTGCTGGTCC GACACTCTCACTAGACAGTGAAAATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTCTTGCGACCCAACATGCTCAAGGCTT CCGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGGTCCTCGTAACCTACTTGTGCTGTCAACATTTTATCTGCTTGTTTCCATTCCTAC ATACTTCTGGACTACGATTCCTGTTTCAGTACTGACTAC                                                                                                                                                                                        ]
[+] EMBL BI812250             [                                                        TCCTCGTTCAATTAAAGATTTTCGGT GCAGTATTCTCTTCGAGACTCTGAGGCCAGTGTTGATATCTAGCTATCT CT GTCCGGACACTCTCACTAGACAGTGAAAATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTCTTGC A CCAACATGCTCAAGGCTTGCCGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGGTCCTCGTAACCTACTTGTGCTGTCAACATTTTATCTGCTTGTTTCCATTCCTACAATACTTCTGGACTACGATTCCTGTTTCAGTACTGACTACGGAGTACTAGGCCTTTGTCTGTCATTACTGTATTCTACTATATTAGTAAGGAGTTCTTTTTTTTTTTGCAAGGTATTAAGGAGTTCTTTATATTGTTTGGGACAGGGAGTCCTATGTTTATGAGATGTTTTCCCAGGTTTTATTAGTTCTATATATCCCCCGCAAATTCTATTTAAAAAAAAAA]




>consensus_6808#0
CGTGAAATATCTAGGCTGTTCTGGAAATCACAAAGGAATTCCTTGAGTTATTGCAGTCCT
CTTCAATTAAAGATTTTCGGTGGCAGTATTCTCTTCGAGACTCTGAGGCCAGTGTTGATA
TCTAGCTATCTGCTGGTCCGACACTCTCACTAGACAGTGAAAATGTTTTCGACAAGGACG
GGATATATGGATTATTGGAGCATCATCGATCCTCTTGCGACCCAACATGCTCAAGGCTTC
CGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGGTCCTCGTAACCTACTTGTG
CTGTCAACATTTTATCTGCTTGTTTCCATTCCTACATACTTCTGGACTACGATTCCTGTT
TCAGTACTGACTACGGAGTACTAGGCCTTTGTCTGTCATTACTGTATTCTACTATATTAG
TAAGGAGTTCTTTTTTTTTTTGCAAGGTATTAAGGAGTTCTTTATATTGTTTGGGACAGG
GAGTCCTATGTTTATGAGATGTTTTCCCAGGTTTTATTAGTTCTATATATCCCCCGCAAA
TTCTATTTAAAAAAAAAA

consensusID : consensus_6808#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [CCATTCAGTTCCTCATGGCCCCTGAAATATCTAGCTTTCTGGAAATCACACAAGGAATTCCTTGAGTTATTCCAGTCCTCTTCAATTAAAGATTTTCGGTGCCAGTATTCTCTTCGAGACTCTGAGGCCAGTGTTGATATCTAGCTATCTGCTGGTCCGACACTCTCACTAGACAGTGAAAATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTCTTGCACCAAACATGCTCAAGGCTTGCCGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGGTCCTCGTAACCTACTTGTGCTGTCCACATTTTATCTGCTTGTTTCCATTCCTACAATACTTCTGGACTACGATTCCTGTTTCAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACTGTATTCTACTATATTATTAAGGAGTTCTTTTTTTTTTTGCCAAAAAAAAACAACAAAAAAAAAA]

[+] EMBL BI812428             [CCATTCAGTTCCTCATGGCCCCTGAAATATCTAGCTTTCTGGAAATCACACAAGGAATTCCTTGAGTTATTCCAGTCCTCTTCAATTAAAGATTTTCGGTGCCAGTATTCTCTTCGAGACTCTGAGGCCAGTGTTGATATCTAGCTATCTGCTGGTCCGACACTCTCACTAGACAGTGAAAATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTCTTGCACCAAACATGCTCAAGGCTTGCCGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGGTCCTCGTAACCTACTTGTGCTGTCCACATTTTATCTGCTTGTTTCCATTCCTACAATACTTCTGGACTACGATTCCTGTTTCAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACTGTATTCTACTATATTATTAAGGAGTTCTTTTTTTTTTTGCCAAAAAAAAACAACAAAAAAAAAA]




>consensus_6808#1
CCATTCAGTTCCTCATGGCCCCTGAAATATCTAGCTTTCTGGAAATCACACAAGGAATTC
CTTGAGTTATTCCAGTCCTCTTCAATTAAAGATTTTCGGTGCCAGTATTCTCTTCGAGAC
TCTGAGGCCAGTGTTGATATCTAGCTATCTGCTGGTCCGACACTCTCACTAGACAGTGAA
AATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTCTTGCACC
AAACATGCTCAAGGCTTGCCGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGG
TCCTCGTAACCTACTTGTGCTGTCCACATTTTATCTGCTTGTTTCCATTCCTACAATACT
TCTGGACTACGATTCCTGTTTCAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATT
ACTGTATTCTACTATATTATTAAGGAGTTCTTTTTTTTTTTGCCAAAAAAAAACAACAAA
AAAAAAA

consensusID : consensus_6808#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [CAGTCCGTTTCAGGTGGCATNATGTCTCTTGCGGAGACTCTGATGGCCTAGGTGTGTGATATCTAGCTGATGCTGCTGGTCACGACACTGCTGCACTAGAGCAGTGGAAAATGTTGTTGCGACAAGGACGGGATATATGGGATGTATGTGGGAGCATGCATCGATGCCTGCTTGGCACCCAACAATGGCTGCAAGGCTTCCGTTTTCCGTTTGCCGTGTGTGCATGGAATAGAATGGAATGTGCAAGTGGGTCCTCGTGAACCTACCTTGGTAGCTGTGCAACATGTCTTATCTNGCTTGTTTCCATTGCCTACAATGACTTCTGGGACTACGATTCCTGTTNTCAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACNGTATTCTACTATATTATTAAGGAGTTCTTTTTTTTAAAAAAA]

[+] EMBL BM420800             [CAGTCCGTTTCAGGTGGCATNATGTCTCTTGCGGAGACTCTGATGGCCTAGGTGTGTGATATCTAGCTGATGCTGCTGGTCACGACACTGCTGCACTAGAGCAGTGGAAAATGTTGTTGCGACAAGGACGGGATATATGGGATGTATGTGGGAGCATGCATCGATGCCTGCTTGGCACCCAACAATGGCTGCAAGGCTTCCGTTTTCCGTTTGCCGTGTGTGCATGGAATAGAATGGAATGTGCAAGTGGGTCCTCGTGAACCTACCTTGGTAGCTGTGCAACATGTCTTATCTNGCTTGTTTCCATTGCCTACAATGACTTCTGGGACTACGATTCCTGTTNTCAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACNGTATTCTACTATATTATTAAGGAGTTCTTTTTTTTAAAAAAA]




>consensus_6808#2
CAGTCCGTTTCAGGTGGCATNATGTCTCTTGCGGAGACTCTGATGGCCTAGGTGTGTGAT
ATCTAGCTGATGCTGCTGGTCACGACACTGCTGCACTAGAGCAGTGGAAAATGTTGTTGC
GACAAGGACGGGATATATGGGATGTATGTGGGAGCATGCATCGATGCCTGCTTGGCACCC
AACAATGGCTGCAAGGCTTCCGTTTTCCGTTTGCCGTGTGTGCATGGAATAGAATGGAAT
GTGCAAGTGGGTCCTCGTGAACCTACCTTGGTAGCTGTGCAACATGTCTTATCTNGCTTG
TTTCCATTGCCTACAATGACTTCTGGGACTACGATTCCTGTTNTCAGTACTGACTACGGA
GTACTAGGCTTTTGTCTGTCATTACNGTATTCTACTATATTATTAAGGAGTTCTTTTTTT
TAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6808#0      --------------------CGTGAAATATCTAGGCTGTTCTGGAAATCACA-AAGGAAT 39
consensus_6808#1      CCATTCAGTTCCTCATGGCCCCTGAAATATCTAGCTT--TCTGGAAATCACACAAGGAAT 58
consensus_6808#2      ------------------------------------------------------------
                                                                                  

consensus_6808#0      TCCTTGAGTTATTGCAGTCCTCTTCAATTAAAGATTTTCGGTGGCAGTAT-TCTCTTC-- 96
consensus_6808#1      TCCTTGAGTTATTCCAGTCCTCTTCAATTAAAGATTTTCGGTGCCAGTAT-TCTCTTC-- 115
consensus_6808#2      ------------------------CAGTCCG---TTTCAGGTGGCATNATGTCTCTTGCG 33
                                              ** *      ***  **** **  ** ******   

consensus_6808#0      GAGACTCTGA-GGCC--AGTGT-TGATATCTAGCTAT--CTGCTGGTC-CGACACTCT-- 147
consensus_6808#1      GAGACTCTGA-GGCC--AGTGT-TGATATCTAGCTAT--CTGCTGGTC-CGACACTCT-- 166
consensus_6808#2      GAGACTCTGATGGCCTAGGTGTGTGATATCTAGCTGATGCTGCTGGTCACGACACTGCTG 93
                      ********** ****   **** ************    ********* *******    

consensus_6808#0      CACTAGA-CAGTG-AAAATGTTTT--CGACAAGGACGGGATATATGGATTATT----GGA 199
consensus_6808#1      CACTAGA-CAGTG-AAAATGTTTT--CGACAAGGACGGGATATATGGATTATT----GGA 218
consensus_6808#2      CACTAGAGCAGTGGAAAATGTTGTTGCGACAAGGACGGGATATATGGGATGTATGTGGGA 153
                      ******* ***** ******** *  *********************  * *     ***

consensus_6808#0      GCAT-CATCGATCCT--CTTGCGACCCAACAT--GCT-CAAGGCTT-CCGTTTTCGTTT- 251
consensus_6808#1      GCAT-CATCGATCCT--CTTGC-ACCAAACAT--GCT-CAAGGCTTGCCGTTTTCGTTT- 270
consensus_6808#2      GCATGCATCGATGCCTGCTTGGCACCCAACAATGGCTGCAAGGCTTCCGTTTTCCGTTTG 213
                      **** ******* *   ****  *** ****   *** ******** *  *** ***** 

consensus_6808#0      CCGTTT---CATG-AATAAAT--GAATGT-CAAGTGG-TCCTCGT-AACCTACTT--GT- 299
consensus_6808#1      CCGTTT---CATG-AATAAAT--GAATGT-CAAGTGG-TCCTCGT-AACCTACTT--GT- 318
consensus_6808#2      CCGTGTGTGCATGGAATAGAATGGAATGTGCAAGTGGGTCCTCGTGAACCTACCTTGGTA 273
                      **** *   **** **** *   ****** ******* ******* ******* *  ** 

consensus_6808#0      GCTGT-CAACAT--TTTATCTG-CTTGTTTCCATT-CCTACA-T-ACTTCTGG-ACTACG 351
consensus_6808#1      GCTGT-CCACAT--TTTATCTG-CTTGTTTCCATT-CCTACAAT-ACTTCTGG-ACTACG 371
consensus_6808#2      GCTGTGCAACATGTCTTATCTNGCTTGTTTCCATTGCCTACAATGACTTCTGGGACTACG 333
                      ***** * ****   ******  ************ ****** * ******** ******

consensus_6808#0      ATTCCTGTTT-CAGTACTGACTACGGAGTACTAGGCCTTTGTCTGTCATTACTGTATTCT 410
consensus_6808#1      ATTCCTGTTT-CAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACTGTATTCT 430
consensus_6808#2      ATTCCTGTTNTCAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACNGTATTCT 393
                      *********  ************************* *************** *******

consensus_6808#0      ACTATATTAGTAAGGAGTTCTTTTTTTTTTTGCAAGGTATTAAGGAGTTCTTTATATTGT 470
consensus_6808#1      ACTATATTATTAAGGAGTTCTTTTTTTTTTTGCCAAAAAAAAACAACAAAAAAAAAA--- 487
consensus_6808#2      ACTATATTATTAAGGAGTTCTTTTTTTTAAAAAAA------------------------- 428
                      ********* ******************      *                         

consensus_6808#0      TTGGGACAGGGAGTCCTATGTTTATGAGATGTTTTCCCAGGTTTTATTAGTTCTATATAT 530
consensus_6808#1      ------------------------------------------------------------
consensus_6808#2      ------------------------------------------------------------
                                                                                  

consensus_6808#0      CCCCCGCAAATTCTATTTAAAAAAAAAA 558
consensus_6808#1      ----------------------------
consensus_6808#2      ----------------------------