cluster # 6810

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Oryza sativa
cluster # 6810 cluster # 6810 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6810#0 length = 751 sequences # 3

consensus_6810#1 length = 418 sequences # 1

consensusID : consensus_6810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 751
fasta sequence

                              [TTTTTTTTTTCCACCAAAAGCCACATACAGCTGAAATAACAT-GGTCATGACATAAATGTTGAAATCAGCACATACA-GTGCATCAT-CTCTCATCACAGATTTGCATACAA-CCCCAAAATGCATCACTACCATTAAGTGCCACATACAGTACCATCACATATGCATGTCTTGCAGTGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACATGACTAAAATACATCAG-ACCATAGTACCAAAACGCTAGATTAACTGGAGTACTACATAAGTACCGTGCAACCAGAGATCACAGTACCAAAATATGTGAGCACATGTTAATTAAAAAGGATCCCTAATTAAAATTTAGAGATTTC-TTTTGCTCCTTGTACTCATGGCTGGACTATCAGGAGACACAGGAATGAAGTTGCC-TTTTG-TTGACTTGTGCCAAAGGCGTAGTAGCAGCGCTATCCTTTGTATTCTTCCTAGGAGCTATCTTGGCTTTAG-CTTGGTCTTTGTCTTACGCCTTGGCCTTAAAGAGTTCTCTCCAGGCGCTGTAAGTGGCATCAACACACTCAAAGGTTCAGGTTGGTTGGATCCTGTCACTGACCTTGATCTAACTGACCCTGATGAAGTATTACTGAGGTCCTGTCCTTTTTTCCCGGTTTGACAACTTTTGCTTGGTGGATATGTCATTGTTGCAGACAATATTGCATTTTGAGCAGAAGATGCACTAGGAACATGTACAATGCTAGTTTCAGCA]

[-] EMBL BI812596             [TTTTTTTTTTCCACCAAAAGCCACATACAGCTGAAATAACAT GGTCATGACATAAATGTTGAAATCAGCACATACA GTGCATCAT CTCTCATCACAGATTTGCATACAA CCCCAAAATGCATCACTACCATTAAGTGCCACATACAGTACCATCACATATGCATGTCTTGCAGTGCCATAGAAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL BI812246             [                tttttttttTACAGCTGAAATAACATGGGTCATGACATAAATGTTGAAATCAGCACATACA GTGCATCAT CTCTCATCACAGA TTGCATACAAGCCCCAAAATGCATCACTACCATTAAGTGCCACATACAGTACCATCACATATGCATGTCTGGCAGTGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACATGACTAAAATACATCAG ACCATAGTACCAAAACGCTAGATTAACTGGAGTACTACATAAGTACCGTGCAACCAGAGATCACAGTACCAAAATATGTGAGCACATGTTAATTAAAAAGGATCCCTAATTAAAATTTAGAGATTTC TTTTGCTCCTTGTACTCATGGCTGGACTATCAGGAGACACAGGAATGAAGTTGCC TTTTG TTGACTTGTGCCAAAGGCGTAGTAGCAGCGCTATCCTTTGTATTCTTCCTAGGAGCTATCTTGGCTTTAG CTTGGTCTTTGTCTTACGCCTTGGCCTTAAAGAGTTCTCTCCAGGCGCTGTA                                                                                                                                                                                                            ]
[+] EMBL CB642571             [                                           GGACATGACATAAATGTTGCCATCAAAACATACAGGTGCATCATGCTCTCATCACAGATTTGCATACAA CCCCAAAATGCATCACTATCATTAAGTGCCACATACAGTACCATCACATATGCATGTCTTGCAGTGCCATAGAAGTGCCATCTCACCACATACAGTACCATCACCATATACATGACTAAAATGCATCAGCACCATAGTACCAAAACGCTAGATTAACTGGAGTACTACATAAGTACCGTGCAACCAGAGATCACAGTACCAAAATATGTGAGCACATGTTAATTAAAAAGGATCCCTAATTAAAATTTAGAGATTTCTTTTTGCTCCTTGTACTCATGGCTGGACTATCAGGAGACACAGGAATGAAGTTGCCTTTTTGTTTGACTTGTGCCAAAGGCGTAGTAGCAGCGCTATCCTTTGTATTCTTCCTAGGAGCTATCTTGGCTTTAGTTTTGGTC  TGTCTTA GCCTTGGCCTT  AGAGTTCTCTCCAGGCGCTGCTAGTGGCATCAACACACTCAAAGGTTCAGGTTGGTTGGATCCTGTCACTGACCTTGATCTAACTGACCCTGATGAAGTATTACTGAGGTCCTGTCCTTTTTTCCCGGTTTGACAACTTTTGCTTGGTGGATATGTCATTGTTGCAGACAATATTGCATTTTGAGCAGAAGATGCACTAGGAACATGTACAATGCTAGTTTCAGCA]




>consensus_6810#0
TTTTTTTTTTCCACCAAAAGCCACATACAGCTGAAATAACATGGTCATGACATAAATGTT
GAAATCAGCACATACAGTGCATCATCTCTCATCACAGATTTGCATACAACCCCAAAATGC
ATCACTACCATTAAGTGCCACATACAGTACCATCACATATGCATGTCTTGCAGTGCCATA
GAAGTGCCATCTCACCACATAAAGTACCATCACCATATACATGACTAAAATACATCAGAC
CATAGTACCAAAACGCTAGATTAACTGGAGTACTACATAAGTACCGTGCAACCAGAGATC
ACAGTACCAAAATATGTGAGCACATGTTAATTAAAAAGGATCCCTAATTAAAATTTAGAG
ATTTCTTTTGCTCCTTGTACTCATGGCTGGACTATCAGGAGACACAGGAATGAAGTTGCC
TTTTGTTGACTTGTGCCAAAGGCGTAGTAGCAGCGCTATCCTTTGTATTCTTCCTAGGAG
CTATCTTGGCTTTAGCTTGGTCTTTGTCTTACGCCTTGGCCTTAAAGAGTTCTCTCCAGG
CGCTGTAAGTGGCATCAACACACTCAAAGGTTCAGGTTGGTTGGATCCTGTCACTGACCT
TGATCTAACTGACCCTGATGAAGTATTACTGAGGTCCTGTCCTTTTTTCCCGGTTTGACA
ACTTTTGCTTGGTGGATATGTCATTGTTGCAGACAATATTGCATTTTGAGCAGAAGATGC
ACTAGGAACATGTACAATGCTAGTTTCAGCA

consensusID : consensus_6810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [TACAGTGAAATAACAGGGTCATGACCATAAAGTGTTGAAATCAGCACATACAGGGGCATCATCTCTCATCACAGATTGGGATACAACCCCAAAAGGGATCACTACCATTAAGGTGNCACATACAGTACCATCACAGTAGTGGCAGTGTCTTGGCAGGGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACAGTGACTAAAATACATCAGCACCATAGTACCAAAACGCTAGATTAACGTGGAGTACTACATAAGTACCGGGCAACCAGAGATCACAGTACCAAAATATGTGAGCACAGTGTTAATTAACAAGAGGATCCCTAATTCAACACATTTAGAGATTTCTTTTGGNTCCTGTGGTACTCAGGGGTGGCACTATCAGGCAGCACCACAGGAATGAAGCGGC]

[-] EMBL BM420293             [TACAGTGAAATAACAGGGTCATGACCATAAAGTGTTGAAATCAGCACATACAGGGGCATCATCTCTCATCACAGATTGGGATACAACCCCAAAAGGGATCACTACCATTAAGGTGNCACATACAGTACCATCACAGTAGTGGCAGTGTCTTGGCAGGGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACAGTGACTAAAATACATCAGCACCATAGTACCAAAACGCTAGATTAACGTGGAGTACTACATAAGTACCGGGCAACCAGAGATCACAGTACCAAAATATGTGAGCACAGTGTTAATTAACAAGAGGATCCCTAATTCAACACATTTAGAGATTTCTTTTGGNTCCTGTGGTACTCAGGGGTGGCACTATCAGGCAGCACCACAGGAATGAAGCGGC]




>consensus_6810#1
TACAGTGAAATAACAGGGTCATGACCATAAAGTGTTGAAATCAGCACATACAGGGGCATC
ATCTCTCATCACAGATTGGGATACAACCCCAAAAGGGATCACTACCATTAAGGTGNCACA
TACAGTACCATCACAGTAGTGGCAGTGTCTTGGCAGGGCCATAGAAGTGCCATCTCACCA
CATAAAGTACCATCACCATATACAGTGACTAAAATACATCAGCACCATAGTACCAAAACG
CTAGATTAACGTGGAGTACTACATAAGTACCGGGCAACCAGAGATCACAGTACCAAAATA
TGTGAGCACAGTGTTAATTAACAAGAGGATCCCTAATTCAACACATTTAGAGATTTCTTT
TGGNTCCTGTGGTACTCAGGGGTGGCACTATCAGGCAGCACCACAGGAATGAAGCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6810#0      TTTTTTTTTTCCACCAAAAGCCACATACAGCTGAAATAACATGGTCATGAC-ATAAA-TG 58
consensus_6810#1      -------------------------TACAG-TGAAATAACAGGGTCATGACCATAAAGTG 34
                                               ***** ********** ********* ***** **

consensus_6810#0      TTGAAATCAGCACATACAGTG-CATCATCTCTCATCACAGATTTGCATACAACCCCAAAA 117
consensus_6810#1      TTGAAATCAGCACATACAGGGGCATCATCTCTCATCACAGATTGGGATACAACCCCAAAA 94
                      ******************* * ********************* * **************

consensus_6810#0      TGCATCACTACCATTAAG-TGCCACATACAGTACCATCACATATGCA----TGTCTTG-C 171
consensus_6810#1      GGGATCACTACCATTAAGGTGNCACATACAGTACCATCACAGTAGTGGCAGTGTCTTGGC 154
                       * *************** ** *******************   *      ******* *

consensus_6810#0      AGTGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACA-TGACTAAAA 230
consensus_6810#1      AGGGCCATAGAAGTGCCATCTCACCACATAAAGTACCATCACCATATACAGTGACTAAAA 214
                      ** *********************************************** *********

consensus_6810#0      TACATCAG-ACCATAGTACCAAAACGCTAGATTAAC-TGGAGTACTACATAAGTACCGTG 288
consensus_6810#1      TACATCAGCACCATAGTACCAAAACGCTAGATTAACGTGGAGTACTACATAAGTACCGGG 274
                      ******** *************************** ********************* *

consensus_6810#0      CAACCAGAGATCACAGTACCAAAATATGTGAGCACA-TGTTAATTAA--AAAGGATCCCT 345
consensus_6810#1      CAACCAGAGATCACAGTACCAAAATATGTGAGCACAGTGTTAATTAACAAGAGGATCCCT 334
                      ************************************ **********  * *********

consensus_6810#0      AATTAAA---ATTTAGAGATTTCTTTTGCTCCTTGT---ACTCATGGCTGG-ACTATCAG 398
consensus_6810#1      AATTCAACACATTTAGAGATTTCTTTTGGNTCCTGTGGTACTCAGGGGTGGCACTATCAG 394
                      **** **   ******************   * ***   ***** ** *** ********

consensus_6810#0      GAGACAC---AGGAATGAAGTTGCCTTTTGTTGACTTGTGCCAAAGGCGTAGTAGCAGCG 455
consensus_6810#1      GCAGCACCACAGGAATGAAGCGGC------------------------------------ 418
                      *   ***   **********  **                                    

consensus_6810#0      CTATCCTTTGTATTCTTCCTAGGAGCTATCTTGGCTTTAGCTTGGTCTTTGTCTTACGCC 515
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      TTGGCCTTAAAGAGTTCTCTCCAGGCGCTGTAAGTGGCATCAACACACTCAAAGGTTCAG 575
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      GTTGGTTGGATCCTGTCACTGACCTTGATCTAACTGACCCTGATGAAGTATTACTGAGGT 635
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      CCTGTCCTTTTTTCCCGGTTTGACAACTTTTGCTTGGTGGATATGTCATTGTTGCAGACA 695
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      ATATTGCATTTTGAGCAGAAGATGCACTAGGAACATGTACAATGCTAGTTTCAGCA 751
consensus_6810#1      --------------------------------------------------------