cluster # 6818

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Oryza sativa
cluster # 6818 cluster # 6818 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6818#0 length = 1012 sequences # 2

consensus_6818#1 length = 571 sequences # 1
consensus_6818#2 length = 504 sequences # 1

consensusID : consensus_6818#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1012
fasta sequence

                              [ATGCAGAGGACCGCCAAGGAGCTGCTCGAGCAGTATCTCAAGTTCCGGCAGGAGGCCGACGACGACGGCGACGGTGGTGACAACAAGAAGGCGAGCAAGAAAGGGAAGAAGAAGAAGAAGGAGAAGGACCCCTCAAAGCCGAAGCAGCCCATGTCCGCCTACTTCGTCTACACCCAGCAGCGCCGCGCGGCGCTCGTCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGGATCACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGCGCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGAGGAGGCGGCGTGCCAGGAGAAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGAGGCGCTCCAGCTGCTCAAGAAGAAGGAGAAGACGGACAACATCATCAAGAAGACCAAGGAGGAGCAGAGGAAGAAGAAGGTGGGCGGCGCCGCCGCTGCCGCCGACCCGAACCGGCCCAAGAAGCCGGCGTCGTCGTTCCTGCTGTTCAGCAAGGAGGCGAGGCGGCAGCTGGCGGAGGAGCGCCCCGGCGTGGCGAGCTCCACGCTGACCGCGCTCGTGTCGGTGAAGTGGAAGGAGCTCGGGGAGGCGGAGAAGCAGGCGTGGAACGGCAAGGCCGCGGAGGCCATGGCGGCGTACAAGAGGGACATGGAGGAGTACACCAAGGCGGCGGCCAGCGGCGGCGGCGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATACA]

[+] EMBL AK070270             [ATGCAGAGGACCGCCAAGGAGCTGCTCGAGCAGTATCTCAAGTTCCGGCAGGAGGCCGACGACGACGGCGACGGTGGTGACAACAAGAAGGCGAGCAAGAAAGGGAAGAAGAAGAAGAAGGAGAAGGACCCCTCAAAGCCGAAGCAGCCCATGTCCGCCTACTTCGTCTACACCCAGCAGCGCCGCGCGGCGCTCGTCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGGATCACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGCGCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGAGGAGGCGGCGTGCCAGGAGAAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGAGGCGCTCCAGCTGCTCAAGAAGAAGGAGAAGACGGACAACATCATCAAGAAGACCAAGGAGGAGCAGAGGAAGAAGAAGGTGGGCGGCGCCGCCGCTGCCGCCGACCCGAACCGGCCCAAGAAGCCGGCGTCGTCGTTCCTGCTGTTCAGCAAGGAGGCGAGGCGGCAGCTGGCGGAGGAGCGCCCCGGCGTGGCGAGCTCCACGCTGACCGCGCTCGTGTCGGTGAAGTGGAAGGAGCTCGGGGAGGCGGAGAAGCAGGCGTGGAACGGCAAGGCCGCGGAGGCCATGGCGGCGTACAAGAGGGACATGGAGGAGTACACCAAGGCGGCGGCCAGCGGCGGCGGCGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATACA]
[+] EMBL AU030146             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCGGCGCCGCNTNGACCGCCGACCCGAACCGGCCCAAGAAGCCGGCGTCGTCGTTCCTGCTGTTCAGCAAGGAGGCGAGGCGGCA CTGGCGGAGGAGCGCCCCGGCGTNGCGAGCTCCACNCTGACCGCGCTCGTNTCGGTGAAGTGGAAGGAGCTCGGGGAGGCGGAGAAGCAGGCGTNGAACNGCAATGCCGCGGAGGCCATNGCGGCGTACAAGAGGGACATNGAGGAGTACACCAAGG                                                                                                                                                                                                                                                                                    ]




>consensus_6818#0
ATGCAGAGGACCGCCAAGGAGCTGCTCGAGCAGTATCTCAAGTTCCGGCAGGAGGCCGAC
GACGACGGCGACGGTGGTGACAACAAGAAGGCGAGCAAGAAAGGGAAGAAGAAGAAGAAG
GAGAAGGACCCCTCAAAGCCGAAGCAGCCCATGTCCGCCTACTTCGTCTACACCCAGCAG
CGCCGCGCGGCGCTCGTCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGGATCACCGGC
GAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGCGCGGAAG
CAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGAGGAGGCG
GCGTGCCAGGAGAAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGAGGCGCTCCAG
CTGCTCAAGAAGAAGGAGAAGACGGACAACATCATCAAGAAGACCAAGGAGGAGCAGAGG
AAGAAGAAGGTGGGCGGCGCCGCCGCTGCCGCCGACCCGAACCGGCCCAAGAAGCCGGCG
TCGTCGTTCCTGCTGTTCAGCAAGGAGGCGAGGCGGCAGCTGGCGGAGGAGCGCCCCGGC
GTGGCGAGCTCCACGCTGACCGCGCTCGTGTCGGTGAAGTGGAAGGAGCTCGGGGAGGCG
GAGAAGCAGGCGTGGAACGGCAAGGCCGCGGAGGCCATGGCGGCGTACAAGAGGGACATG
GAGGAGTACACCAAGGCGGCGGCCAGCGGCGGCGGCGGCGGCGACGCCTCCCCCTGTACG
TCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTG
ACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGATTGGTGCGAA
GTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTG
CTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATACA

consensusID : consensus_6818#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [NAATTGTTACCGGNCCCCCCCTCGANTTCGACCCACGCGTCCNAAAANTTGNCNCNCCNCCTTACCGCCGACCNNAACCGNCCCAAGAAGCCGGCTTCGTCGTTCCTGCTGTTCAGCAAGNANTCGAGNCGNCAGCTGNCGNAGGAGCGCCCCGNCGTGGCGAGNTCCACNCTGACCGCGCTCGTGTCGGTGAAGTGGNAGGANCTCGGGGANGCGGAGAAGCAGNCNTGGAACGGCAAGGCCGCGGAGNCCATGGCGGCGTACAAGAGGGACATGGAGGNGTACACCAAGGCGGCGGCCAGCGGCNGCGGCGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGNGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGNTTATTTTCATAAAAAA]

[+] EMBL AU030147             [NAATTGTTACCGGNCCCCCCCTCGANTTCGACCCACGCGTCCNAAAANTTGNCNCNCCNCCTTACCGCCGACCNNAACCGNCCCAAGAAGCCGGCTTCGTCGTTCCTGCTGTTCAGCAAGNANTCGAGNCGNCAGCTGNCGNAGGAGCGCCCCGNCGTGGCGAGNTCCACNCTGACCGCGCTCGTGTCGGTGAAGTGGNAGGANCTCGGGGANGCGGAGAAGCAGNCNTGGAACGGCAAGGCCGCGGAGNCCATGGCGGCGTACAAGAGGGACATGGAGGNGTACACCAAGGCGGCGGCCAGCGGCNGCGGCGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGNGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGNTTATTTTCATAAAAAA]




>consensus_6818#1
NAATTGTTACCGGNCCCCCCCTCGANTTCGACCCACGCGTCCNAAAANTTGNCNCNCCNC
CTTACCGCCGACCNNAACCGNCCCAAGAAGCCGGCTTCGTCGTTCCTGCTGTTCAGCAAG
NANTCGAGNCGNCAGCTGNCGNAGGAGCGCCCCGNCGTGGCGAGNTCCACNCTGACCGCG
CTCGTGTCGGTGAAGTGGNAGGANCTCGGGGANGCGGAGAAGCAGNCNTGGAACGGCAAG
GCCGCGGAGNCCATGGCGGCGTACAAGAGGGACATGGAGGNGTACACCAAGGCGGCGGCC
AGCGGCNGCGGCGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCG
CCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCC
AATGGNGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGT
TTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGC
TTGAGAAATTTCAGNTTATTTTCATAAAAAA

consensusID : consensus_6818#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [TCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGGATCACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGCGCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGAGGAGGCGGCGTGCCAGGAGAAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGAGGCGCTCCAGCTGCTCAAGAAGAAGGAGAAGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATAAAAAAA]

[+] EMBL AU165893             [TCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGGATCACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGCGCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGAGGAGGCGGCGTGCCAGGAGAAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGAGGCGCTCCAGCTGCTCAAGAAGAAGGAGAAGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATAAAAAAA]




>consensus_6818#2
TCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGGATCACCGGCGAGGAGTGGAAGGCGA
TGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGCGCGGAAGCAGAGGGAGGAGTACC
AGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGAGGAGGCGGCGTGCCAGGAGAAAG
AGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGAGGCGCTCCAGCTGCTCAAGAAGAAGG
AGAAGGCGGCGACGCCTCCCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGAT
GGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGA
AAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGT
AACATTTCGTATGGATTGGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAA
TTTCAGCTTATTTTCATAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6818#0      ATGCAGAGGACCGCCAAGGAGCTGCTCGAGCAGTATCTCAAGTTCCGGCAGGAGGCCGAC 60
consensus_6818#2      ------------------------------------------------------------
consensus_6818#1      ------------------------------------------------------------
                                                                                  

consensus_6818#0      GACGACGGCGACGGTGGTGACAACAAGAAGGCGAGCAAGAAAGGGAAGAAGAAGAAGAAG 120
consensus_6818#2      ------------------------------------------------------------
consensus_6818#1      ------------------------------------------------------------
                                                                                  

consensus_6818#0      GAGAAGGACCCCTCAAAGCCGAAGCAGCCCATGTCCGCCTACTTCGTCTACACCCAGCAG 180
consensus_6818#2      ------------------------------------------------------------
consensus_6818#1      -------------------------------------------------------NAATT 5
                                                                                  

consensus_6818#0      CGCCGCGCGGCGCTCGTCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGG-------AT 233
consensus_6818#2      ----------------TCGCCGAGAAGAAGAACGTCCCCGAGATCGGCAGG-------AT 37
consensus_6818#1      GTTACCGGNCCCCCCCTCGANTTCGACCCACGCGTCCNAAAANTTGNCNCNCCNCCTTAC 65
                                      ***      *      *****   *  * * *          * 

consensus_6818#0      CACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGC 293
consensus_6818#2      CACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCGGCGGC 97
consensus_6818#1      CGCCGACCNNAACCGNCCCAAGAAGCCGGCTTCGTCGTTCCTGCTGTTCAGCAAGNANTC 125
                      * *** *    *  *      ** * * *   **  *     ** ****     *    *

consensus_6818#0      GCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGA 353
consensus_6818#2      GCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGA 157
consensus_6818#1      GAGNCGNCAGCTGNCGNAGGAGCGCCCCGNCGTGGCGAGNTCCACNCTGACCGCGCTCGT 185
                      * *    ***  *  * ** * *     *   *****   * *   * **    **  * 

consensus_6818#0      GGAGGCGGCGTGCCAGGAG---AAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGA 410
consensus_6818#2      GGAGGCGGCGTGCCAGGAG---AAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGA 214
consensus_6818#1      GTCGGTGAAGTGGNAGGANCTCGGGGANGCGGAGAAGCAGNCNTGGAACGGCAAGGCCGC 245
                      *  ** *  ***  ****       ** * **** *****     ** *   ***   * 

consensus_6818#0      GGCGCTCCAGCTGCTCAAGAAGAAGGAGAAGACGGACAACATCATCAAGAAGACCAAGGA 470
consensus_6818#2      GGCGCTCCAGCTGCTCAAGAAGAAGGAGAAG----------------------------- 245
consensus_6818#1      GGAGNCCATGGCGGCGTACAAGAGGGACATG----------------------------- 276
                      ** *  *  *  *    * **** *** * *                             

consensus_6818#0      GGAGCAGAGGAAGAAGAAGGTGGGCGGCGCCGCCGCTGCCGCCGACCCGAACCGGCCCAA 530
consensus_6818#2      ------------------------------------------------------------
consensus_6818#1      ------------------------------------------------------------
                                                                                  

consensus_6818#0      GAAGCCGGCGTCGTCGTTCCTGCTGTTCAGCAAGGAGGCGAGGCGGCAGCTGGCGGAGGA 590
consensus_6818#2      ------------------------------------------------------------
consensus_6818#1      ------------------------------------------------------------
                                                                                  

consensus_6818#0      GCGCCCCGGCGTGGCGAGCTCCACGCTGACCGCGCTCGTGTCGGTGAAGTGGAAGGAGCT 650
consensus_6818#2      ------------------------------------------------------------
consensus_6818#1      ------------------------------------------------------------
                                                                                  

consensus_6818#0      CGGGGAGGCGGAGAAGCAGGCGTGGAACGGCAAGGCCGCGGAGGCCATGGCGGCGTACAA 710
consensus_6818#2      ------------------------------------------------------------
consensus_6818#1      ------------------------------------------------------------
                                                                                  

consensus_6818#0      GAGGGACATGGAGGAGTACACCAAGGCGGCGGCCAGCGGCGGCGGCGGCGGCGACGCCTC 770
consensus_6818#2      -----------------------------------------------GCGGCGACGCCTC 258
consensus_6818#1      ----------GAGGNGTACACCAAGGCGGCGGCCAGCGGCNGCGGCGGCGGCGACGCCTC 326
                                                                     *************

consensus_6818#0      CCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGT 830
consensus_6818#2      CCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGT 318
consensus_6818#1      CCCCTGTACGTCCTCCTCGGCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGT 386
                      ************************************************************

consensus_6818#0      CCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGA 890
consensus_6818#2      CCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGAGAAAACAGTAGCTTTGGTGA 378
consensus_6818#1      CCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGGNGAAAACAGTAGCTTTGGTGA 446
                      *************************************** ********************

consensus_6818#0      TTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTG 950
consensus_6818#2      TTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTG 438
consensus_6818#1      TTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATTG 506
                      ************************************************************

consensus_6818#0      GGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATA 1010
consensus_6818#2      GGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGCTTATTTTCATA 498
consensus_6818#1      GGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGAGAAATTTCAGNTTATTTTCATA 566
                      ************************************************ ***********

consensus_6818#0      CA---- 1012
consensus_6818#2      AAAAAA 504
consensus_6818#1      AAAAA- 571
                       *