These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGGGGTGGAAAAAACCCTTTTTATTTATGAGTTATGTTTCTTACATAAAACAAAACAGCAGTTGATTTAATCTTTGGGACATCCCCCCCCCGACAAAAGTCCCTTTTGGGGGGGGAGGAATTTTGAACGACCCCAATGCAACAAAGTTGATCAGCGAGGATCTTGGGGGGGGACCATTTTTTTTTTCACTCAGCGGGCTTTATTTCCTGTTTGAGGGCCCCAACCAGTTGGTTGTAGGCTTCCCTCCACCCCCTTTTTATGGGGGGGCTCCACATGTCCATCGGAACCCCCTCCTTGATCGTTTAAAGC] [+] EMBL CF330734 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGGGGTGGAAAAAACCCTTTTTATTTATGAGTTATGTTTCTTACATAAAACAAAACAGCAGTTGATTTAATCTTTGGGACATCCCCCCCCCGACAAAAGTCCCTTTTGGGGGGGGAGGAATTTTGAACGACCCCAATGCAACAAAGTTGATCAGCGAGGATCTTGGGGGGGGACCATTTTTTTTTTCACTCAGCGGGCTTTATTTCCTGTTTGAGGGCCCCAACCAGTTGGTTGTAGGCTTCCCTCCACCCCCTTTTTATGGGGGGGCTCCACATGTCCATCGGAACCCCCTCCTTGATCGTTTAAAGC] consensusID : consensus_682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATAAAACAAAACAGCAGTTGATTTAATCTTTTGGACATACCCCCCCCCACAAAAGTCCCTTTTGGGGGGCGAGGAATTTTGAACCACCCCAATGCAACAAATTTGATCACCGAGGATCATGGGGGGGGACCATTTTTTTTTTTACTCAACAGGCTTTATTTCCTGTTTGATGGCCCCAACCAATTGGTTGTAGGCTTCCCTCCACCCCCTTTTTATTGGGGGGCTCCAAATGTCCACC] [+] EMBL CF318206 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATAAAACAAAACAGCAGTTGATTTAATCTTTTGGACATACCCCCCCCCACAAAAGTCCCTTTTGGGGGGCGAGGAATTTTGAACCACCCCAATGCAACAAATTTGATCACCGAGGATCATGGGGGGGGACCATTTTTTTTTTTACTCAACAGGCTTTATTTCCTGTTTGATGGCCCCAACCAATTGGTTGTAGGCTTCCCTCCACCCCCTTTTTATTGGGGGGCTCCAAATGTCCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_682#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGGGGTGGAAAAA 60 consensus_682#1 ---------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------- 35 *********************************** consensus_682#0 ACCCTTTTTATTTATGAGTTATGTTTCTTACATAAAACAAAACAGCAGTTGATTTAATCT 120 consensus_682#1 ----TTTTTTTTT----------TTTTTTACATAAAACAAAACAGCAGTTGATTTAATCT 81 ***** *** *** ********************************* consensus_682#0 TTGGGACATCCCCCCCCCGACAAAAGTCCCTTTTGGGGGGGGAGGAATTTTGAACGACCC 180 consensus_682#1 TTTGGACATACCCCCCCCCACAAAAGTCCCTTTTGGGGGGCGAGGAATTTTGAACCACCC 141 ** ****** ******** ********************* ************** **** consensus_682#0 CAATGCAACAAAGTTGATCAGCGAGGATCTTGGGGGGGGACCATTTTTTTTTTCACTCAG 240 consensus_682#1 CAATGCAACAAATTTGATCACCGAGGATCATGGGGGGGGACCATTTTTTTTTTTACTCAA 201 ************ ******* ******** *********************** ***** consensus_682#0 CGGGCTTTATTTCCTGTTTGAGGGCCCCAACCAGTTGGTTGTAGGCTTCCCTCCACCCCC 300 consensus_682#1 CAGGCTTTATTTCCTGTTTGATGGCCCCAACCAATTGGTTGTAGGCTTCCCTCCACCCCC 261 * ******************* *********** ************************** consensus_682#0 TTTTTATGGGGGGGCTCCACATGTCCATCGGAACCCCCTCCTTGATCGTTTAAAGC 356 consensus_682#1 TTTTTATTGGGGGGCTCCAAATGTCCACC--------------------------- 290 ******* *********** ******* * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||