Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6822 cluster # 6822       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6822#0 length = 976 sequences # 4  
consensusID : consensus_6822#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 976
fasta sequence 
                              [GAGTAGAAACCACCTCGCCTCGCATCCACCGTGAGCGGAGCGCCAACTCGCTAGCAAATCAGAAGAGGAGGTTAGAGTTTCGTCGTGAGCGAGCGAGAGTCATGGAGGCGGACAAGAGCGGGGAGGGGGAGAAGGCCGGCGGCAAGACGATCTCCTTCAGGTGCTCGGACGGACAGGCCTTCCACATGCCGGTGGCCGCGGCGATGCTAAGCACGGCCATCCGCAAAATGTTCGACAAGTACCCCAGCATCGACCACGGCGGCGTGATCGAGCTCCCCCACCAAATCTCCTCCGGTATCTTCCCCAAGGTCAAGGAATACTGCACCAAGCACGCCAAGGTCGACGACAAGGGCAACCCCACCGTCTCCACCAACACCGGCGCGGCGGCGGCGGCGTCAAGCAGCAGCACCGACGACGAGGAGGAGGACCTCAAGAACTGGGACAA-GGAGTTTGTCAACAT-GGAGGTGAAGCCCCTCCACGACCTCCTCCTCGTCGCCCACCTACTCGACATCAAAGGCCTCTTCCACATCACCTGCCGCAAGGTCGCCGACATGCTCAAGGGCAAGACCTCCGAGGAGATGCGCCAGATCCTCAACATCCGCAACGACTTCACCGAGGAAGAAGACAAGGCAATCAAGGAGCAGAACCCCTGGGTCTTCCCGGATCCGGAGTAGAAGCTAGCGTCCCCTCCCTCCCCGATCGAGCATCTGCTCTGCTCATCATCGCTTAACCCGTCGCGTGTGGTTGCTCCCCGTAGTTATCTCTGGTAGGTTCGTTCAGAACTTCAGATCGAATCGGCGTTCTTGCCTTTTTACCTTTCCTTTGCATCATGTCCAACTAGAACAGAATCTGGTGTGTGTCGATCGAAATGTTCAACTGCTTAATTGTTTGCATCAACTGAAATGTTTTGCCCCTGCCGCTTTATGCTGATCTGTTCCTGCATGCAGTTGATTAATTAGTCATATTAAATGATTTC]

[+] EMBL CF316393             [GAGTAGAAACCACCTCGCCTCGCATCCACCGTGAGCGGAGCGCCAACTCGCTAGCAAATCAGAAGAGGAGGTTAGAGTTTCGTCGTGAGCGAGCGAGAGTCATGGAGGCGGACAAGAGCGGGGAGGGGGAGAAGGCCGGCGGCAAGACGATCTCCTTCAGGTGCTCGGACGGACAGGCCTTCCACATGCCGGTGGCCGCGGCGATGCTAAGCACGGCCATCCGCAAAATGTTCGACAAGTACCCCAGCATCGACCACGGCGGCGTGATCGAGCTCCCCCACCAAATCTCCTCCGGTATCTTCCCCAAGGTCAAGGAATACTGCACCAAGCACGCCAAGGTCGACGACAAGGGCAACCCCACCGTCTCCACCAACACCGGCGCGGCGGCGGCGGCGTCAAGCAGCAGCACCGACGACGAGGAGGAGGACCTCAAGAACTGGGACAAGGGAGTTTGTCAACATGGGAGGTGAAGCCCCTCCACGACCTCCTCCTCGTCGCCCACCTACTCGACATCAAAGGCCTCTTCCACATCACCTGCCGCAAGGTCGCCGACATGCTCAAGGGCAAGACCTCCGAGGAGATGCGCCAGATCCTCAACAT                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK102131             [              TCGCCTCGCATCCACCGTGAGCGGAGCGCCAACTCGCTAGCAAATCAGAAGAGGAGGTTAGAGTTTCGTCGTGAGCGAGCGAGAGTCATGGAGGCGGACAAGAGCGGGGAGGGGGAGAAGGCCGGCGGCAAGACGATCTCCTTCAGGTGCTCGGACGGACAGGCCTTCCACATGCCGGTGGCCGCGGCGATGCTAAGCACGGCCATCCGCAAAATGTTCGACAAGTACCCCAGCATCGACCACGGCGGCGTGATCGAGCTCCCCCACCAAATCTCCTCCGGTATCTTCCCCAAGGTCAAGGAATACTGCACCAAGCACGCCAAGGTCGACGACAAGGGCAACCCCACCGTCTCCACCAACACCGGCGCGGCGGCGGCGGCGTCAAGCAGCAGCACCGACGACGAGGAGGAGGACCTCAAGAACTGGGACAA GGAGTTTGTCAACAT GGAGGTGAAGCCCCTCCACGACCTCCTCCTCGTCGCCCACCTACTCGACATCAAAGGCCTCTTCCACATCACCTGCCGCAAGGTCGCCGACATGCTCAAGGGCAAGACCTCCGAGGAGATGCGCCAGATCCTCAACATCCGCAACGACTTCACCGAGGAAGAAGACAAGGCAATCAAGGAGCAGAACCCCTGGGTCTTCCCGGATCCGGAGTAGAAGCTAGCGTCCCCTCCCTCCCCGATCGAGCATCTGCTCTGCTCATCATCGCTTAACCCGTCGCGTGTGGTTGCTCCCCGTAGTTATCTCTGGTAGGTTCGTTCAGAACTTCAGATCGAATCGGCGTTCTTGCCTTTTTACCTTTCCTTTGCATCATGTCCAACTAGAACAGAATCTGGTGTGTGTCGATCGAAATGTTCAACTGCTTAATTGTTTGCATCAACTGAAATGTTTTGCCC                                                               ]
[+] EMBL CB096706             [                                                                                                                                                                                                                                                                                                                                                                         CGTCTCCACCAACACCGGCGCGGCGGCGGCGGCGTCAAGCAGCAGCACCGACGACGAGGAGGAGGACCTCAAGAACTGGGACAA GGAGTTTGTCAACAT GGAGGTGAAGCCCCTCCACGACCTCCTCCTCGTCGCCCACCTACTCGACATCAAAGGCCTCTTCGACATCACCTGCCGCAAGGTCGCCGACATGCTCAAGGGCAAGACCTCCGAGGAGATGCGCCAGATCCTCAACATCCGCAACGACTTCACCGAGGAAGAAGACAAGGCAATCAAGGAGCAGAACCCCTGGGTCTTCCCGGATCCGGAGTAGAAGCTAGCGTCCCCTCCCTCCCCGATCGAGCATCTGCTCTGCTCATCATCGCTTAACCCGTCGCGTGTGGTTGCTCCCCGTAGTTATCTCTGGTAGGTTCGTTCAGAACTTCAGATCGAATCGGCGTTCTTGCCTTTTTACCTTTCCTTTGCATCATGTCCAACTAGAACAGAATCTGGTGTGTGTCGATCGAAATGTTCAACTGCTTAATTGTTTGCATCAACTGAAATGTTTTGCCCCTGCCGCTTTATGCTGATCTGTTCCTGCATGCAGTTGATTAATTAGTCATATTAAATGATTTC]
[-] EMBL CF316394             [                                                                                                                                                                                                                                                                                                                                                                                               GCGGCGGCGGCGTCAAGCAGCAGCACCGACGACGAGGAGGAGGACCTCAAGAACTGGGACAA GGAGTTTGTCAACAT GGAGGTGAAGCCCCTCCACGACCTCCTCCTCGTCGCCCACCTACTCGACATCAAAGGCCTCTTCCACATCACCTGCCGCAAGGTCGCCGACATGCTCAAGGGCAAGACCTCCGAGGAGATGCGCCAGATCCTCAACATCCGCAACGACTTCACCGAGGAAGAAGACAAGGCAATCAAGGAGCAGAACCCCTGGGTCTTCCCGGATCCGGAGTATAAGCTAGCGTCCCCTCCCTCCCCGATCGAGCATCTGCTCTGCTCATCATCGCTTAACCCGTCGCGTGTGGTTGCTCCCCGTAGTTATCTCTGGTAGGTTCGTTCAGAACTTCAGATCGAATCGGCGTTCTTGCCTTTTTACCTTTCCTTTGCATCATGTCCAACCAGAACAGAATCTGGCGTGTGTCGATCGAAATGTTCAACTGCTTAATTGTTTGCATCAAaaaa                                                                           ]




>consensus_6822#0
GAGTAGAAACCACCTCGCCTCGCATCCACCGTGAGCGGAGCGCCAACTCGCTAGCAAATC
AGAAGAGGAGGTTAGAGTTTCGTCGTGAGCGAGCGAGAGTCATGGAGGCGGACAAGAGCG
GGGAGGGGGAGAAGGCCGGCGGCAAGACGATCTCCTTCAGGTGCTCGGACGGACAGGCCT
TCCACATGCCGGTGGCCGCGGCGATGCTAAGCACGGCCATCCGCAAAATGTTCGACAAGT
ACCCCAGCATCGACCACGGCGGCGTGATCGAGCTCCCCCACCAAATCTCCTCCGGTATCT
TCCCCAAGGTCAAGGAATACTGCACCAAGCACGCCAAGGTCGACGACAAGGGCAACCCCA
CCGTCTCCACCAACACCGGCGCGGCGGCGGCGGCGTCAAGCAGCAGCACCGACGACGAGG
AGGAGGACCTCAAGAACTGGGACAAGGAGTTTGTCAACATGGAGGTGAAGCCCCTCCACG
ACCTCCTCCTCGTCGCCCACCTACTCGACATCAAAGGCCTCTTCCACATCACCTGCCGCA
AGGTCGCCGACATGCTCAAGGGCAAGACCTCCGAGGAGATGCGCCAGATCCTCAACATCC
GCAACGACTTCACCGAGGAAGAAGACAAGGCAATCAAGGAGCAGAACCCCTGGGTCTTCC
CGGATCCGGAGTAGAAGCTAGCGTCCCCTCCCTCCCCGATCGAGCATCTGCTCTGCTCAT
CATCGCTTAACCCGTCGCGTGTGGTTGCTCCCCGTAGTTATCTCTGGTAGGTTCGTTCAG
AACTTCAGATCGAATCGGCGTTCTTGCCTTTTTACCTTTCCTTTGCATCATGTCCAACTA
GAACAGAATCTGGTGTGTGTCGATCGAAATGTTCAACTGCTTAATTGTTTGCATCAACTG
AAATGTTTTGCCCCTGCCGCTTTATGCTGATCTGTTCCTGCATGCAGTTGATTAATTAGT
CATATTAAATGATTTC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)