cluster # 6839

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Oryza sativa
cluster # 6839 cluster # 6839 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6839#0 length = 690 sequences # 3

consensus_6839#1 length = 603 sequences # 1

consensusID : consensus_6839#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 690
fasta sequence

                              [CAACCCCCCACCACCGCGGCCGATGTCCACCCTCTCCCCGGACGGCGACTCCGACTACGGCGGCGGCGGCGGCGGCGGCGAAGCAGCCGGAGCAGTGATGGCCGACGTCCTCTCCAAGGGCCGGGAAGCCTGCTACAAGGCCCGGGACGCCTTCTACACGTGCGTGGAGAAGCACGCGGACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCCTCTACCCCGCCGACTGCAAGAAGTCCCGCGCCAACTTCGTCAACAGCTGCCGCCCCTCCTGGGTGAAGCACTTCGACCGGCAGTACTCCGCCAAGAAGCGGGTGCAGCGGCTGCTCGACGGCGGCGACGACCGCCGGG-GCCCCATCTCGCTCCCCCAGCCGTACACGTTCAAGCAATAGGTAGCTAGCTCTGCTGCTGGTTCCGTCCCTCGGTACCGAGCTGAATTACATCTTTGCGTCGGAGACTGGATGCGGCAGTATTTGTTTCAGATTTGGTGGTGTTAAGATGGAAGGCATATGCCTCTGCTTTCTAGTACGTTGGTATGAATTGTGAATGGATGAGAAAGAACTTGCCTATGACTTTTATCGCAATCAAGATCTTGTTGTGGTAGTGTTTATATCTTTGTTGCAATACATTGGTACTGTCCATAATCCTCACTATAATTTCTGCTGTTTGATGCTTTATTTCAAAAAAA]

[+] EMBL AK063317             [CAACCCCCCACCACCGCGGCCGATGTCCACCCTCTCCCCGGACGGCGACTCCGACTACGGCGGCGGCGGCGGCGGCGGCGAAGCAGCCGGAGCAGTGATGGCCGACGTCCTCTCCAAGGGCCGGGAAGCCTGCTACAAGGCCCGGGACGCCTTCTACACGTGCGTGGAGAAGCACGCGGACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCCTCTACCCCGCCGACTGCAAGAAGTCCCGCGCCAACTTCGTCAACAGCTGCCGCCCCTCCTGGGTGAAGCACTTCGACCGGCAGTACTCCGCCAAGAAGCGGGTGCAGCGGCTGCTCGACGGCGGCGACGACCGCCGGG GCCCCATCTCGCTCCCCCAGCCGTACACGTTCAAGCAATAGGTAGCTAGCTCTGCTGCTGGTTCCGTCCCTCGGTACCGAGCTGAATTACATCTTTGCGTCGGAGACTGGATGCGGCAGTATTTGTTTCAGATTTGGTGGTGTTAAGATGGAAGGCATATGCCTCTGCTTTCTAGTACGTTGGTATGAATTGTGAATGGATGAGAAA                                                                                                                                  ]
[+] EMBL OS1321898            [                                                                                                                                                                                                        CCACCATGGGGCTCCTCTACCCCGCCGACTGCAAGAAGTCCCGCGCCAACTTCGTCAACAGCTGCCGCCCCTCCTGGGTGAAGCACTTCGACCGGCAGTACTCCGCCAAGAAGCGGGTGCAGCGGCTGCTCGACGGCGGCGACGACCGCCGGGNGCCCCATCTNGCTCCCCCAGCCGTACACGTTCAAGCAATAGGTAGCTAGCTCTGCTGCTGGTTCCGTCCCTCGGTACCGAGCTGAATTACATCTTTGCGTCGGAGACTGGATGCGGCAGTATTTGTTTCAGATTTGGTGGTGTTAAGATGGAAGGCA                                                                                                                                                                                    ]
[+] EMBL AU174410             [                                                                                                                                                                                                                                                            CGTCAACAGCTGCCGCCCCTCCTGGGTGAAGCACTTCGACCGGCAGTACTCCGCCAAGAAGCGGGTGCAGCGGCTGCTCGACGGCGGCGACGACCGCCGGG GCCCCATCTCGCTCCCCCAGCCGTACACGTTCAAGCAATAGGTAGCTAGCTCTGCTGCTGGTTCCGTCCCTCGGTACCGAGCTGAATTACATCTTTGCGTCGGAGACTGGATGCGGCAGTATTTGTTTCAGATTTGGTGGTGTTAAGATGGAAGGCATATGCCTCTGCTTTCTAGTACGTTGGTATGAATTGTGAATGGATGAGAAAGAACTTGCCTATGACTTTTATCGCAATCAAGATCTTGTTGTGGTAGTGTTTATATCTTTGTTGCAATACATTGGTACTGTCCATAATCCTCACTATAATTTCTGCTGTTTGATGCTTTATTTCAAAAAAA]




>consensus_6839#0
CAACCCCCCACCACCGCGGCCGATGTCCACCCTCTCCCCGGACGGCGACTCCGACTACGG
CGGCGGCGGCGGCGGCGGCGAAGCAGCCGGAGCAGTGATGGCCGACGTCCTCTCCAAGGG
CCGGGAAGCCTGCTACAAGGCCCGGGACGCCTTCTACACGTGCGTGGAGAAGCACGCGGA
CAAGAAGCCCACCGAGATCGCCACCATGGGGCTCCTCTACCCCGCCGACTGCAAGAAGTC
CCGCGCCAACTTCGTCAACAGCTGCCGCCCCTCCTGGGTGAAGCACTTCGACCGGCAGTA
CTCCGCCAAGAAGCGGGTGCAGCGGCTGCTCGACGGCGGCGACGACCGCCGGGGCCCCAT
CTCGCTCCCCCAGCCGTACACGTTCAAGCAATAGGTAGCTAGCTCTGCTGCTGGTTCCGT
CCCTCGGTACCGAGCTGAATTACATCTTTGCGTCGGAGACTGGATGCGGCAGTATTTGTT
TCAGATTTGGTGGTGTTAAGATGGAAGGCATATGCCTCTGCTTTCTAGTACGTTGGTATG
AATTGTGAATGGATGAGAAAGAACTTGCCTATGACTTTTATCGCAATCAAGATCTTGTTG
TGGTAGTGTTTATATCTTTGTTGCAATACATTGGTACTGTCCATAATCCTCACTATAATT
TCTGCTGTTTGATGCTTTATTTCAAAAAAA

consensusID : consensus_6839#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [TCCAACCCCCCACCACCGCGGCCGATGTCCACCCTCTCCCCGGACGGCGACTCCGACTACGGCGGCGGCGGCGGCGGCGGCGAAGCAGCCGGAGCAGTGATGGCCGACGTCCTCTCCAAGGGCCGGGAAGCCTGCTACAAGGCCCGGGACGCCTTCTACACGTGCGTGGAGAAGCACGCGGACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCCTCTACCCCGCCGACTGCAAGAAGTCCCGCGCCAACTTCGTCAACAGCTGCCGCCCCTCCTGGGTGAAGCACTTCGACCGGCAGTACTCCGCCAAGAAGCGGGTGCAGCGGCTGCTCGACGGCGGCGACGACCGCCGGGGCCCCATCTCGCTCCCCCAGCCGTACACGTTCAAGCAATAGGGAAAAGCTTGTCAAAGACTCGAAATGCTTTCATAATCAATGGAAATGGAGATGTTGGTTATGACTGGGCTGGTAGTTTGTTTATGTGTATATAAGAATATAATAATAGTGTTTATAGTTCTGTAAATTGGGTTCTTGAAAGTATATCACTTGATAGTTGTAATCATGTATTTGTATTTATGTGAAATTCACACACATAGGAACAAT]

[+] EMBL AK064141             [TCCAACCCCCCACCACCGCGGCCGATGTCCACCCTCTCCCCGGACGGCGACTCCGACTACGGCGGCGGCGGCGGCGGCGGCGAAGCAGCCGGAGCAGTGATGGCCGACGTCCTCTCCAAGGGCCGGGAAGCCTGCTACAAGGCCCGGGACGCCTTCTACACGTGCGTGGAGAAGCACGCGGACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCCTCTACCCCGCCGACTGCAAGAAGTCCCGCGCCAACTTCGTCAACAGCTGCCGCCCCTCCTGGGTGAAGCACTTCGACCGGCAGTACTCCGCCAAGAAGCGGGTGCAGCGGCTGCTCGACGGCGGCGACGACCGCCGGGGCCCCATCTCGCTCCCCCAGCCGTACACGTTCAAGCAATAGGGAAAAGCTTGTCAAAGACTCGAAATGCTTTCATAATCAATGGAAATGGAGATGTTGGTTATGACTGGGCTGGTAGTTTGTTTATGTGTATATAAGAATATAATAATAGTGTTTATAGTTCTGTAAATTGGGTTCTTGAAAGTATATCACTTGATAGTTGTAATCATGTATTTGTATTTATGTGAAATTCACACACATAGGAACAAT]




>consensus_6839#1
TCCAACCCCCCACCACCGCGGCCGATGTCCACCCTCTCCCCGGACGGCGACTCCGACTAC
GGCGGCGGCGGCGGCGGCGGCGAAGCAGCCGGAGCAGTGATGGCCGACGTCCTCTCCAAG
GGCCGGGAAGCCTGCTACAAGGCCCGGGACGCCTTCTACACGTGCGTGGAGAAGCACGCG
GACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCCTCTACCCCGCCGACTGCAAGAAG
TCCCGCGCCAACTTCGTCAACAGCTGCCGCCCCTCCTGGGTGAAGCACTTCGACCGGCAG
TACTCCGCCAAGAAGCGGGTGCAGCGGCTGCTCGACGGCGGCGACGACCGCCGGGGCCCC
ATCTCGCTCCCCCAGCCGTACACGTTCAAGCAATAGGGAAAAGCTTGTCAAAGACTCGAA
ATGCTTTCATAATCAATGGAAATGGAGATGTTGGTTATGACTGGGCTGGTAGTTTGTTTA
TGTGTATATAAGAATATAATAATAGTGTTTATAGTTCTGTAAATTGGGTTCTTGAAAGTA
TATCACTTGATAGTTGTAATCATGTATTTGTATTTATGTGAAATTCACACACATAGGAAC
AAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6839#0      --CAACCCCCCACCACCGCGGCCGATGTCCACCCTCTCCCCGGACGGCGACTCCGACTAC 58
consensus_6839#1      TCCAACCCCCCACCACCGCGGCCGATGTCCACCCTCTCCCCGGACGGCGACTCCGACTAC 60
                        **********************************************************

consensus_6839#0      GGCGGCGGCGGCGGCGGCGGCGAAGCAGCCGGAGCAGTGATGGCCGACGTCCTCTCCAAG 118
consensus_6839#1      GGCGGCGGCGGCGGCGGCGGCGAAGCAGCCGGAGCAGTGATGGCCGACGTCCTCTCCAAG 120
                      ************************************************************

consensus_6839#0      GGCCGGGAAGCCTGCTACAAGGCCCGGGACGCCTTCTACACGTGCGTGGAGAAGCACGCG 178
consensus_6839#1      GGCCGGGAAGCCTGCTACAAGGCCCGGGACGCCTTCTACACGTGCGTGGAGAAGCACGCG 180
                      ************************************************************

consensus_6839#0      GACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCCTCTACCCCGCCGACTGCAAGAAG 238
consensus_6839#1      GACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCCTCTACCCCGCCGACTGCAAGAAG 240
                      ************************************************************

consensus_6839#0      TCCCGCGCCAACTTCGTCAACAGCTGCCGCCCCTCCTGGGTGAAGCACTTCGACCGGCAG 298
consensus_6839#1      TCCCGCGCCAACTTCGTCAACAGCTGCCGCCCCTCCTGGGTGAAGCACTTCGACCGGCAG 300
                      ************************************************************

consensus_6839#0      TACTCCGCCAAGAAGCGGGTGCAGCGGCTGCTCGACGGCGGCGACGACCGCCGGGGCCCC 358
consensus_6839#1      TACTCCGCCAAGAAGCGGGTGCAGCGGCTGCTCGACGGCGGCGACGACCGCCGGGGCCCC 360
                      ************************************************************

consensus_6839#0      ATCTCGCTCCCCCAGCCGTACACGTTCAAGCAATAGGTAGCTAGCTCTGCTGCTGGTTCC 418
consensus_6839#1      ATCTCGCTCCCCCAGCCGTACACGTTCAAGCAATAGGGAA--AAGCTTGTCAAAGACTCG 418
                      ************************************* *   *    **     *  ** 

consensus_6839#0      G--TCCCTCGGTACCGAGCTGAATTACATCTTTGCGTCGGAGACTGGATGCGGCAGTATT 476
consensus_6839#1      AAATGCTTTCATAATCAATGGAAATGGAGATGTTGGTTAT-GACTGGGC-TGGTAG--TT 474
                         * * *   **   *   *** *  *  * *  **    ******    ** **  **

consensus_6839#0      TGTTTCAGATTTGGTGGTGTTAAGATGGAAG-GCATATGCCTCTGCTTTCTAGTACGTTG 535
consensus_6839#1      TGTTTATGTGTATATAAGAATATAATAATAGTGTTTATAGTTCTGTAAATTGGGTTCTTG 534
                      *****  *  *   *     **  **   ** *  ***   ****     * *    ***

consensus_6839#0      GTATGAATTGTGAATGGATGAGAAAGAACTTGCCTATGACTTTTATCGCAATCAAGATCT 595
consensus_6839#1      AAAGTA--TATCACTTGATAGTTGTAATCATGTATTTGTATTTATGTGAAATTCACA-CA 591
                        *  *  * * * * ***       * * **  * **  ***    * ***  * * * 

consensus_6839#0      TGTTGTGGTAGTGTTTATATCTTTGTTGCAATACATTGGTACTGTCCATAATCCTCACTA 655
consensus_6839#1      CATAGGAACAAT------------------------------------------------ 603
                        * *    * *                                                

consensus_6839#0      TAATTTCTGCTGTTTGATGCTTTATTTCAAAAAAA 690
consensus_6839#1      -----------------------------------