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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1771 fasta sequence
[AGAGGAGATCCCAAGCAGCGGAGAGCTTCAGCTTCAGCTCCCCACGGCGGCGCCGCCCACCACGTCGCCGACAAGCTCAGGAGGCACTCCACCTTCCTCCTCCTCCTCCTCCTCCTCTGGTTCGCCCTCTCCCTCTACCTCTTCCTCTCCGCCACCCCGCCGCCCCCACGCCCCGCCTTCCTCCCTTCCACTTCCACCCCCCGCCCCGCCCTCCGGATCTACGTCTACGACCTCCCCGCCCGCTTCAACCGCCACTGGGTCGCCGCCGACGCGCGCTGCGCCACCCACCTCTTCGCCGCCGAGGTCGCGCTGCACGAGGCGCTGCTGGCCTACGCTGGCCGCGCCGCGCGTCCCGACGACGCCACCCTCTTCTTCGTCCCCGTCTACGTCTCCTGCAACTTCTCCACCGACAACGGCTTCCCCTCGCTCTCGCACGCCCGCGCCCTGCTCGCCGACGCGGTCGACCTCGTCCGGGCCCAGATGCCCTACTGGAACCGCTCCGCCGGCGCGGACCACGTGTTCGTCGCGTCGCACGACTTCGGCGCCTGCTTCCATCCCATGGAGGACGTAGCTATTGCGGATGGCATACCGGAATTCCTCAAGAGGTCAATCCTGCTACAAACGTTCGGCGTACAGGGCACTCATGTGTGCCAGGAGGCGGATCATGTGGTAATCCCGCCTCATGTGCCTCCGGAGGTGGCCCTCGAGCTACCTGAGCCAGAGAAGGCACAAAGGGATATTTTTGCCTTCTTCCGGGGCAAGATGGAGGTCCACCCCAAGAACATTAGTGGGCGCTTCTACAGCAAGAAAGTGAGGACTGAGCTGCTACAAAAGTACGGAAGGAATCGCAAGTTCTACCTTAAGCGAAAGCGGTATGGTAACTATCGATCAGAGATGGCTCGCTCCTTGTTCTGCCTCTGCCCACTAGGATGGGCTCCATGGAGCCCACGGCTCGTGGAGTCGGTTCTCCTTGGCTGCATTCCTGTCATAATTGCCGATGATATACGCCTGCCGTTCCCTTCTGTACTACAGTGGTTAGACATCTCGTTGCAAGTGGCTGAGAAGGATGTTGCAAGTCTTGAGATGGTGCTAGACCATGTTGTAGCGACCAACTTAACTGTAATACAGAAGAACTTGTGGGACCCTGTGAAGCGGAAAGCACTGGTTTTTAACCGTCCGATGGAAGAAGGAGATGCCACATGGCAAGTGCTGAGGGAGCTTGAGATTTTGCTAGACCGTTCTCAAAGGAGGCATGTTGAATCATGGAAGAGGTGAAGACCACAGAGGGGAGGGATCTTTCCC-TACTTGCTGAAATGTGGCATGTGATCAGTCGCAGC-TGTGACAACAATGACGTGCAGCTTGCACATGCCACTCAACTGACAAAACAAATCAATATTTGATCGACACCATCCATAGCAAGGACCTTCTCCATGAGAAATTCAGAATGCCAGTTTCTCACATTCAATCATATTCTTGAATGGTGAACTGTGTAGTTGGCAATTGACTAAGTAATTTGAATGTGCAATCAGAGAAGCGCA-TTCTAGGCTAACAAGTTGGCGAGCTCTGTGCA-GGGAATTAGTTTATTCTTTATTATTGGGAGAAATGTGAATCTCCTTTTTTTTTTTCTTGAGAGAGAGAGAGATTAAAATTGTGTTATAGAACGATGATCTGTGAAGGTCTTCGGATATGTTTGCAATGTTGTACTATTGTATACCCAATTCTTTTAAAACAGAAAGGTGTTCTTCTTGAACACATGGTATCAAAAAAAAAA]
[+] EMBL AK109533 [AGAGGAGATCCCAAGCAGCGGAGAGCTTCAGCTTCAGCTCCCCACGGCGGCGCCGCCCACCACGTCGCCGACAAGCTCAGGAGGCACTCCACCTTCCTCCTCCTCCTCCTCCTCCTCTGGTTCGCCCTCTCCCTCTACCTCTTCCTCTCCGCCACCCCGCCGCCCCCACGCCCCGCCTTCCTCCCTTCCACTTCCACCCCCCGCCCCGCCCTCCGGATCTACGTCTACGACCTCCCCGCCCGCTTCAACCGCCACTGGGTCGCCGCCGACGCGCGCTGCGCCACCCACCTCTTCGCCGCCGAGGTCGCGCTGCACGAGGCGCTGCTGGCCTACGCTGGCCGCGCCGCGCGTCCCGACGACGCCACCCTCTTCTTCGTCCCCGTCTACGTCTCCTGCAACTTCTCCACCGACAACGGCTTCCCCTCGCTCTCGCACGCCCGCGCCCTGCTCGCCGACGCGGTCGACCTCGTCCGGGCCCAGATGCCCTACTGGAACCGCTCCGCCGGCGCGGACCACGTGTTCGTCGCGTCGCACGACTTCGGCGCCTGCTTCCATCCCATGGAGGACGTAGCTATTGCGGATGGCATACCGGAATTCCTCAAGAGGTCAATCCTGCTACAAACGTTCGGCGTACAGGGCACTCATGTGTGCCAGGAGGCGGATCATGTGGTAATCCCGCCTCATGTGCCTCCGGAGGTGGCCCTCGAGCTACCTGAGCCAGAGAAGGCACAAAGGGATATTTTTGCCTTCTTCCGGGGCAAGATGGAGGTCCACCCCAAGAACATTAGTGGGCGCTTCTACAGCAAGAAAGTGAGGACTGAGCTGCTACAAAAGTACGGAAGGAATCGCAAGTTCTACCTTAAGCGAAAGCGGTATGGTAACTATCGATCAGAGATGGCTCGCTCCTTGTTCTGCCTCTGCCCACTAGGATGGGCTCCATGGAGCCCACGGCTCGTGGAGTCGGTTCTCCTTGGCTGCATTCCTGTCATAATTGCCGATGATATACGCCTGCCGTTCCCTTCTGTACTACAGTGGTTAGACATCTCGTTGCAAGTGGCTGAGAAGGATGTTGCAAGTCTTGAGATGGTGCTAGACCATGTTGTAGCGACCAACTTAACTGTAATACAGAAGAACTTGTGGGACCCTGTGAAGCGGAAAGCACTGGTTTTTAACCGTCCGATGGAAGAAGGAGATGCCACATGGCAAGTGCTGAGGGAGCTTGAGATTTTGCTAGACCGTTCTCAAAGGAGGCATGTTGAATCATGGAAGAGGTGAAGACCACAGAGGGGAGGGATCTTTCCC TACTTGCTGAAATGTGGCATGTGATCAGTCGCAGC TGTGACAACAATGACGTGCAGCTTGCACATGCCACTCAACTGACAAAACAAATCAATATTTGATCGACACCATCCATAGCAAGGACCTTCTCCATGAGAAATTCAGAATGCCAGTTTCTCACATTCAATCATATTCTTGAATGGTGAACTGTGTAGTTGGCAATTGACTAAGTAATTTGAATGTGCAATCAGAGAAGCGCA TTCTAGGCTAACAAGTTGGCGAGCTCTGTGCA GGGAATTAGTTTATTCTTTATTATTGGGAGAAATGTGAATCTCCTTTTTTTTTTTCTTGAGAGAGAGAGAGATTAAAATTGTGTTATAGAACGATGATCTGTGAAGGTCTTCGGATATGTTTGCAATGTTGTACTATTGTATACCCAATTCTTTTAAAACAGAAAGG ]
[+] EMBL AU030850 [ ACTCATGTGTGCCAGGAGGCGGATCATGTGGTAATCCCGCCTCATGTGCCTCCGGAGGTGGCCCTCGAGCTACCTGAGCCAGAGAAGGCACAAAGGGATATTTTTGCCTTCTTCCGGGGCAAGATGGAGGTCCACCCCAAGAACATTAGTGGGCGCTTCTACAGCAAGAAAGTGAGGACTGAGCTGCTACAAAAGTACGGAAGGAATCGCAAGTTCTACCTTAAGCGAAA CGGTATGGTAACTATCGATCAGAGATGGCTCGCTCCTTGTTCTGCCTCTGCCCACTAGGATGGGCTCCATGGAG CCACGGCTCGTGGAATCGGTTCTCCTTGGCTGCATTCCTGTCATAATTGCCGATGATAT ]
[+] EMBL BI806646 [ TGCTGA GGAGCTTGAGATTTTGCTAGACCGTTCTCCAAGGA GCATGTTGAATCATGGAAGA GTGAAGACCACAGAGGGGAGGGATCTTTCCCGTACTTGCTGAAATGTGGCATGTGATCAGTCGCAGCGNGTGAC ACAATGACGTGCAGCTTGCACATGCCACTCAACTGACCAAACCAATC ATATTTGATCGACACCATCCATAGCAAGGACCTTCTCCATGAGAAATTCAGAATGCCCGTTTCTCACATTCAATCATATTCTTGAATGGTGAACTGTGTAGTTGGCCATTGACTAAGTAATTTGAATGTNCCATCAGAGAAGCGCANTTCTAGGCTAACCAGTTGGCGAGCTCTGTGCACGGGAATTAGTTTATTCTTTATTATTGGGAGAAATGTGAATCTCC TTTTNCTTTTCTTGAGAGAGAGAGAGATTAAAATTGTGTTATAGAACGATGATCTGTGAAGGTCTTCGGATATGTTT C ATGTTGTACTATTGTATACCCCATTCTTTTAAAAC GAAAGGTGTTCTTCTTGAACACATGGTATCAAAAAAAAAA]
consensusID : consensus_6848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence
[AGTTTATTCTTTATTATTGGGGGAAATNTGAATCNCCTTTTTTTTTTCTTGNGAGAGAGAGNGATTAAAATTGTGTTNTNGANCGATGATCTGTGAAGGTCTTCGGATATGTTTGCAATGTTGTACTATTGTATACCCAATTNTTTTAAAACAGAAAGGTGTTNTTTTGAACACNTGGTNTCAACAAAACNTNGCAAGGGATNCAGNNGGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU091442 [AGTTTATTCTTTATTATTGGGGGAAATNTGAATCNCCTTTTTTTTTTCTTGNGAGAGAGAGNGATTAAAATTGTGTTNTNGANCGATGATCTGTGAAGGTCTTCGGATATGTTTGCAATGTTGTACTATTGTATACCCAATTNTTTTAAAACAGAAAGGTGTTNTTTTGAACACNTGGTNTCAACAAAACNTNGCAAGGGATNCAGNNGGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6848#0 AGAGGAGATCCCAAGCAGCGGAGAGCTTCAGCTTCAGCTCCCCACGGCGGCGCCGCCCAC 60
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 CACGTCGCCGACAAGCTCAGGAGGCACTCCACCTTCCTCCTCCTCCTCCTCCTCCTCTGG 120
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 TTCGCCCTCTCCCTCTACCTCTTCCTCTCCGCCACCCCGCCGCCCCCACGCCCCGCCTTC 180
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 CTCCCTTCCACTTCCACCCCCCGCCCCGCCCTCCGGATCTACGTCTACGACCTCCCCGCC 240
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 CGCTTCAACCGCCACTGGGTCGCCGCCGACGCGCGCTGCGCCACCCACCTCTTCGCCGCC 300
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 GAGGTCGCGCTGCACGAGGCGCTGCTGGCCTACGCTGGCCGCGCCGCGCGTCCCGACGAC 360
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 GCCACCCTCTTCTTCGTCCCCGTCTACGTCTCCTGCAACTTCTCCACCGACAACGGCTTC 420
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 CCCTCGCTCTCGCACGCCCGCGCCCTGCTCGCCGACGCGGTCGACCTCGTCCGGGCCCAG 480
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 ATGCCCTACTGGAACCGCTCCGCCGGCGCGGACCACGTGTTCGTCGCGTCGCACGACTTC 540
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 GGCGCCTGCTTCCATCCCATGGAGGACGTAGCTATTGCGGATGGCATACCGGAATTCCTC 600
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 AAGAGGTCAATCCTGCTACAAACGTTCGGCGTACAGGGCACTCATGTGTGCCAGGAGGCG 660
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 GATCATGTGGTAATCCCGCCTCATGTGCCTCCGGAGGTGGCCCTCGAGCTACCTGAGCCA 720
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 GAGAAGGCACAAAGGGATATTTTTGCCTTCTTCCGGGGCAAGATGGAGGTCCACCCCAAG 780
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 AACATTAGTGGGCGCTTCTACAGCAAGAAAGTGAGGACTGAGCTGCTACAAAAGTACGGA 840
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 AGGAATCGCAAGTTCTACCTTAAGCGAAAGCGGTATGGTAACTATCGATCAGAGATGGCT 900
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 CGCTCCTTGTTCTGCCTCTGCCCACTAGGATGGGCTCCATGGAGCCCACGGCTCGTGGAG 960
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 TCGGTTCTCCTTGGCTGCATTCCTGTCATAATTGCCGATGATATACGCCTGCCGTTCCCT 1020
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 TCTGTACTACAGTGGTTAGACATCTCGTTGCAAGTGGCTGAGAAGGATGTTGCAAGTCTT 1080
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 GAGATGGTGCTAGACCATGTTGTAGCGACCAACTTAACTGTAATACAGAAGAACTTGTGG 1140
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 GACCCTGTGAAGCGGAAAGCACTGGTTTTTAACCGTCCGATGGAAGAAGGAGATGCCACA 1200
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 TGGCAAGTGCTGAGGGAGCTTGAGATTTTGCTAGACCGTTCTCAAAGGAGGCATGTTGAA 1260
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 TCATGGAAGAGGTGAAGACCACAGAGGGGAGGGATCTTTCCCTACTTGCTGAAATGTGGC 1320
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 ATGTGATCAGTCGCAGCTGTGACAACAATGACGTGCAGCTTGCACATGCCACTCAACTGA 1380
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 CAAAACAAATCAATATTTGATCGACACCATCCATAGCAAGGACCTTCTCCATGAGAAATT 1440
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 CAGAATGCCAGTTTCTCACATTCAATCATATTCTTGAATGGTGAACTGTGTAGTTGGCAA 1500
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 TTGACTAAGTAATTTGAATGTGCAATCAGAGAAGCGCATTCTAGGCTAACAAGTTGGCGA 1560
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 GCTCTGTGCAGGGAATTAGTTTATTCTTTATTATTGGGAGAAATGTGAATCTCCTTTTTT 1620
consensus_6848#1 -----------------AGTTTATTCTTTATTATTGGGGGAAATNTGAATCNCCTTTTTT 43
********************* ***** ****** ********
consensus_6848#0 TTTTTCTTGAGAGAGAGAGAGATTAAAATTGTGTTATAGAACGATGATCTGTGAAGGTCT 1680
consensus_6848#1 TTTT-CTTGNGAGAGAGAGNGATTAAAATTGTGTTNTNGANCGATGATCTGTGAAGGTCT 102
**** **** ********* *************** * ** *******************
consensus_6848#0 TCGGATATGTTTGCAATGTTGTACTATTGTATACCCAATTCTTTTAAAACAGAAAGGTGT 1740
consensus_6848#1 TCGGATATGTTTGCAATGTTGTACTATTGTATACCCAATTNTTTTAAAACAGAAAGGTGT 162
**************************************** *******************
consensus_6848#0 TCTTCTTGAACACATGGTATCAAAAAAAAAA----------------------------- 1771
consensus_6848#1 TNTT-TTGAACACNTGGTNTCAACAAAACNTNGCAAGGGATNCAGNNGGTNAAAAAAAAA 221
* ** ******** **** **** ****
consensus_6848#0 --------------------------------------------
consensus_6848#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 265
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||