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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1736 fasta sequence
[AAATAATAATGGCAGCTCCCACCTCCATGGCGAACGCGGATGGCGAGAGCACGCGCACCGGCTACTGCGCCGCGACCAAGTCGTTCCGCAGCCTCCGGCCGCCGGTGCCGCTGCCTCCGCCGGACGTCCCGCTCTCCTTCCCGGAGTTCGCGTTCTCGCTGCTGCCGCGGTCGTCGTCGTCGTCGTCGTCGTCTCTTCTCCCGGCGAACCCGGCGCTCGTCGACGCGGCCACTGGCGAGGCCGTCTCGTTCCAGGCGTTCCTGTCGCGGGTGCGCGCGCTCGCCGGAGCCCTCCGCTCGCGCGTCGGGCTGCGCGGCGGCGACGTCGCGTTCGTGCTCGCGCCCGCAGGGCTCGACGTGCCCGTGCTGTACTTCGCGCTCCTCTCCATCGGCGCCGTCGTGTCCCCCGCCAACCCGGCCCTCACCCCCGCCGAGGTTTCCCGCCTCGTCTCCCTCTCCGGCGCATCCGTCGCCTTCGCCGTCTCGTCCACAGCCACCAAGCTCCCCGCTGGCCTCACCACCGTCGTCCTCCTCGACTCGCCACACTTCCGCTCCCTCTTGATGGATTGCGGCCAAGCCCAAGGACAGGAGCCGCTGCCGGTGGTGGTGGTGCGGCAGTCGGAGACGGCGGCGATCCAGTACTCCTCGGGGACGACGGGGCGGGTGAAGGCGGCGGCGCTGCCTCACCGGAGCTTCATCGCCATGGTGGCAGGGTTCCACGCGCTGCGGGCCAAGGCTCGGGAGGTCAGGACGCTGCTCGGTGCCCCGATGTTCCACTCCATGGGGTTCTTGTTCGTGCTGCAGGGCGTCGCGCTGGGGGCGACGACGGTGGTGGTGACGGACGCGGTGGCGCGGGCCGGGATACGGGGGCTCGTGGAGGCGGCGGAGCGTTGGGCGGTCATGGACATGACGGCCTCGCCGCCGGTGGTGCTGGGGATGACCAAGCAGAGGTGCCGGCTGCCGGCGCTGGAGCGGATAACCTGCGGCGGCGCCCCGCTGCCGGCGCCGGCGATCGAACGGTTCCGCCGGCGATTCCCCCACGTCGATTTGTGCATGGGTTATGGATCAACCGAGGCAGGTGGCATATCAAGGATGATCAGCCAGGAAGAGTGCAACCACATAGGCTCTGCTGGCCGTGTCACTGAGAATGTCGAGGTAAAGATTGTTGACCATGTAACAGGCAAGCCATTGCCTGCCGGGCAGCAAGGGGAGCTTTGGGTGAGAGGGCCTGCCGTCAT-GACAGGTTACGTGGGTGACAACGAGGCCAATGCAACCACCTTTAATTCTGAAGGATGGCTGAAAACTGGTGACCTTTGCTATATTGATCAGGACGGGTTTCTTTTTGTAGTTGACAGGCTAAAGGAACTGATTAAATACAAGGCCTACCAGGTACCACCTGCAGAGCTGGAGCTTGTCCTGCATTCTTTGCCACAAATTGTTGATGCTGCAGTTATGCCGTATCCTCACGAAGAAGCAGGGCAGATACCAGTAGCACTTGTCGTAAAGCAACCAGGAAGCAAGCTTACTGAAGCAGAAGTCATGTACAATGTCGCCAAGCA-GGTAGCTCCATACAAGAAGATCCGGAAAGTGCTGTTTGTTGACTCCATACCCAAATCGCCATCTGGGAAGATCTTGAGAAGGGAATTGGTAAATCATCTGCGGTTGTGTGAATTGTCGAGATTGTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGTCCCCCAAAAAAAAAA]
[+] EMBL AK108656 [AAATAATAATGGCAGCTCCCACCTCCATGGCGAACGCGGATGGCGAGAGCACGCGCACCGGCTACTGCGCCGCGACCAAGTCGTTCCGCAGCCTCCGGCCGCCGGTGCCGCTGCCTCCGCCGGACGTCCCGCTCTCCTTCCCGGAGTTCGCGTTCTCGCTGCTGCCGCGGTCGTCGTCGTCGTCGTCGTCGTCTCTTCTCCCGGCGAACCCGGCGCTCGTCGACGCGGCCACTGGCGAGGCCGTCTCGTTCCAGGCGTTCCTGTCGCGGGTGCGCGCGCTCGCCGGAGCCCTCCGCTCGCGCGTCGGGCTGCGCGGCGGCGACGTCGCGTTCGTGCTCGCGCCCGCAGGGCTCGACGTGCCCGTGCTGTACTTCGCGCTCCTCTCCATCGGCGCCGTCGTGTCCCCCGCCAACCCGGCCCTCACCCCCGCCGAGGTTTCCCGCCTCGTCTCCCTCTCCGGCGCATCCGTCGCCTTCGCCGTCTCGTCCACAGCCACCAAGCTCCCCGCTGGCCTCACCACCGTCGTCCTCCTCGACTCGCCACACTTCCGCTCCCTCTTGATGGATTGCGGCCAAGCCCAAGGACAGGAGCCGCTGCCGGTGGTGGTGGTGCGGCAGTCGGAGACGGCGGCGATCCAGTACTCCTCGGGGACGACGGGGCGGGTGAAGGCGGCGGCGCTGCCTCACCGGAGCTTCATCGCCATGGTGGCAGGGTTCCACGCGCTGCGGGCCAAGGCTCGGGAGGTCAGGACGCTGCTCGGTGCCCCGATGTTCCACTCCATGGGGTTCTTGTTCGTGCTGCAGGGCGTCGCGCTGGGGGCGACGACGGTGGTGGTGACGGACGCGGTGGCGCGGGCCGGGATACGGGGGCTCGTGGAGGCGGCGGAGCGTTGGGCGGTCATGGACATGACGGCCTCGCCGCCGGTGGTGCTGGGGATGACCAAGCAGAGGTGCCGGCTGCCGGCGCTGGAGCGGATAACCTGCGGCGGCGCCCCGCTGCCGGCGCCGGCGATCGAACGGTTCCGCCGGCGATTCCCCCACGTCGATTTGTGCATGGGTTATGGATCAACCGAGGCAGGTGGCATATCAAGGATGATCAGCCAGGAAGAGTGCAACCACATAGGCTCTGCTGGCCGTGTCACTGAGAATGTCGAGGTAAAGATTGTTGACCATGTAACAGGCAAGCCATTGCCTGCCGGGCAGCAAGGGGAGCTTTGGGTGAGAGGGCCTGCCGTCAT GACAGGTTACGTGGGTGACAACGAGGCCAATGCAACCACCTTTAATTCTGAAGGATGGCTGAAAACTGGTGACCTTTGCTATATTGATCAGGACGGGTTTCTTTTTGTAGTTGACAGGCTAAAGGAACTGATTAAATACAAGGCCTACCAGGTACCACCTGCAGAGCTGGAGCTTGTCCTGCATTCTTTGCCACAAATTGTTGATGCTGCAGTTATGCCGTATCCTCACGAAGAAGCAGGGCAGATACCAGTAGCACTTGTCGTAAAGCAACCAGGAAGCAAGCTTACTGAAGCAGAAGTCATGTACAATGTCGCCAAGCA GGTAGCTCCATACAAGAAGATCCGGAAAGTGCTGTTTGTTGACTCCATACCCAAATCGCCATCTGGGAAGATCTTGAGAAGGGAATTGGTAAATCATCTGCGGTTGTGTGAATTGTCGAGATTGTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGT ]
[+] EMBL AU173028 [ CACCTCCATGGCGAACGCGGATGGCGAGAGCACGCGCACCGGCTACTGCGCCGCGACCAAGTCGTTCCGCAGCCTCCGGCCGCCGGTGCCGNTGCCTCCGCCGGACGTCCCGCTCTCCTTCCCGGAGTTCGCGTTCTCGCTGCTGCCGCGGTCGTCGTCGTCGTCGTCGTCGTCTCTTCTCCCGGCGAACCCGGCGCTCGTCGACGCGGCCACTGGCGAGGCCGTCTCGTTCCAGGCGTTCCTGTCGCGGGTGCGCGCGCTCGCCGGAGCCCTCCGCTCGCGCGTCGGGCTGCGCGGCGGCGACGTCGCGTTCGTGCTCGCGCCCGCAGGGCTCGACGTGCCCGTGCTGTACTTCGCGCTCCTCTCCATCGGCGCCGTCGTGTCCCCCGCCAACCCGGCCCTCACCCCCGCCGAGGTTTCCCGCCTCGTCTCCCT ]
[+] EMBL BM038192 [ cCAA GGGAGCTTTGGGTGAGAGGCCCTCCCTTCATGGACAGGTTACGTGGGTGACAACGA GCCCATGCAACCACCTTTGATTCTGAAGGATGGCTGAAAACTGGTGACCTTTGCTATATTGATCAGGACGGGTTTCTTTTTGTAGTTGACAGGCTAAAGGAACTGATTAAATACAAGGCCTACCAGGTACCACCTGCAGAGCTGGAGCTTGTCCTGCATTCTTTGCCACCAATTGTTGATGCTGCAGTTATGCCGTATCCTCACGAAGAAGCAGGGCAGATACCAGTAGCACTTGTCGTAAAGCAACCAGGAAGCAAGCTTACTGAAGCAGAAGTCATGTACAATGTCGCCAAGCACGGTAGCTCCATACCAGAAGATCCGGAAAGTGCTGTTTGTTGACTCCATACCCCAATCGCCATCTGGGAAGATCTTGAGAAGGGAATTGGTAAATCATCTGCGGTTGTGTGAATTGTCGAGATTGTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGTCCCCCAAAAAAAAAA]
consensusID : consensus_6855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence
[GACTCCATACCCAAATCGCCATCCTGGGAAGATCCTTNAGAAGGGAATTGGTANATCCATCTGCGGTTGTGTGAATTGTCGAGATTNTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGTGTCAAAAAGGNAAAAGTAAAAAAGAAAATGTGCTGCAATTGTACCGGAAGAAGAATATTGGATAAACGGAAGGCTCATAACATATGTTTATGAGGGGCTGCACTATACTGTCGAACATGATGCTGGTGTACAAAGAAAAGTAAGTTTGTTGAGATTGTTTAGTGGGATTAGCTACTTGTATAAGAAGCAATAAACAAGTCTGTCTCAAAAAAAAA]
[+] EMBL AU031119 [GACTCCATACCCAAATCGCCATCCTGGGAAGATCCTTNAGAAGGGAATTGGTANATCCATCTGCGGTTGTGTGAATTGTCGAGATTNTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGTGTCAAAAAGGNAAAAGTAAAAAAGAAAATGTGCTGCAATTGTACCGGAAGAAGAATATTGGATAAACGGAAGGCTCATAACATATGTTTATGAGGGGCTGCACTATACTGTCGAACATGATGCTGGTGTACAAAGAAAAGTAAGTTTGTTGAGATTGTTTAGTGGGATTAGCTACTTGTATAAGAAGCAATAAACAAGTCTGTCTCAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6855#0 AAATAATAATGGCAGCTCCCACCTCCATGGCGAACGCGGATGGCGAGAGCACGCGCACCG 60
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 GCTACTGCGCCGCGACCAAGTCGTTCCGCAGCCTCCGGCCGCCGGTGCCGCTGCCTCCGC 120
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 CGGACGTCCCGCTCTCCTTCCCGGAGTTCGCGTTCTCGCTGCTGCCGCGGTCGTCGTCGT 180
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 CGTCGTCGTCGTCTCTTCTCCCGGCGAACCCGGCGCTCGTCGACGCGGCCACTGGCGAGG 240
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 CCGTCTCGTTCCAGGCGTTCCTGTCGCGGGTGCGCGCGCTCGCCGGAGCCCTCCGCTCGC 300
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 GCGTCGGGCTGCGCGGCGGCGACGTCGCGTTCGTGCTCGCGCCCGCAGGGCTCGACGTGC 360
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 CCGTGCTGTACTTCGCGCTCCTCTCCATCGGCGCCGTCGTGTCCCCCGCCAACCCGGCCC 420
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 TCACCCCCGCCGAGGTTTCCCGCCTCGTCTCCCTCTCCGGCGCATCCGTCGCCTTCGCCG 480
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 TCTCGTCCACAGCCACCAAGCTCCCCGCTGGCCTCACCACCGTCGTCCTCCTCGACTCGC 540
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 CACACTTCCGCTCCCTCTTGATGGATTGCGGCCAAGCCCAAGGACAGGAGCCGCTGCCGG 600
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 TGGTGGTGGTGCGGCAGTCGGAGACGGCGGCGATCCAGTACTCCTCGGGGACGACGGGGC 660
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 GGGTGAAGGCGGCGGCGCTGCCTCACCGGAGCTTCATCGCCATGGTGGCAGGGTTCCACG 720
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 CGCTGCGGGCCAAGGCTCGGGAGGTCAGGACGCTGCTCGGTGCCCCGATGTTCCACTCCA 780
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 TGGGGTTCTTGTTCGTGCTGCAGGGCGTCGCGCTGGGGGCGACGACGGTGGTGGTGACGG 840
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 ACGCGGTGGCGCGGGCCGGGATACGGGGGCTCGTGGAGGCGGCGGAGCGTTGGGCGGTCA 900
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 TGGACATGACGGCCTCGCCGCCGGTGGTGCTGGGGATGACCAAGCAGAGGTGCCGGCTGC 960
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 CGGCGCTGGAGCGGATAACCTGCGGCGGCGCCCCGCTGCCGGCGCCGGCGATCGAACGGT 1020
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 TCCGCCGGCGATTCCCCCACGTCGATTTGTGCATGGGTTATGGATCAACCGAGGCAGGTG 1080
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 GCATATCAAGGATGATCAGCCAGGAAGAGTGCAACCACATAGGCTCTGCTGGCCGTGTCA 1140
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 CTGAGAATGTCGAGGTAAAGATTGTTGACCATGTAACAGGCAAGCCATTGCCTGCCGGGC 1200
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 AGCAAGGGGAGCTTTGGGTGAGAGGGCCTGCCGTCATGACAGGTTACGTGGGTGACAACG 1260
consensus_6855#1 ---------GACTCCATACCCAAA---TCGCCATCCTGGGAAGATCCTTNAG----AAGG 44
** * *** ** ** * * * * * * ** *
consensus_6855#0 AGGCCAATGCAACCACCTTTAATTCTGAAGGATGGCTGAAAACTGGTGACCTTTGCTATA 1320
consensus_6855#1 GAATTGGTANATCCATCTGCGGTTGTGT-GAATTGTCGAGA--TTNTGACTGTGCGAGTG 101
* * *** ** ** ** * ** * ** * * **** * *
consensus_6855#0 TTGATCAGGACGGGTTTCTTTTTGTAGTTGACAGGCTAAAGGAACTGATTAAATACAAGG 1380
consensus_6855#1 TTGTACCCTATAGTTCAATTCTTGTGTCAAAAAGGNAAAAGTAAAAAAGAAAATGTGCTG 161
*** * * * * ** **** * *** **** ** * **** *
consensus_6855#0 CCTACCAGGTACCACCTGCAGAGCTGGAGCTTGTCCTGCATTCTTTGCCACAAATTGTTG 1440
consensus_6855#1 CAATT---GTACCGGAAGAAGAATATTGGATAAACGGAAGGCTCATAACATATGTTTATG 218
* ***** * *** * * * * ** * ** **
consensus_6855#0 ATG--CTGCAGTTATGCCGTATCCTCACGAAGAAGCAGGGCAGATACCAGTAGCACTTGT 1498
consensus_6855#1 AGGGGCTGCA-CTATACTGT-CGAACATGATGCTGGTGTACAAAGAAAAGTAA-GTTTGT 275
* * ***** *** * ** ** ** * * * ** * * **** ****
consensus_6855#0 CGTAAAGCAACCAG-GAAGCAAGCTTACTGAAGCAGAAGTCATGTACAATGTCGCCAAGC 1557
consensus_6855#1 TG-AGATTGTTTAGTGGGATTAGCTACTTGTATAAGAAGCAATAAACAAGTCTGTCTCAA 334
* * * ** * **** ** * ***** ** **** * *
consensus_6855#0 AGGTAGCTCCATACAAGAAGATCCGGAAAGTGCTGTTTGTTGACTCCATACCCAAATCGC 1617
consensus_6855#1 AAAAAAA----------------------------------------------------- 341
* *
consensus_6855#0 CATCTGGGAAGATCTTGAGAAGGGAATTGGTAAATCATCTGCGGTTGTGTGAATTGTCGA 1677
consensus_6855#1 ------------------------------------------------------------
consensus_6855#0 GATTGTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGTCCCCCAAAAAAAAAA 1736
consensus_6855#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||