These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 776 fasta sequence [TCTTTTTATTGCTATTCCAAATTCTAGTGCAGCCTACGTATCTTAACTGAACAACACATAGTCAAATAAAACAAAAATATTTACAGTGATATAAAGACATCAACGAATTGACGCATAGCCAATTGCCATTTGATAACACCAAGTTTAGTTTACAAACGTATCCATAACATAATCAGCACAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAGTATAGAGATACAATCAACACTTCATACCAGGTTGGCACGTTGTTTTTTCAGCCTTATCATCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCTCTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTCATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCGCTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGCTCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTTGTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTTCCTTCTCCCTCTTGTCCACCACCACCATAGAGCTGCCGAAAACCTCCGGTTGCGGTGCATCGGCATTCTGCTGTTCCTTCTCCAAACCGCGTGATTCTTCCACTGCCTCAACTTCCTTTTCTTCCACAATCCCTCTCGCTT] [+] EMBL CB683420 [TCTTTTTATTGCTATTCCAAATTCTAGTGCAGCCTACGTATCTTAACTGAACAACACATAGTCAAATAAAACAAAAATATTTACAGTGATATAAAGACATCAACGAATTGACGCATAGCCAATTGCCATTTGATAACACCAAGTTTAGTTTACAAACGTATCCATAACATAATCAGCACAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAGTATAGAGATACAATCAACACTTCATACCAGGTTGGCACGTTGTTTTTTCAGCCTTATCATCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCTCTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTCATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCGCTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGCTCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTTGTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTTCCTTCTCCCTCTTGTCCACCACCACCATAGAGCTGCCGAAAACCTCCGGTTGCGGTGCATCGGCATTCTGCTGTTCCTTCTCCAAACCGCGTGATTCTTCCACTGCCTCAACTTCCTTTTCTTCCACAATCCCTCTCGCTT] [-] EMBL C96948 [ ttttTTGACGCATAGCCAATTGCCATTTGATAACACCAAGTTTAGTTTACAAACGTATCCATAACATAATCAGCACAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAGTATAGAGATACAATCAACACTTCATACCAGGTTGGCACGTTGTTTTTTCAGCCTTATCATCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCTCTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCGCCCTCTCTTCTCTTCATGCTCCCCAAGATCCTCAATCTCANCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCGNTGCC ] consensusID : consensus_6859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 537 fasta sequence [TTTTTTTTTTTTTTTAGCCAATTGCCATTTGATANCACCAAGTTTAGTTTACAAACGTATCCCATAACATAATCCAGCACAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAGTATAGAGATACAATCAACACTTCATACCAGGTTGGCCACGTTGTTTTTTCAGCCTTATCATCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCTCTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTCATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCGCTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGCTCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTTGTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTT] [-] EMBL AU031547 [TTTTTTTTTTTTTTTAGCCAATTGCCATTTGATANCACCAAGTTTAGTTTACAAACGTATCCCATAACATAATCCAGCACAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAGTATAGAGATACAATCAACACTTCATACCAGGTTGGCCACGTTGTTTTTTCAGCCTTATCATCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCTCTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTCATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCGCTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGCTCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTTGTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTT] [-] EMBL C26832 [ cgCATCATCTTCAGCAANACTGAGCCTCTTCCGNAATTCCGCCTTTAAAGCAGAGCTTGAGTNATTATTGCNCCCNNTCTNCNCTTCATGCTCCCCAAGATCCTTAATCTCATCCTACTCAAGATCCTCTTCCTCGGTCGTTGTTCGCTGCCTAGACACCATGGAGTAGTCACTANCCTTGCTTGAGTCGCTTGTCTCATGCTTTGCTCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTTGTCACTTGATNCTTCAATGTNCGAAACGGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6859#0 TCTTTTTATTGCTATTCCAAATTCTAGTGCAGCCTACGTATCTTAACTGAACAACACATA 60 consensus_6859#1 ------------------------------------------------------------ consensus_6859#0 GTCAAATAAAACAAAAATATTTACAGTGATATAAAGACATCAACGAATTGACGCATAGCC 120 consensus_6859#1 -----------------------------------------TTTTTTTTTTTTTTTAGCC 19 ** ***** consensus_6859#0 AATTGCCATTTGATAACACCAAGTTTAGTTTACAAACGTATCC-ATAACATAATC-AGCA 178 consensus_6859#1 AATTGCCATTTGATANCACCAAGTTTAGTTTACAAACGTATCCCATAACATAATCCAGCA 79 *************** *************************** *********** **** consensus_6859#0 CAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAG 238 consensus_6859#1 CAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAG 139 ************************************************************ consensus_6859#0 TATAGAGATACAATCAACACTTCATACCAGGTTGGC-ACGTTGTTTTTTCAGCCTTATCA 297 consensus_6859#1 TATAGAGATACAATCAACACTTCATACCAGGTTGGCCACGTTGTTTTTTCAGCCTTATCA 199 ************************************ *********************** consensus_6859#0 TCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCT 357 consensus_6859#1 TCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCT 259 ************************************************************ consensus_6859#0 CTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTC 417 consensus_6859#1 CTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTC 319 ************************************************************ consensus_6859#0 ATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCG 477 consensus_6859#1 ATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCG 379 ************************************************************ consensus_6859#0 CTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGC 537 consensus_6859#1 CTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGC 439 ************************************************************ consensus_6859#0 TCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTT 597 consensus_6859#1 TCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTT 499 ************************************************************ consensus_6859#0 GTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTTCCTTCTCCCTCTTGTCCACCAC 657 consensus_6859#1 GTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTT---------------------- 537 ************************************** consensus_6859#0 CACCATAGAGCTGCCGAAAACCTCCGGTTGCGGTGCATCGGCATTCTGCTGTTCCTTCTC 717 consensus_6859#1 ------------------------------------------------------------ consensus_6859#0 CAAACCGCGTGATTCTTCCACTGCCTCAACTTCCTTTTCTTCCACAATCCCTCTCGCTT 776 consensus_6859#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||