These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence [CTTTTTTTTTATATAATTTGCGCCGGAACATACCTAAATAAAAGTACAGCATTCAAGTACAAAATGTATGTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACTAATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCGTGTAATACTTTGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGTGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCAAATAAACGAACTACATTTCATTTTTTGTGATTCTAAAAGTGAAATTTAGTTCATTTAGTTGAACTAGTGTGGGTAAAGGAGTATCCACGGGTCAGCCCACACTCATCCCTAGCCAACTAGTGAAGTGTATGTCTAAGTTCCTAATCTTTGTTTACATCGGCGTCAGGCCCAATTCATGAGTAAGAGAGGTTGAAACATCTGTCGGATTGGCTTCAACCTCAGTATACAGTCAGCCTAAGAGGTAGCATGGTTAGAAGTCAACCTTCAAAATTATACAAGCATCTATGTGCACCACCACTAATTTCAGAGCTGATAATTTTGGTCACTTGGACATGCACAATCACACAGGTGGAGGTGGAGGTGGAGGTGGAGTTGATCCTTCGTTATCTTTCTTTCCCGGTAAACACCTTGAGATGTAAGTTTTCAATTCAGTTTGGGGAACCGGTATGAACTTTCCAGAAAAAGCCAGGGGCCAACTCACAAATCCAATACCAACAGAAACAAGCCAAAG] [+] EMBL CB634745 [CTTTTTTTTTATATAATTTGCGCCGGAACATACCTAAATAAAAGTACAGCATTCAAGTACAAAATGTATGTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACTAATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCGTGTAATACTTTGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGTGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCAAATAAACGAACTACATTTCATTTTTTGTGATTCTAAAAGTGAAATTTAGTTCATTTAGTTGAACTAGTGTGGGTAAAGGAGTATCCACGGGTCAGCCCACACTCATCCCTAGCCAACTAGTGAAGTGTATGTCTAAGTTCCTAATCTTTGTTTACATCGGCGTCAGGCCCAATTCATGAGTAAGAGAGGTTGAAACATCTGTCGGATTGGCTTCAACCTCAGTATACAGTCAGCCTAAGAGGTAGCATGGTTAGAAGTCAACCTTCAAAATTATACAAGCATCTATGTGCACCACCACTAATTTCAGAGCTGATAATTTTGGTCACTTGGACATGCACAATCACACAGGTGGAGGTGGAGGTGGAGGTGGAGTTGATCCTTCGTTATCTTTCTTTCCCGGTAAACACCTTGAGATGTAAGTTTTCAATTCAGTTTGGGGAACCGGTATGAACTTTCCAGAAAAAGCCAGGGGCCAACTCACAAATCCAATACCAACAGAAACAAGCCAAAG] consensusID : consensus_6865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [TCCAGACATCTCCGCGTAATACTTTGGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCAAGACTGGCCACAGGCCAACCCCATCAGGTCACTCAATTGCACCCCACTCTCAGTCCCAAATCAAACGCAACTCACCATTTCCATTATTTGTGCATTCCTCAAACAGTGCACACATTTGCAGTTCCATTTCAGTTGCAACTCAGATGTGGGTCACACAGGCAGTCATCCCACGGGGTCAGCCCACCACTCCATCCCTCAGCCCAACTCAGTGCACAGGTTGTCATTGTCCTCACAGTTCCTCAATCTTTTGTTTCACCATCGGCTGTCCAGGCCCCAATATCCATTGCAGTCACAGCAGCAGGCATTGCACCACCATCTGTCGGGCATAGGCTTTCCAACCTCCCAGTCATCACCAGTCCAGCCCTCAACGCAGGTCAGCCATTGGTTACAGCACAGTCCACACCTTTCCACACACATTTCATACCACAGCCATCTCATAGTTAGCACCCAACCACTCACATTTCCAGCAGCTGCATCACATTTAGTGGTCCACTATGGCACCATTGCACCAATCCACCACCAAGGTGGCAGGTTGGCAGGTGGCAAGGTGGCAGTTTGCATCCTATCGCTACATCTTTCCTTTCCCCCTGGAACA] [-] EMBL BI803241 [TCCAGACATCTCCGCGTAATACTTTGGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCAAGACTGGCCACAGGCCAACCCCATCAGGTCACTCAATTGCACCCCACTCTCAGTCCCAAATCAAACGCAACTCACCATTTCCATTATTTGTGCATTCCTCAAACAGTGCACACATTTGCAGTTCCATTTCAGTTGCAACTCAGATGTGGGTCACACAGGCAGTCATCCCACGGGGTCAGCCCACCACTCCATCCCTCAGCCCAACTCAGTGCACAGGTTGTCATTGTCCTCACAGTTCCTCAATCTTTTGTTTCACCATCGGCTGTCCAGGCCCCAATATCCATTGCAGTCACAGCAGCAGGCATTGCACCACCATCTGTCGGGCATAGGCTTTCCAACCTCCCAGTCATCACCAGTCCAGCCCTCAACGCAGGTCAGCCATTGGTTACAGCACAGTCCACACCTTTCCACACACATTTCATACCACAGCCATCTCATAGTTAGCACCCAACCACTCACATTTCCAGCAGCTGCATCACATTTAGTGGTCCACTATGGCACCATTGCACCAATCCACCACCAAGGTGGCAGGTTGGCAGGTGGCAAGGTGGCAGTTTGCATCCTATCGCTACATCTTTCCTTTCCCCCTGGAACA] consensusID : consensus_6865#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [TTTTTTTTTAGACATCTCCGGCGTAATACTTGGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCCAAATCAAACGAACTCCCATTTCCATTTTTGTGATTCTCAAAAGTGCAAATGTCAGTTCATTTAGTTGCAACTCAGTGTGGGTCAACAGGAGTATCCCACGGGTCAGCCCACACTCATCCCTAGCCAACTAGTGCAAGTGTCATGTCCTCACAGTTCCGTCACATCATTGGTCTCACCATCGGCGTCAGGCCCACAATTCCATGCAGTCACAGCAGCAGGCATGCACAACCATCTAGTCG] [-] EMBL BI803319 [TTTTTTTTTAGACATCTCCGGCGTAATACTTGGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCCAAATCAAACGAACTCCCATTTCCATTTTTGTGATTCTCAAAAGTGCAAATGTCAGTTCATTTAGTTGCAACTCAGTGTGGGTCAACAGGAGTATCCCACGGGTCAGCCCACACTCATCCCTAGCCAACTAGTGCAAGTGTCATGTCCTCACAGTTCCGTCACATCATTGGTCTCACCATCGGCGTCAGGCCCACAATTCCATGCAGTCACAGCAGCAGGCATGCACAACCATCTAGTCG] consensusID : consensus_6865#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [TTTTTTTTTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACTAATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCGCGTAATACTTTGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCAAATAAACGAACTACATTTCATTTTTTGGGATTCTAAAAGTGAAATTTAGTTCATTTAGTTGAACTAGTGGGGGTAAAGGAGTATCCACGGGTCAGCCCCCCCTTGTCTCGTCCTCT] [+] EMBL CA761709 [TTTTTTTTTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACTAATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCGCGTAATACTTTGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCAAATAAACGAACTACATTTCATTTTTTGGGATTCTAAAAGTGAAATTTAGTTCATTTAGTTGAACTAGTGGGGGTAAAGGAGTATCCACGGGTCAGCCCCCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6865#0 CTTTTTTTTTATATAATTTGCGCCGGAACATACCTAAATAAAAGTACAGCATTCAAGTAC 60 consensus_6865#3 ------------------------------------------------------------ consensus_6865#1 ------------------------------------------------------------ consensus_6865#2 ------------------------------------------------------------ consensus_6865#0 AAAATGTATGTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACT 120 consensus_6865#3 --TTTTTTTTTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACT 58 consensus_6865#1 ------------------------------------------------------------ consensus_6865#2 ------------------------------------------------------------ consensus_6865#0 AATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCG-TGTAATACTTTG-AA 178 consensus_6865#3 AATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCG-CGTAATACTTTG-AA 116 consensus_6865#1 ------------------------------TCCAGACATCTCCG-CGTAATACTTTGGAA 29 consensus_6865#2 ------------------------TTTTTTTTTAGACATCTCCGGCGTAATACTT-GGAA 35 * *********** ********* * ** consensus_6865#0 AGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGTGGCCAAGACTGGCCACAGGCC 238 consensus_6865#3 AGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCC 176 consensus_6865#1 AGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGC-AAGACTGGCCACAGGCC 88 consensus_6865#2 AGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCC 95 ************************************** *** ***************** consensus_6865#0 AACCC--ATAGGT-ACT-AATTG--ACCCACTCT-AGTCCAAA--TAAACG-AACTA--C 286 consensus_6865#3 AACCC--ATAGGT-ACT-AATTG--ACCCACTCT-AGTCCAAA--TAAACG-AACTA--C 224 consensus_6865#1 AACCCCATCAGGTCACTCAATTGCACCCCACTCTCAGTCCCAAATCAAACGCAACTCACC 148 consensus_6865#2 AACCC--ATAGGT-ACT-AATTG--ACCCACTCT-AGTCCCAAATCAAACG-AACTC-CC 146 ***** **** *** ***** ******** ***** ** ***** **** * consensus_6865#0 ATTTC-ATTTTTTGTG--ATTCTAAAA--GTGAA---ATTT--AGTTC--ATTTAGTTG- 333 consensus_6865#3 ATTTC-ATTTTTTGGG--ATTCTAAAA--GTGAA---ATTT--AGTTC--ATTTAGTTG- 271 consensus_6865#1 ATTTCCATTATTTGTGCATTCCTCAAACAGTGCACACATTTGCAGTTCCATTTCAGTTGC 208 consensus_6865#2 ATTTCCATT-TTTGTG--ATTCTCAAA-AGTGCAAATGT---CAGTTC--ATTTAGTTGC 197 ***** *** **** * * ** *** *** * * ***** ** ***** consensus_6865#0 AACT-AG-TGTGGGTAA---AGG-AGT--ATCCACGGG-TCAGCCCAC-ACTC-ATCCCT 382 consensus_6865#3 AACT-AG-TGGGGGTAA---AGG-AGT--ATCCACGGG-TCAGCCCCC-CCTT-GTCTC- 319 consensus_6865#1 AACTCAGATGTGGGTCACACAGGCAGTCATCCCACGGGGTCAGCCCACCACTCCATCCCT 268 consensus_6865#2 AACTCAG-TGTGGGTCA-ACAGG-AGT-ATCCCACGGG-TCAGCCCAC-ACTC-ATCCCT 250 **** ** ** **** * *** *** ******* ******* * ** ** * consensus_6865#0 AG--CCAACT-AGTGAAGTGTATGTCTAAGTTCCTAATCTTTGTTTACATCGGCGTCAGG 439 consensus_6865#3 -G--TCCTCT-------------------------------------------------- 326 consensus_6865#1 CAGCCCAACTCAGTGCACAGGTTGTCATTGTCCTCACAGTTCC-TCA-ATC---TTTTGT 323 consensus_6865#2 AG--CCAACT-AGTGCA---AGTGTCAT-GTCCTCACAGTTCCGTCACATC---ATTGGT 300 * ** consensus_6865#0 CCCAATTCATGAGTAAGAGAGGTTGAAACATCTGTCGGATTGGCTTCAACCT-CAGTATA 498 consensus_6865#3 ------------------------------------------------------------ consensus_6865#1 TTCA--CCATCGGCTGTCCAGGCCCCAATATCCATTGCAGTCACAGCAGCAGGCATTGCA 381 consensus_6865#2 CTCA--CCATCGGC-GTCAGGCCCACAAT-TCCAT-GCAGTCACAGCAGCAGGCAT-GCA 354 consensus_6865#0 CAGTCAGCCTAAGAGGTAGCATGGTTAGAAGTCAACCTTCAAAATTA-TACAAGCATCTA 557 consensus_6865#3 ------------------------------------------------------------ consensus_6865#1 CCACCATCT-GTCGGGCATAGGCTTTCCAACCTCCCAGTCATCACCAGTCCAGCCCTCAA 440 consensus_6865#2 CAACCATCTAGTCG---------------------------------------------- 368 consensus_6865#0 TGTGCACCA-CCACTAATTTCAGAGCTGATAATTTTGGTCACTTGGACATGCACAATCAC 616 consensus_6865#3 ------------------------------------------------------------ consensus_6865#1 CGCAGGTCAGCCATTGGTTACAGCACAGTCCACACCTTTC-CACACACATTTCATACCAC 499 consensus_6865#2 ------------------------------------------------------------ consensus_6865#0 ACAGGTGGAGGTGGAGGTGGAGGTGGAGTTGATCCTTCGTTATCTTTCTTTC--CCGGTA 674 consensus_6865#3 ------------------------------------------------------------ consensus_6865#1 AGCCATCTCATAGTTAGCACCCAACCACTCACATTTCCAGCAGCTGCATCACATTTAGTG 559 consensus_6865#2 ------------------------------------------------------------ consensus_6865#0 AACACCTTGAGATGTAAGTTTTCAATTCAGTTTGGGGAACCGGTATGAACTTTCCAGAAA 734 consensus_6865#3 ------------------------------------------------------------ consensus_6865#1 GTCCACTATGGCACCATTGCACCAATCCACCACCAAGGTGGCAGGTTGGCAGGTGGCAAG 619 consensus_6865#2 ------------------------------------------------------------ consensus_6865#0 AAGCCAGGGGCCAACTCACAAATCCAATACCAACAGAAACAAGCCAAAG 783 consensus_6865#3 ------------------------------------------------- consensus_6865#1 GTGGCAGTTTGCATCCTATCGCTACATCTTTCCTTTCCCCCTGGAACA- 667 consensus_6865#2 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||