cluster # 6869

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Oryza sativa
cluster # 6869 cluster # 6869 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6869#0 length = 851 sequences # 3

consensus_6869#1 length = 422 sequences # 1

consensusID : consensus_6869#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 851
fasta sequence

                              [GGGAAGTGGTTTTATCTTGACCATTACGGTATTGAGCAAGGACCTTCTAAGCTTGCTGACTTGAAGAAGCTGGTGGAAGATGGATATCTTCTTTCTGATCATCTAATAAAGCATGCTGACAGCAATCGGTGGGTGACTGTTGAGAATGCAGCTTCACCACTGGTTCCATCCGAATTCCCCTCAGTATATTCAGATGTCTCAACACAGCTGGTTAGCCCG-CCAGAAGCCCCAGGTAATTTACTTGATGAAGCTCGAGAGGAGGCATCTGGTACTGACCA-TGAACAAATGAAGGAAGCTTCTGCAGAAGAGCAGGAAGATTTCTACATTGATGACAGGGTTGATGCATTGATGGATGGATCTATCATGGTGGATGGTCAGGAGCTTGAGATTCTTGGAGAGCTTCTAAATGCACATTTTGANCCAGTCAACTGGGGAAAGCGAAGATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGTTGATGGAACCAAAAGAAGCACTGAATTTCCCAGATAGCAGGACTGCACACATTTATGGCGTTGTTCCTGCTGAGAGGGATACCTATCAGCCTCATATTGAGTCTAGTGAATGGTATTCTGGGAGATGGTCATGTAAAGNTGNTGACTGNAANCGAATTGCTGATTTCAGCCAAGTAAGCCTTCACAGGNAGAAGCTTGTTCTNCAATGAANGCTATCCTCTTTGTCAAATNCCAAAAGGGAATCATCTTGACTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGTGTTTTCATCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATATGATACATGGACAAAAAAAAC]

[+] EMBL AU184104             [GGGAAGTGGTTTTATCTTGACCATTACGGTATTGAGCAAGGACCTTCTAAGCTTGCTGACTTGAAGAAGCTGGTGGAAGATGGATATCTTCTTTCTGATCATCTAATAAAGCATGCTGACAGCAATCGGTGGGTGACTGTTGAGAATGCAGCTTCACCACTGGTTCCATCCGAATTCCCCTCAGTATATTCAGATGTCTCAACACAGCTGGTTAGCCCG CCAGAAGCCCCAGGTAATTTACTTGATGAAGCTCGAGAGGAGGCATCTGGTACTGACCA TGAACAAATGAAGGAAGCTTCTGCAGAAGAGCAGGAAGATTTCTACATTGATGACAGGGTTGATGCATTGATGGATGGATCTATCATGGTGGATGGTCAGGAGCTTGAGATTCTTGGAGAGCTTCTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSR09022A            [GGGAAGTGGTTTTATCTTGACCATTACGGTATTGAGCAAGGACCTTCTAAGCTTGCTGACTTGAAGAAGCTGGTGGAAGATGGATATCTTCTTTCTGATCATCTAATAAAGCATGCTGACAGCAATCGGTGGGTGACTGTTGAGAATGCAGCTTCACCACTGGTTCCATCCGAATTCCCCTCAGTATATTCAGATGTCTCAACACAGCTGGTTAGCCCGNCCAGAAGCCCCAGGTAATTTACTTGATGAAGCTCGAGAGGAGGCATCTGGTACTGACCATTGNACAAATGAAGGCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU031726             [                                                                                                                                                                                                                                                                                                                        AGGAAGATTTCTACATTGTTNCCAGGGTTGATNCATTGATGGATGGATCTATCATGGTGGATGNTCAGGAGCTTGAGATTCTTGGAGAGCTTCTAAATGCACATTTTGANCCAGTCAACTGGGGAAAGCGAAGATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGTTGATGGAACCAAAAGAAGCACTGAATTTCCCAGATAGCAGGACTGCACACATTTATGGCGTTGTTCCTGCTGAGAGGGATACCTATCAGCCTCATATTGAGTCTAGTGAATGGTATTCTGGGAGATGGTCATGTAAAGNTGNTGACTGNAANCGAATTGCTGATTTCAGCCAAGTAAGCCTTCACAGGNAGAAGCTTGTTCTNCAATGAANGCTATCCTCTTTGTCAAATNCCAAAAGGGAATCATCTTGACTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGTGTTTTCATCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATATGATACATGGACAAAAAAAAC]




>consensus_6869#0
GGGAAGTGGTTTTATCTTGACCATTACGGTATTGAGCAAGGACCTTCTAAGCTTGCTGAC
TTGAAGAAGCTGGTGGAAGATGGATATCTTCTTTCTGATCATCTAATAAAGCATGCTGAC
AGCAATCGGTGGGTGACTGTTGAGAATGCAGCTTCACCACTGGTTCCATCCGAATTCCCC
TCAGTATATTCAGATGTCTCAACACAGCTGGTTAGCCCGCCAGAAGCCCCAGGTAATTTA
CTTGATGAAGCTCGAGAGGAGGCATCTGGTACTGACCATGAACAAATGAAGGAAGCTTCT
GCAGAAGAGCAGGAAGATTTCTACATTGATGACAGGGTTGATGCATTGATGGATGGATCT
ATCATGGTGGATGGTCAGGAGCTTGAGATTCTTGGAGAGCTTCTAAATGCACATTTTGAN
CCAGTCAACTGGGGAAAGCGAAGATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGTTGA
TGGAACCAAAAGAAGCACTGAATTTCCCAGATAGCAGGACTGCACACATTTATGGCGTTG
TTCCTGCTGAGAGGGATACCTATCAGCCTCATATTGAGTCTAGTGAATGGTATTCTGGGA
GATGGTCATGTAAAGNTGNTGACTGNAANCGAATTGCTGATTTCAGCCAAGTAAGCCTTC
ACAGGNAGAAGCTTGTTCTNCAATGAANGCTATCCTCTTTGTCAAATNCCAAAAGGGAAT
CATCTTGACTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGT
GTTTTCATCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATATGATACATGG
ACAAAAAAAAC

consensusID : consensus_6869#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [GATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGATGATGGAACCAAAAGAAGCCCTGAATTTCCAGATAGCAGGNCTGCNCACATTTATGGNGTTGTTCCTGCTGANAGGGATACCTATCAGCCTCATATTGAGTTTAGTGAATGGTATTTTGGGAGATGGTCATGCAAAGGTGGTGACTGGAAGCGAAATGATGATTTCAGCCAAGATAAGCCTTACAGGAANAAGCTTGTTTTCAATGAAGGNTATCCTNTTTGTCAAATGCCAAAAGGGAATCNTNTTGANTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGTGTTTTCCTCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATNTGATACATGGGCNAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU184105             [GATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGATGATGGAACCAAAAGAAGCCCTGAATTTCCAGATAGCAGGNCTGCNCACATTTATGGNGTTGTTCCTGCTGANAGGGATACCTATCAGCCTCATATTGAGTTTAGTGAATGGTATTTTGGGAGATGGTCATGCAAAGGTGGTGACTGGAAGCGAAATGATGATTTCAGCCAAGATAAGCCTTACAGGAANAAGCTTGTTTTCAATGAAGGNTATCCTNTTTGTCAAATGCCAAAAGGGAATCNTNTTGANTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGTGTTTTCCTCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATNTGATACATGGGCNAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6869#1
GATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGATGATGGAACCAAAAGAAGCCCTGAA
TTTCCAGATAGCAGGNCTGCNCACATTTATGGNGTTGTTCCTGCTGANAGGGATACCTAT
CAGCCTCATATTGAGTTTAGTGAATGGTATTTTGGGAGATGGTCATGCAAAGGTGGTGAC
TGGAAGCGAAATGATGATTTCAGCCAAGATAAGCCTTACAGGAANAAGCTTGTTTTCAAT
GAAGGNTATCCTNTTTGTCAAATGCCAAAAGGGAATCNTNTTGANTATATAGGATACAGG
AATTGTTTTGATTAACTGTAAACAACATGTAATTGTGTTTTCCTCCCCTCCCTTTTTTTT
GAGTTAGCCAAAGATGAATGAACATNTGATACATGGGCNAAAAAAAAAAAAAAAAAAAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6869#0      GGGAAGTGGTTTTATCTTGACCATTACGGTATTGAGCAAGGACCTTCTAAGCTTGCTGAC 60
consensus_6869#1      ------------------------------------------------------------
                                                                                  

consensus_6869#0      TTGAAGAAGCTGGTGGAAGATGGATATCTTCTTTCTGATCATCTAATAAAGCATGCTGAC 120
consensus_6869#1      ------------------------------------------------------------
                                                                                  

consensus_6869#0      AGCAATCGGTGGGTGACTGTTGAGAATGCAGCTTCACCACTGGTTCCATCCGAATTCCCC 180
consensus_6869#1      ------------------------------------------------------------
                                                                                  

consensus_6869#0      TCAGTATATTCAGATGTCTCAACACAGCTGGTTAGCCCGCCAGAAGCCCCAGGTAATTTA 240
consensus_6869#1      ------------------------------------------------------------
                                                                                  

consensus_6869#0      CTTGATGAAGCTCGAGAGGAGGCATCTGGTACTGACCATGAACAAATGAAGGAAGCTTCT 300
consensus_6869#1      ------------------------------------------------------------
                                                                                  

consensus_6869#0      GCAGAAGAGCAGGAAGATTTCTACATTGATGACAGGGTTGATGCATTGATGGATGGATCT 360
consensus_6869#1      ------------------------------------------------------------
                                                                                  

consensus_6869#0      ATCATGGTGGATGGTCAGGAGCTTGAGATTCTTGGAGAGCTTCTAAATGCACATTTTGAN 420
consensus_6869#1      ------------------------------------------------------------
                                                                                  

consensus_6869#0      CCAGTCAACTGGGGAAAGCGAAGATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGTTGA 480
consensus_6869#1      ----------------------GATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGATGA 38
                                            ********************************** ***

consensus_6869#0      TGGAACCAAAAGAAGCACTGAATTTCCCAGATAGCAGGACTGCACACATTTATGGCGTTG 540
consensus_6869#1      TGGAACCAAAAGAAGCCCTGAATTTCC-AGATAGCAGGNCTGCNCACATTTATGGNGTTG 97
                      **************** ********** ********** **** *********** ****

consensus_6869#0      TTCCTGCTGAGAGGGATACCTATCAGCCTCATATTGAGTCTAGTGAATGGTATTCTGGGA 600
consensus_6869#1      TTCCTGCTGANAGGGATACCTATCAGCCTCATATTGAGTTTAGTGAATGGTATTTTGGGA 157
                      ********** **************************** ************** *****

consensus_6869#0      GATGGTCATGTAAAGNTGNTGACTGNAANCGAATTGCTGATTTCAGCCAAGTAAGCCTTC 660
consensus_6869#1      GATGGTCATGCAAAGGTGGTGACTGGAAGCGAAATGATGATTTCAGCCAAGATAAGCCTT 217
                      ********** **** ** ****** ** **** ** **************  *  * * 

consensus_6869#0      ACAGGNAGAAGCTTGTTCTNCAATGAANGCTATCCTCTTTGTCAAATNCCAAAAGGGAAT 720
consensus_6869#1      ACAGGAANAAGCTTGTT-TTCAATGAAGGNTATCCTNTTTGTCAAATGCCAAAAGGGAAT 276
                      ***** * ********* * ******* * ****** ********** ************

consensus_6869#0      CATCTTGACTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGT 780
consensus_6869#1      CNTNTTGANTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGT 336
                      * * **** ***************************************************

consensus_6869#0      GTTTTCATCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATATGATACATGG 840
consensus_6869#1      GTTTTCCTCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATNTGATACATGG 396
                      ****** ****************************************** **********

consensus_6869#0      ACAAAAAAAAC--------------- 851
consensus_6869#1      GCNAAAAAAAAAAAAAAAAAAAAAAA 422
                       * *******