These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 851 fasta sequence [GGGAAGTGGTTTTATCTTGACCATTACGGTATTGAGCAAGGACCTTCTAAGCTTGCTGACTTGAAGAAGCTGGTGGAAGATGGATATCTTCTTTCTGATCATCTAATAAAGCATGCTGACAGCAATCGGTGGGTGACTGTTGAGAATGCAGCTTCACCACTGGTTCCATCCGAATTCCCCTCAGTATATTCAGATGTCTCAACACAGCTGGTTAGCCCG-CCAGAAGCCCCAGGTAATTTACTTGATGAAGCTCGAGAGGAGGCATCTGGTACTGACCA-TGAACAAATGAAGGAAGCTTCTGCAGAAGAGCAGGAAGATTTCTACATTGATGACAGGGTTGATGCATTGATGGATGGATCTATCATGGTGGATGGTCAGGAGCTTGAGATTCTTGGAGAGCTTCTAAATGCACATTTTGANCCAGTCAACTGGGGAAAGCGAAGATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGTTGATGGAACCAAAAGAAGCACTGAATTTCCCAGATAGCAGGACTGCACACATTTATGGCGTTGTTCCTGCTGAGAGGGATACCTATCAGCCTCATATTGAGTCTAGTGAATGGTATTCTGGGAGATGGTCATGTAAAGNTGNTGACTGNAANCGAATTGCTGATTTCAGCCAAGTAAGCCTTCACAGGNAGAAGCTTGTTCTNCAATGAANGCTATCCTCTTTGTCAAATNCCAAAAGGGAATCATCTTGACTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGTGTTTTCATCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATATGATACATGGACAAAAAAAAC] [+] EMBL AU184104 [GGGAAGTGGTTTTATCTTGACCATTACGGTATTGAGCAAGGACCTTCTAAGCTTGCTGACTTGAAGAAGCTGGTGGAAGATGGATATCTTCTTTCTGATCATCTAATAAAGCATGCTGACAGCAATCGGTGGGTGACTGTTGAGAATGCAGCTTCACCACTGGTTCCATCCGAATTCCCCTCAGTATATTCAGATGTCTCAACACAGCTGGTTAGCCCG CCAGAAGCCCCAGGTAATTTACTTGATGAAGCTCGAGAGGAGGCATCTGGTACTGACCA TGAACAAATGAAGGAAGCTTCTGCAGAAGAGCAGGAAGATTTCTACATTGATGACAGGGTTGATGCATTGATGGATGGATCTATCATGGTGGATGGTCAGGAGCTTGAGATTCTTGGAGAGCTTCTAAA ] [+] EMBL OSR09022A [GGGAAGTGGTTTTATCTTGACCATTACGGTATTGAGCAAGGACCTTCTAAGCTTGCTGACTTGAAGAAGCTGGTGGAAGATGGATATCTTCTTTCTGATCATCTAATAAAGCATGCTGACAGCAATCGGTGGGTGACTGTTGAGAATGCAGCTTCACCACTGGTTCCATCCGAATTCCCCTCAGTATATTCAGATGTCTCAACACAGCTGGTTAGCCCGNCCAGAAGCCCCAGGTAATTTACTTGATGAAGCTCGAGAGGAGGCATCTGGTACTGACCATTGNACAAATGAAGGCAGC ] [+] EMBL AU031726 [ AGGAAGATTTCTACATTGTTNCCAGGGTTGATNCATTGATGGATGGATCTATCATGGTGGATGNTCAGGAGCTTGAGATTCTTGGAGAGCTTCTAAATGCACATTTTGANCCAGTCAACTGGGGAAAGCGAAGATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGTTGATGGAACCAAAAGAAGCACTGAATTTCCCAGATAGCAGGACTGCACACATTTATGGCGTTGTTCCTGCTGAGAGGGATACCTATCAGCCTCATATTGAGTCTAGTGAATGGTATTCTGGGAGATGGTCATGTAAAGNTGNTGACTGNAANCGAATTGCTGATTTCAGCCAAGTAAGCCTTCACAGGNAGAAGCTTGTTCTNCAATGAANGCTATCCTCTTTGTCAAATNCCAAAAGGGAATCATCTTGACTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGTGTTTTCATCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATATGATACATGGACAAAAAAAAC] consensusID : consensus_6869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [GATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGATGATGGAACCAAAAGAAGCCCTGAATTTCCAGATAGCAGGNCTGCNCACATTTATGGNGTTGTTCCTGCTGANAGGGATACCTATCAGCCTCATATTGAGTTTAGTGAATGGTATTTTGGGAGATGGTCATGCAAAGGTGGTGACTGGAAGCGAAATGATGATTTCAGCCAAGATAAGCCTTACAGGAANAAGCTTGTTTTCAATGAAGGNTATCCTNTTTGTCAAATGCCAAAAGGGAATCNTNTTGANTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGTGTTTTCCTCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATNTGATACATGGGCNAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU184105 [GATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGATGATGGAACCAAAAGAAGCCCTGAATTTCCAGATAGCAGGNCTGCNCACATTTATGGNGTTGTTCCTGCTGANAGGGATACCTATCAGCCTCATATTGAGTTTAGTGAATGGTATTTTGGGAGATGGTCATGCAAAGGTGGTGACTGGAAGCGAAATGATGATTTCAGCCAAGATAAGCCTTACAGGAANAAGCTTGTTTTCAATGAAGGNTATCCTNTTTGTCAAATGCCAAAAGGGAATCNTNTTGANTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGTGTTTTCCTCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATNTGATACATGGGCNAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6869#0 GGGAAGTGGTTTTATCTTGACCATTACGGTATTGAGCAAGGACCTTCTAAGCTTGCTGAC 60 consensus_6869#1 ------------------------------------------------------------ consensus_6869#0 TTGAAGAAGCTGGTGGAAGATGGATATCTTCTTTCTGATCATCTAATAAAGCATGCTGAC 120 consensus_6869#1 ------------------------------------------------------------ consensus_6869#0 AGCAATCGGTGGGTGACTGTTGAGAATGCAGCTTCACCACTGGTTCCATCCGAATTCCCC 180 consensus_6869#1 ------------------------------------------------------------ consensus_6869#0 TCAGTATATTCAGATGTCTCAACACAGCTGGTTAGCCCGCCAGAAGCCCCAGGTAATTTA 240 consensus_6869#1 ------------------------------------------------------------ consensus_6869#0 CTTGATGAAGCTCGAGAGGAGGCATCTGGTACTGACCATGAACAAATGAAGGAAGCTTCT 300 consensus_6869#1 ------------------------------------------------------------ consensus_6869#0 GCAGAAGAGCAGGAAGATTTCTACATTGATGACAGGGTTGATGCATTGATGGATGGATCT 360 consensus_6869#1 ------------------------------------------------------------ consensus_6869#0 ATCATGGTGGATGGTCAGGAGCTTGAGATTCTTGGAGAGCTTCTAAATGCACATTTTGAN 420 consensus_6869#1 ------------------------------------------------------------ consensus_6869#0 CCAGTCAACTGGGGAAAGCGAAGATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGTTGA 480 consensus_6869#1 ----------------------GATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGATGA 38 ********************************** *** consensus_6869#0 TGGAACCAAAAGAAGCACTGAATTTCCCAGATAGCAGGACTGCACACATTTATGGCGTTG 540 consensus_6869#1 TGGAACCAAAAGAAGCCCTGAATTTCC-AGATAGCAGGNCTGCNCACATTTATGGNGTTG 97 **************** ********** ********** **** *********** **** consensus_6869#0 TTCCTGCTGAGAGGGATACCTATCAGCCTCATATTGAGTCTAGTGAATGGTATTCTGGGA 600 consensus_6869#1 TTCCTGCTGANAGGGATACCTATCAGCCTCATATTGAGTTTAGTGAATGGTATTTTGGGA 157 ********** **************************** ************** ***** consensus_6869#0 GATGGTCATGTAAAGNTGNTGACTGNAANCGAATTGCTGATTTCAGCCAAGTAAGCCTTC 660 consensus_6869#1 GATGGTCATGCAAAGGTGGTGACTGGAAGCGAAATGATGATTTCAGCCAAGATAAGCCTT 217 ********** **** ** ****** ** **** ** ************** * * * consensus_6869#0 ACAGGNAGAAGCTTGTTCTNCAATGAANGCTATCCTCTTTGTCAAATNCCAAAAGGGAAT 720 consensus_6869#1 ACAGGAANAAGCTTGTT-TTCAATGAAGGNTATCCTNTTTGTCAAATGCCAAAAGGGAAT 276 ***** * ********* * ******* * ****** ********** ************ consensus_6869#0 CATCTTGACTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGT 780 consensus_6869#1 CNTNTTGANTATATAGGATACAGGAATTGTTTTGATTAACTGTAAACAACATGTAATTGT 336 * * **** *************************************************** consensus_6869#0 GTTTTCATCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATATGATACATGG 840 consensus_6869#1 GTTTTCCTCCCCTCCCTTTTTTTTGAGTTAGCCAAAGATGAATGAACATNTGATACATGG 396 ****** ****************************************** ********** consensus_6869#0 ACAAAAAAAAC--------------- 851 consensus_6869#1 GCNAAAAAAAAAAAAAAAAAAAAAAA 422 * ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||