These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1349 fasta sequence [CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATTTCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGCTATTTGACATGGCTTCTATTCGTACACCATTAGTAAAATTACGGCAGGTGCGCAATGATGTAAAGTTCTACCCTACACAGGAAATGGGAAATTCATACTTTGATCATTACCCAGATCTCGTTGACCAAGTTATGCACACTAGCTTTCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTCTTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAAGACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTCAAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTCATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGATCGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGAGTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAGCAATAAAGCAGTGGTGTTATTTCAAAAAAA] [+] EMBL AK069820 [CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATTTCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGCTATTTGACATGGCTTCTATTCGTACACCATTAGTAAAATTACGGCAGGTGCGCAATGATGTAAAGTTCTACCCTACACAGGAAATGGGAAATTCATACTTTGATCATTACCCAGATCTCGTTGACCAAGTTATGCACACTAGCTTTCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTCTTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAAGACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTCAAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTCATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGATCGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGAGTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAGCAATAAAGCAGTG ] [+] EMBL OSR27831A [ CTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATTTCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGCTATTTGACATGGCTTCTATTCGTAC ] [+] EMBL AU031947 [ AAGTTATGCACACTAGCTTNCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTCTTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAAGACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTCAAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTCATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGATCGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGAGTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAGCAATAAAGCAGTGGTGTTATTTCAAAAAAA] consensusID : consensus_6875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 898 fasta sequence [CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCAGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTGTTTCTTTGAATTGAGCAGCGTATGCACGTTTTCAGTCCAGAAATAGTTCTCTGTTTTTCGCCTAATAGAATATACGCAAAAGAAGATGATAGTAGTCTTCGATATTTCAGTACGATTCAACAAAAGGCCTGTTGATGGACATGTATGAATAAGCTGATACTGTATTGTACCAACCAGAACACTA] [+] EMBL AK100828 [CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCAGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTGTTTCTTTGAATTGAGCAGCGTATGCACGTTTTCAGTCCAGAAATAGTTCTCTGTTTTTCGCCTAATAGAATATACGCAAAAGAAGATGATAGTAGTCTTCGATATTTCAGTACGATTCAACAAAAGGCCTGTTGATGGACATGTATGAATAAGCTGATACTGTATTGTACCAACCAGAACACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6875#0 CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGT 60 consensus_6875#1 CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGT 60 ************************************************************ consensus_6875#0 TCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCC 120 consensus_6875#1 TCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCC 120 ************************************************************ consensus_6875#0 TCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCT 180 consensus_6875#1 TCAGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCT 180 ** ********************************************************* consensus_6875#0 CCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGT 240 consensus_6875#1 CCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGT 240 ************************************************************ consensus_6875#0 GCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGT 300 consensus_6875#1 GCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGT 300 ************************************************************ consensus_6875#0 CGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACA 360 consensus_6875#1 CGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACA 360 ************************************************************ consensus_6875#0 TCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGC 420 consensus_6875#1 TCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGC 420 ************************************************************ consensus_6875#0 TCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCG 480 consensus_6875#1 TCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCG 480 ************************************************************ consensus_6875#0 AGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTC 540 consensus_6875#1 AGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTC 540 ************************************************************ consensus_6875#0 TTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAG 600 consensus_6875#1 TTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAG 600 ************************************************************ consensus_6875#0 ATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCC 660 consensus_6875#1 ATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCC 660 ************************************************************ consensus_6875#0 CCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATT 720 consensus_6875#1 CCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTGTTTCTT 720 ****** * * * ** ** ** * * * * ** * * * * ** consensus_6875#0 TCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGC 780 consensus_6875#1 TGAA----------TTGAGCAGCGTATGCACGTT-TTCAGTCCAGAA----ATAGTTCTC 765 * ** *** * *** ** **** * ** *** * * consensus_6875#0 TATTTGACATGGCTTCTATTCGTACACCATTAGTAAAATTACGGCAGGTGCGCAATGATG 840 consensus_6875#1 TGTTTT---TCGCCTAATAGAATATACGCAAAAGAAGATGATAGTAG-TCTTCGATATTT 821 * *** * ** * ** ** * ** ** * * ** * * ** * consensus_6875#0 TAAAGTTCTACCCTACACAGGAAATGG-GAAATTCATACTTTGATCATTACCCAGATCTC 899 consensus_6875#1 CA--GTACGATTCAACAAAAGGCCTGTTGATGGACATGTATGAATAA--GCTGATACTGT 877 * ** * * * *** * * ** ** *** * ** * * * * consensus_6875#0 GTTGACCAAGTTATGCACACTAGCTTTCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTC 959 consensus_6875#1 ATTGTACCAACCA-GAACACTA-------------------------------------- 898 *** * * * * ****** consensus_6875#0 TTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAA 1019 consensus_6875#1 ------------------------------------------------------------ consensus_6875#0 GACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTC 1079 consensus_6875#1 ------------------------------------------------------------ consensus_6875#0 AAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTC 1139 consensus_6875#1 ------------------------------------------------------------ consensus_6875#0 ATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGAT 1199 consensus_6875#1 ------------------------------------------------------------ consensus_6875#0 CGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGA 1259 consensus_6875#1 ------------------------------------------------------------ consensus_6875#0 GTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAG 1319 consensus_6875#1 ------------------------------------------------------------ consensus_6875#0 CAATAAAGCAGTGGTGTTATTTCAAAAAAA 1349 consensus_6875#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||