Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6875 cluster # 6875       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6875#0 length = 1349 sequences # 3  
consensus_6875#1 length = 898 sequences # 1  

consensusID : consensus_6875#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1349
fasta sequence
                              [CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATTTCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGCTATTTGACATGGCTTCTATTCGTACACCATTAGTAAAATTACGGCAGGTGCGCAATGATGTAAAGTTCTACCCTACACAGGAAATGGGAAATTCATACTTTGATCATTACCCAGATCTCGTTGACCAAGTTATGCACACTAGCTTTCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTCTTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAAGACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTCAAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTCATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGATCGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGAGTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAGCAATAAAGCAGTGGTGTTATTTCAAAAAAA]

[+] EMBL AK069820             [CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATTTCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGCTATTTGACATGGCTTCTATTCGTACACCATTAGTAAAATTACGGCAGGTGCGCAATGATGTAAAGTTCTACCCTACACAGGAAATGGGAAATTCATACTTTGATCATTACCCAGATCTCGTTGACCAAGTTATGCACACTAGCTTTCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTCTTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAAGACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTCAAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTCATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGATCGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGAGTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAGCAATAAAGCAGTG                 ]
[+] EMBL OSR27831A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATTTCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGCTATTTGACATGGCTTCTATTCGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU031947             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGTTATGCACACTAGCTTNCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTCTTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAAGACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTCAAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTCATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGATCGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGAGTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAGCAATAAAGCAGTGGTGTTATTTCAAAAAAA]


>consensus_6875#0 CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGT TCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCC TCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCT CCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGT GCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGT CGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACA TCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGC TCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCG AGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTC TTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAG ATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCC CCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATT TCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGC TATTTGACATGGCTTCTATTCGTACACCATTAGTAAAATTACGGCAGGTGCGCAATGATG TAAAGTTCTACCCTACACAGGAAATGGGAAATTCATACTTTGATCATTACCCAGATCTCG TTGACCAAGTTATGCACACTAGCTTTCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTCT TCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAAG ACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTCA AGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTCA TCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGATC GAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGAG TTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAGC AATAAAGCAGTGGTGTTATTTCAAAAAAA



consensusID : consensus_6875#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 898
fasta sequence
                              [CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCAGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTGTTTCTTTGAATTGAGCAGCGTATGCACGTTTTCAGTCCAGAAATAGTTCTCTGTTTTTCGCCTAATAGAATATACGCAAAAGAAGATGATAGTAGTCTTCGATATTTCAGTACGATTCAACAAAAGGCCTGTTGATGGACATGTATGAATAAGCTGATACTGTATTGTACCAACCAGAACACTA]

[+] EMBL AK100828             [CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCAGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTGTTTCTTTGAATTGAGCAGCGTATGCACGTTTTCAGTCCAGAAATAGTTCTCTGTTTTTCGCCTAATAGAATATACGCAAAAGAAGATGATAGTAGTCTTCGATATTTCAGTACGATTCAACAAAAGGCCTGTTGATGGACATGTATGAATAAGCTGATACTGTATTGTACCAACCAGAACACTA]


>consensus_6875#1 CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGT TCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCC TCAGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCT CCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGT GCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGT CGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACA TCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGC TCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCG AGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTC TTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAG ATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCC CCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTGTTTCTT TGAATTGAGCAGCGTATGCACGTTTTCAGTCCAGAAATAGTTCTCTGTTTTTCGCCTAAT AGAATATACGCAAAAGAAGATGATAGTAGTCTTCGATATTTCAGTACGATTCAACAAAAG GCCTGTTGATGGACATGTATGAATAAGCTGATACTGTATTGTACCAACCAGAACACTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6875#0      CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGT 60
consensus_6875#1      CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGT 60
                      ************************************************************

consensus_6875#0      TCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCC 120
consensus_6875#1      TCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCC 120
                      ************************************************************

consensus_6875#0      TCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCT 180
consensus_6875#1      TCAGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCT 180
                      ** *********************************************************

consensus_6875#0      CCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGT 240
consensus_6875#1      CCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGT 240
                      ************************************************************

consensus_6875#0      GCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGT 300
consensus_6875#1      GCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGT 300
                      ************************************************************

consensus_6875#0      CGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACA 360
consensus_6875#1      CGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACA 360
                      ************************************************************

consensus_6875#0      TCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGC 420
consensus_6875#1      TCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGC 420
                      ************************************************************

consensus_6875#0      TCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCG 480
consensus_6875#1      TCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCG 480
                      ************************************************************

consensus_6875#0      AGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTC 540
consensus_6875#1      AGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTC 540
                      ************************************************************

consensus_6875#0      TTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAG 600
consensus_6875#1      TTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAG 600
                      ************************************************************

consensus_6875#0      ATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCC 660
consensus_6875#1      ATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCC 660
                      ************************************************************

consensus_6875#0      CCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATT 720
consensus_6875#1      CCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTGTTTCTT 720
                      ****** *  *     *  ** **  **      * * * * ** *  * * *     **

consensus_6875#0      TCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGC 780
consensus_6875#1      TGAA----------TTGAGCAGCGTATGCACGTT-TTCAGTCCAGAA----ATAGTTCTC 765
                      * **          ***       *  ***     ** **** * **    *** *   *

consensus_6875#0      TATTTGACATGGCTTCTATTCGTACACCATTAGTAAAATTACGGCAGGTGCGCAATGATG 840
consensus_6875#1      TGTTTT---TCGCCTAATAGAATATACGCAAAAGAAGATGATAGTAG-TCTTCGATATTT 821
                      * ***    * ** *       ** **    *  ** ** *  * ** *   * **  * 

consensus_6875#0      TAAAGTTCTACCCTACACAGGAAATGG-GAAATTCATACTTTGATCATTACCCAGATCTC 899
consensus_6875#1      CA--GTACGATTCAACAAAAGGCCTGTTGATGGACATGTATGAATAA--GCTGATACTGT 877
                       *  ** * *  * *** * *   **  **    ***   *  ** *   *  * *    

consensus_6875#0      GTTGACCAAGTTATGCACACTAGCTTTCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTC 959
consensus_6875#1      ATTGTACCAACCA-GAACACTA-------------------------------------- 898
                       ***  * *   * * ******                                      

consensus_6875#0      TTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAA 1019
consensus_6875#1      ------------------------------------------------------------
                                                                                  

consensus_6875#0      GACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTC 1079
consensus_6875#1      ------------------------------------------------------------
                                                                                  

consensus_6875#0      AAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTC 1139
consensus_6875#1      ------------------------------------------------------------
                                                                                  

consensus_6875#0      ATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGAT 1199
consensus_6875#1      ------------------------------------------------------------
                                                                                  

consensus_6875#0      CGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGA 1259
consensus_6875#1      ------------------------------------------------------------
                                                                                  

consensus_6875#0      GTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAG 1319
consensus_6875#1      ------------------------------------------------------------
                                                                                  

consensus_6875#0      CAATAAAGCAGTGGTGTTATTTCAAAAAAA 1349
consensus_6875#1      ------------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)