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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1349 fasta sequence
[CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATTTCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGCTATTTGACATGGCTTCTATTCGTACACCATTAGTAAAATTACGGCAGGTGCGCAATGATGTAAAGTTCTACCCTACACAGGAAATGGGAAATTCATACTTTGATCATTACCCAGATCTCGTTGACCAAGTTATGCACACTAGCTTTCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTCTTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAAGACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTCAAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTCATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGATCGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGAGTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAGCAATAAAGCAGTGGTGTTATTTCAAAAAAA]
[+] EMBL AK069820 [CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATTTCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGCTATTTGACATGGCTTCTATTCGTACACCATTAGTAAAATTACGGCAGGTGCGCAATGATGTAAAGTTCTACCCTACACAGGAAATGGGAAATTCATACTTTGATCATTACCCAGATCTCGTTGACCAAGTTATGCACACTAGCTTTCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTCTTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAAGACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTCAAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTCATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGATCGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGAGTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAGCAATAAAGCAGTG ]
[+] EMBL OSR27831A [ CTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATTTCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGCTATTTGACATGGCTTCTATTCGTAC ]
[+] EMBL AU031947 [ AAGTTATGCACACTAGCTTNCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTCTTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAAGACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTCAAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTCATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGATCGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGAGTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAGCAATAAAGCAGTGGTGTTATTTCAAAAAAA]
consensusID : consensus_6875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 898 fasta sequence
[CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCAGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTGTTTCTTTGAATTGAGCAGCGTATGCACGTTTTCAGTCCAGAAATAGTTCTCTGTTTTTCGCCTAATAGAATATACGCAAAAGAAGATGATAGTAGTCTTCGATATTTCAGTACGATTCAACAAAAGGCCTGTTGATGGACATGTATGAATAAGCTGATACTGTATTGTACCAACCAGAACACTA]
[+] EMBL AK100828 [CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCCTCAGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCCCCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTGTTTCTTTGAATTGAGCAGCGTATGCACGTTTTCAGTCCAGAAATAGTTCTCTGTTTTTCGCCTAATAGAATATACGCAAAAGAAGATGATAGTAGTCTTCGATATTTCAGTACGATTCAACAAAAGGCCTGTTGATGGACATGTATGAATAAGCTGATACTGTATTGTACCAACCAGAACACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6875#0 CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGT 60
consensus_6875#1 CAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCATGCAGT 60
************************************************************
consensus_6875#0 TCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCC 120
consensus_6875#1 TCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCTACTTCC 120
************************************************************
consensus_6875#0 TCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCT 180
consensus_6875#1 TCAGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATGGCGTCT 180
** *********************************************************
consensus_6875#0 CCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGT 240
consensus_6875#1 CCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACGGCGAGT 240
************************************************************
consensus_6875#0 GCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGT 300
consensus_6875#1 GCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGAAGGAGT 300
************************************************************
consensus_6875#0 CGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACA 360
consensus_6875#1 CGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCGTCGACA 360
************************************************************
consensus_6875#0 TCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGC 420
consensus_6875#1 TCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACATGGTGC 420
************************************************************
consensus_6875#0 TCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCG 480
consensus_6875#1 TCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCAGCAGCG 480
************************************************************
consensus_6875#0 AGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTC 540
consensus_6875#1 AGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGGTAATTC 540
************************************************************
consensus_6875#0 TTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAG 600
consensus_6875#1 TTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAACATTAG 600
************************************************************
consensus_6875#0 ATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCC 660
consensus_6875#1 ATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTTCCATCC 660
************************************************************
consensus_6875#0 CCCCGGGGTCACAAGGTGTTATATGGCCGGCACATATCAACAGTAGACCGGATTCAGATT 720
consensus_6875#1 CCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTGTTTCTT 720
****** * * * ** ** ** * * * * ** * * * * **
consensus_6875#0 TCAAGCAGAGGTTATTGGATGCTCTCAGCAAACCATTTAGTCGAAAAGAATATATTAAGC 780
consensus_6875#1 TGAA----------TTGAGCAGCGTATGCACGTT-TTCAGTCCAGAA----ATAGTTCTC 765
* ** *** * *** ** **** * ** *** * *
consensus_6875#0 TATTTGACATGGCTTCTATTCGTACACCATTAGTAAAATTACGGCAGGTGCGCAATGATG 840
consensus_6875#1 TGTTTT---TCGCCTAATAGAATATACGCAAAAGAAGATGATAGTAG-TCTTCGATATTT 821
* *** * ** * ** ** * ** ** * * ** * * ** *
consensus_6875#0 TAAAGTTCTACCCTACACAGGAAATGG-GAAATTCATACTTTGATCATTACCCAGATCTC 899
consensus_6875#1 CA--GTACGATTCAACAAAAGGCCTGTTGATGGACATGTATGAATAA--GCTGATACTGT 877
* ** * * * *** * * ** ** *** * ** * * * *
consensus_6875#0 GTTGACCAAGTTATGCACACTAGCTTTCCAAATGGTTTAGCTCTGATGCGTGGGTTTTTC 959
consensus_6875#1 ATTGTACCAACCA-GAACACTA-------------------------------------- 898
*** * * * * ******
consensus_6875#0 TTCTGGTTGCAGAATAATGCACATGAAGATCAATTCAGGCCATGGGTTGATGTTTCTAAA 1019
consensus_6875#1 ------------------------------------------------------------
consensus_6875#0 GACCACGAGGTTATTCCTTTGATCGATTGAGATTTACACATTGCAGCTGGTCAAACCCTC 1079
consensus_6875#1 ------------------------------------------------------------
consensus_6875#0 AAGTCCAAAACATTAAACATCTATTTGCGGGAATGACTCTCTTAAGGGTGACGTAATGTC 1139
consensus_6875#1 ------------------------------------------------------------
consensus_6875#0 ATCAGCAGAGATTGTCTCGTATCTATATGGAATGAGATAAATAAATATATTGCCAATGAT 1199
consensus_6875#1 ------------------------------------------------------------
consensus_6875#0 CGAGAAATAATTCCCTATTGGAATATGCGCACATCCTCTTTGCAAATAATTTAACATTGA 1259
consensus_6875#1 ------------------------------------------------------------
consensus_6875#0 GTTTTGCCTGTGAATTTGAGGGCTGGATTCCATGTTCTACCTGATCTCACCATCATAAAG 1319
consensus_6875#1 ------------------------------------------------------------
consensus_6875#0 CAATAAAGCAGTGGTGTTATTTCAAAAAAA 1349
consensus_6875#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||