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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1006 fasta sequence
[GAGAGAGGAGGAGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGCAGCTAGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAAGGCTGTTACGGTTATCTTGGTTCATGAATGCAAAGTGCAGTTCACATCAGCTGTTGTAAATGATTATTACTTCTATAAAATTCTAATTCATTGCTGCCAAAACCCAAATCGGCCTATAGGGAAGAATAATACCCGCGGCTAATTGGCCCCCGTTTACAATCGCCGGACCGGGAAAACCCTCGATATTACACTACTCTTGTGGGGGGGCCCGGGACCCAAATTTCCCTATTGGGGGGTTTATTCACCGCGCCCCTTTGCGCCTGGTTTTACCAACGGGGGGCGGGAGAAACCTCGGGGTGATGGCCAATCTAATTTGTCTTGGGGCCATATCCCCCTTTTGGCCGTTGGGGGTAAAACAAAAAGGGCCCCGCAACCTTTCCCCTTCCCAACAATTCGGCACCTTAAAGTGAAAGTGGTGCCCCCCTCTAAAGAGGCCCTATAATCCCGCGGGGGGGTGGTGTGTACGCCCTCTTTGTCTTCGGTTAATTTTTTAAGGGGCCTTTTGGCCCCCTNTTTTCCACAATTATTTTTAATTTTCTTTCTCGGCGCCACACAGACGAGCCTTCCCCCGCAAGATAAAAAAAATATGCGCGCCTCTCTAGTGGGTTCCTCCCTGGCTTT]
[+] EMBL BE040107 [GAGAGAGGAGGAGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGCAGCTAGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAAGGCTGTTACGGTTATCTTGGTTCATGAATGCAAAGTGCAGTTCACATCAGCTGTTGTAAATGATTATTACTTCTATAAAATTCTAATTCATTGCTGCCAAAACCCAAATCGGCCTATAGGGAAGAATAATACCCGCGGCTAATTGGCCCCCGTTTACAATCGCCGGACCGGGAAAACCCTCGATATTACACTACTCTTGTGGGGGGGCCCGGGACCCAAATTTCCCTATTGGGGGGTTTATTCACCGCGCCCCTTTGCGCCTGGTTTTACCAACGGGGGGCGGGAGAAACCTCGGGGTGATGGCCAATCTAATTTGTCTTGGGGCCATATCCCCCTTTTGGCCGTTGGGGGTAAAACAAAAAGGGCCCCGCAACCTTTCCCCTTCCCAACAATTCGGCACCTTAAAGTGAAAGTGGTGCCCCCCTCTAAAGAGGCCCTATAATCCCGCGGGGGGGTGGTGTGTACGCCCTCTTTGTCTTCGGTTAATTTTTTAAGGGGCCTTTTGGCCCCCTNTTTTCCACAATTATTTTTAATTTTCTTTCTCGGCGCCACACAGACGAGCCTTCCCCCGCAAGATAAAAAAAATATGCGCGCCTCTCTAGTGGGTTCCTCCCTGGCTTT]
consensusID : consensus_6877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence
[GCCCTGACGCCCCCCTCGCCGNCCGCGGTGGCGGTGCGGAGCGACGGGACGGTGGCGGTGGGCGGCGGCGCCACGCTGCGCCTCGTCGGCAGCAACGACGGGTGGTCGTCGTGCGCCGAGCGCGACGAGGCCGAGCCGGACGGCGGCGCCGCCGCCGCCGTGGCGGCCGTGGCGGTGAGGGAGCGGAGGCGGGTGTACGCGCTGGTGGCGGCGGCGGACGCGGAGAAGGCGGCGGCGTGGCGGATCGAGGAGGTGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGGAGCTCGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAA-GGCTGTTACGGTTATCTTGGTTCATGAATGCAAAGTGCAGTTCACATCAGCTGTTGTAAATGATTATTAATGCTATAAAATTCTAATTCATTACTACCTAGGATAAAAAAGGA]
[-] EMBL CB661070 [GCCCTGACGCCCCCCTCGCCGNCCGCGGTGGCGGTGCGGAGCGACGGGACGGTGGCGGTGGGCGGCGGCGCCACGCTGCGCCTCGTCGGCAGCAACGACGGGTGGTCGTCGTGCGCCGAGCGCGACGAGGCCGAGCCGGACGGCGGCGCCGCCGCCGCCGTGGCGGCCGTGGCGGTGAGGGAGCGGAGGCGGGTGTACGCGCTGGTGGCGGCGGCGGACGCGGAGAAGGCGGCGGCGTGGCGGATCGAGGAGGTGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGGAGCTCGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAAGGGCTGTTACGGTTATCTTGGTTCATGAATGCAAAGTGCAGTTCACATCAGCTGTTGTAAATGATTATTAATGCTATAAAATTCTAATTCATTACTACCTAGGATAAAAAAGGA]
[+] EMBL AU174580 [ TGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGGAGCTCGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAA GGCTGTTACGGTTATC ]
[+] EMBL AU174579 [ GAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGGAGCTCGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAA GGCTGTTACGGTTATCTTGGTTCATGAATGCAAAGTGCAGTTCGCATCAGCTGTTGTAAATGATTATTACTTCTATAAAATTCTAATTCATTACTACCTAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6877#0 ------------------------------------------------------------
consensus_6877#1 GCCCTGACGCCCCCCTCGCCGNCCGCGGTGGCGGTGCGGAGCGACGGGACGGTGGCGGTG 60
consensus_6877#0 ------------------------------------------------------------
consensus_6877#1 GGCGGCGGCGCCACGCTGCGCCTCGTCGGCAGCAACGACGGGTGGTCGTCGTGCGCCGAG 120
consensus_6877#0 ------------------------------------------------------------
consensus_6877#1 CGCGACGAGGCCGAGCCGGACGGCGGCGCCGCCGCCGCCGTGGCGGCCGTGGCGGTGAGG 180
consensus_6877#0 ------------------------------------------------------------
consensus_6877#1 GAGCGGAGGCGGGTGTACGCGCTGGTGGCGGCGGCGGACGCGGAGAAGGCGGCGGCGTGG 240
consensus_6877#0 --GAGAGAGGAGGAGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTC 58
consensus_6877#1 CGGATCGAGGAGGTGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTC 300
** ******* **********************************************
consensus_6877#0 TTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGCAGCTAGCC 118
consensus_6877#1 TTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGGAGCTCGCC 360
*************************************************** **** ***
consensus_6877#0 GGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTG 178
consensus_6877#1 GGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTG 420
************************************************************
consensus_6877#0 TTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGC 238
consensus_6877#1 TTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGC 480
************************************************************
consensus_6877#0 GACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTA 298
consensus_6877#1 GACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTA 540
************************************************************
consensus_6877#0 TCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGT 358
consensus_6877#1 TCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGT 600
************************************************************
consensus_6877#0 ACACGATGTAGTAGAATTTGATCAAAAGGCTGTTACGGTTATCTTGGTTCATGAATGCAA 418
consensus_6877#1 ACACGATGTAGTAGAATTTGATCAAAAGGCTGTTACGGTTATCTTGGTTCATGAATGCAA 660
************************************************************
consensus_6877#0 AGTGCAGTTCACATCAGCTGTTGTAAATGATTATTACTTCTATAAAATTCTAATTCATTG 478
consensus_6877#1 AGTGCAGTTCACATCAGCTGTTGTAAATGATTATTAATGCTATAAAATTCTAATTCATTA 720
************************************ * ********************
consensus_6877#0 CTGCCAAAACCCAAATCGGCCTATAGGGAAGAATAATACCCGCGGCTAATTGGCCCCCGT 538
consensus_6877#1 CTACCTAGGATAAAAAAGGA---------------------------------------- 740
** ** * *** **
consensus_6877#0 TTACAATCGCCGGACCGGGAAAACCCTCGATATTACACTACTCTTGTGGGGGGGCCCGGG 598
consensus_6877#1 ------------------------------------------------------------
consensus_6877#0 ACCCAAATTTCCCTATTGGGGGGTTTATTCACCGCGCCCCTTTGCGCCTGGTTTTACCAA 658
consensus_6877#1 ------------------------------------------------------------
consensus_6877#0 CGGGGGGCGGGAGAAACCTCGGGGTGATGGCCAATCTAATTTGTCTTGGGGCCATATCCC 718
consensus_6877#1 ------------------------------------------------------------
consensus_6877#0 CCTTTTGGCCGTTGGGGGTAAAACAAAAAGGGCCCCGCAACCTTTCCCCTTCCCAACAAT 778
consensus_6877#1 ------------------------------------------------------------
consensus_6877#0 TCGGCACCTTAAAGTGAAAGTGGTGCCCCCCTCTAAAGAGGCCCTATAATCCCGCGGGGG 838
consensus_6877#1 ------------------------------------------------------------
consensus_6877#0 GGTGGTGTGTACGCCCTCTTTGTCTTCGGTTAATTTTTTAAGGGGCCTTTTGGCCCCCTN 898
consensus_6877#1 ------------------------------------------------------------
consensus_6877#0 TTTTCCACAATTATTTTTAATTTTCTTTCTCGGCGCCACACAGACGAGCCTTCCCCCGCA 958
consensus_6877#1 ------------------------------------------------------------
consensus_6877#0 AGATAAAAAAAATATGCGCGCCTCTCTAGTGGGTTCCTCCCTGGCTTT 1006
consensus_6877#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||