These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1846 fasta sequence [GCCGCCGCCGCTTTTTCTTCCCTCCCCCGCTTCTCCTCGCCGGCGACGACGACTTGCCCCTCGAGCTCTCCCCTATCCTGCCCATCTCCTGGCGCTCCCTCCCTCCCTTCGCTTGCATCCTCACGCCATCGTCGGCCCCGCCTTCCCCTTCTCATCTGTTCCCAGCGATGGCATGGGGATCAATCTGCTGACCCAGGCCCTTCTCTTCTAGCAGGGGGAGTGGACCATGCGGAGCTAGCTTTGGGGGCACTGTGATAGAGATCGATGGTGTGGCTGTGTGGGGATCGATCTGTTGGCCCATCGCCTGATTTTGGGTAGGTGCACTCAAGCTCAACATGAAGTTCTCAATCCAGTGCGTTGCGCTCGAGGTCGGCATAGCCGCCGCCGCCGCCTCTCTCCCTCCTAGCTCTCCCTTACGAGAA-GTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGGGAGCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTCGATGTTCTACCTCCAGCGTTGATGGTAATCCCAAGCA-CTTGAAGGCTTGAAGTCGATATGGCACAATTTTGCTA-TGGGGAAGAAGATGTGTTGTTGCAATGGGCCAAATAATCANCTCCTTTAATGNTCGATCCAATCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTGCTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCTGGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCCATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTTCAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTTATTACACAGTTATTTTGTGAGTTTACATGATGCTTCTTTGAAATGAAAAATCTCCAAGAATCTGACAAAGCTAGAAACTCAGGTAAGTTTGACAAATGTCACTATATTGTTTTGATTTTGCACATGATTGTGTGATGAAGTTCGCTTTGTCAGTTAATTTGTACCCACCGAAGGTTCCATATCAGATCCCACATGTCTGAATGCTCATTTCTACTATAACCTTCCATTCCCAAATTCTTTGTTTCTTTACATACATGAGCACTCCTTAATTTGTTGACAAATCAAGTTTGCTTCATAAATGTAATATTGGTATCGGCAAGTAACAACAAATCTGAAACTATTATTTGCTTTGGAGGTAAACATGTTCTATACATATAATTGGGTTGCGTGCTTTTTTTTATAGGGCATTGTTAGCAACTTACCATATAACAGGACTGTCAGATTTTTTATGTGTTGCTTGTTCTTCGCTTTGTACATGTCCATTTTGGTAAATGGTGTACGATTTTTTTTCTGGACTTATGTTCTTCAAGCATTGTAGGGTTGCAGTCTTATTAGTCATCTACTACTGTAGCCTTATCTATAATGTGCATTTTGGAAGTGACGTTTCAGATTTTGGTATTAACTATAAAGACTGAGAACCCATGCCACATACTTTGTAGAACTCCCATGTGTATTGGAGTAATGTGATTAGTTATCCAAAACATTATTGTTCATCAGAAATGATTTCAGTAATGTATTACTTGGGCATATGACTTTTCTAAAGAGTGTCTTATCTAACCAACTAGCTTTTCTGTTGCCTCATAAAAAACATTTAGTTAATCAGAGACTATTTTAGGGGGGAGCTGTCCTACAAATGAATTTCTGCTTCATTAACATAAGCAGATGTTTC] [+] EMBL AU070287 [GCCGCCGCCGCTTTTTCTTCCCTCCCCCGCTTCTCCTCGCCGGCGACGACGACTTGCCCCTCGAGCTCTCCCCTATCCTGCCCATCTCCTGGCGCTCCCTCCCTCCCTTCGCTTGCATCCTCACGCCATCGTCGGCCCCGCCTTCCCCTTCTCATCTGTTCCCAGCGATGGCATGGGGATCAATCTGCTGACCCAGGCCCTTCTCTTCTAGCAGGGGGAGTGGACCATGCGGAG TAGCTTTGGGGGCACTGTGATAGAGATCGATGGTGTGGCTGTGTGGGGATCGATCTGTTGGCCCATCGCCTGATTTTGGGTAGGTGCACTCAAGCTCAACATGAAGTTCTCAATCCAGTGCGTTGCGCTCGAGGTCGGCATAGCCGCCGCCGCCGCCTCTCTCCCTCCTAGCTCTCCCTTACGAGAA GTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGGGAGCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTCGATGTTCTACCTCCAGCGTTGATGGTAATCCCAAGCA CTTGAAGGCTTGAAGTCGATATGGCACAATTTTGCTA TGGGGAAGAAGATGTGTTGTTGCAATGGGCCAAATAATCANCTCCTTTAATGNTCGATCCAATCATGATCTTCCTCCCAT ] [+] EMBL AK067044 [ TTCCCTCCCCCGCTTCTCCTCGCCGGCGACGACGACTTGCCCCTCGAGCTCTCCCCTATCCTGCCCATCTCCTGGCGCTCCCTCCCTCCCTTCGCTTGCATCCTCACGCCATCGTCGGCCCCGCCTTCCCCTTCTCATCTGTTCCCAGCGATGGCATGGGGATCAATCTGCTGACCCAGGCCCTTCTCTTCTAGCAGGGGGAGTGGACCATGCGGAGCTAGCTTTGGGGGCACTGTGATAGAGATCGATGGTGTGGCTGTGTGGGGATCGATCTGTTGGCCCATCGCCTGATTTTGGGTAGGTGCACTCAAGCTCAACATGAAGTTCTCAATCCAGTGCGTTGCGCTCGAGGTCGGCATAGCCGCCGCCGCCGCCTCTCTCCCTCCTAGCTCTCCCTTACGAGAAGGTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGAT GGAGCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTCGATGTTCTACCTCCAGCGTTGATGGTAATCCCAGGCACCTTGAGGGCTTGAGGTCGATATGGCACAATTTTGCTACTGGGGAAGAAGATGTGTTGTTGCAAT GGCCAAATAATCACCTCCTTT ATGCTCGATCCACTCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTGCTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCTGGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCCATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTTCAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTTATTACACAGTTATTTTGTGAGTTTACATGATGCTTCTTTGAAATGAAAAATCTCCAAGAATCTGACAAAGCTAGAAACTCAGGTAAGTTTGACAAATGTCACTATATTGTTTTGATTTTGCACATGATTGTGTGATGAAGTTCGCTTTGTCAGTTAATTTGTACCCACCGAAGGTTCCATATCAGATCCCACATGTCTGAATGCTCATTTCTACTATAACCTTCCATTCCCAAATTCTTTGTTTCTTTACATACATGAGCACTCCTTAATTTGTTGACAAATCAAGTTTGCTTCATAAATGTAATATTGGTATCGGCAAGTAACAACAAATCTGAAACTATTATTTGCTTTGGAGGTAAACATGTTCTATACATATAATTGGGTTGCGTGCTTTTTTTTATAGGGCATTGTTAGCAACTTACCATATAACAGGACTGTCAGATTTTTTATGTGTTGCTTGTTCTTCGCTTTGTACATGTCCATTTTGGTAAATGGTGTACGATTTTTTTTCTGGACTTATGTTCTTCAAGCATTGTAGGGTTGCAGTCTTATTAGTCATCTACTACTGTAGCCTTATCTATAATGTGCATTTTGGAAGTGACGTTTCAGATTTTGGTATTAACTATAAAGACTGAGAACCCATGCCACATACTTTGTAGAACTCCCATGTGTATTGGAGTAATGTGATTAGTTATCCAAAACATTATTGTTCATCAGAAATGATTTCAGTAATGTATTACTTGGGCATATGACTTTTCTAAAGAGTGTCTTATCTAACCAACTAGCTTTTCTGTTGCCTCATAAAAAACATTTAGTTAATCAGAGACTATTTTAGGGGGGAGCTGTCCTACAAATGAATTTCTGCTTCATTAACATAAGCAGATGTTTC] [+] EMBL CB640801 [ CCGCTTCTCCTCGCCGGCGACGACGACTTGCCCCTCGAGCTCTCCCCTATCCTGCCCATCTCCTGGCGCTCCCTCCCTCCCTTCGCTTGCATCCTCACGCCATCGTCGGCCCCGCCTTCCCCTTCTCATCTGTTCCCAGCGATGGCATGGGGATCAATCTGCTGACCCAGGCCCTTCTCTTCTAGCAGGGGGAGTGGACCATGCGGAGCTAGCTTTGGGGGCACTGTGATAGAGATCGATGGTGTGGCTGTGTGGGGATCGATCTGTTGGCCCATCGCCTGATTTTGGGTAGGTGCACTCAAGCTCAACATGAAGTTCTCAATCCAGT ] consensusID : consensus_6883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [CCCATCGCCTGATTTTGGGAGAAGGTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGGAGCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTCGATGTTCTACCTCCAGCGTTGATGGTAATCCCAGGCACCTTGAGGGCTTGAGGTCGATATGGCACAATTTTGCTACTGGGGAAGAAGATGTGTTGTTGCAATGGCCAAATAATCACCTCCTTTATGCTCGATCCACTCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTGCTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCTGGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCCATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTTCAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTTATTACACAGTTATTTTGTGAGT] [+] EMBL CB638184 [CCCATCGCCTGATTTTGGGAGAAGGTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGGAGCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTCGATGTTCTACCTCCAGCGTTGATGGTAATCCCAGGCACCTTGAGGGCTTGAGGTCGATATGGCACAATTTTGCTACTGGGGAAGAAGATGTGTTGTTGCAATGGCCAAATAATCACCTCCTTTATGCTCGATCCACTCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTGCTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCTGGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCCATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTTCAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTTATTACACAGTTATTTTGTGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6883#0 GCCGCCGCCGCTTTTTCTTCCCTCCCCCGCTTCTCCTCGCCGGCGACGACGACTTGCCCC 60 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 TCGAGCTCTCCCCTATCCTGCCCATCTCCTGGCGCTCCCTCCCTCCCTTCGCTTGCATCC 120 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 TCACGCCATCGTCGGCCCCGCCTTCCCCTTCTCATCTGTTCCCAGCGATGGCATGGGGAT 180 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 CAATCTGCTGACCCAGGCCCTTCTCTTCTAGCAGGGGGAGTGGACCATGCGGAGCTAGCT 240 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 TTGGGGGCACTGTGATAGAGATCGATGGTGTGGCTGTGTGGGGATCGATCTGTTGGCCCA 300 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 TCGCCTGATTTTGGGTAGGTGCACTCAAGCTCAACATGAAGTTCTCAATCCAGTGCGTTG 360 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 CGCTCGAGGTCGGCATAGCCGCCGCCGCCGCCTCTCTCCCTCCTAGCTCTCCCTTACGAG 420 consensus_6883#1 ---------------------------------------CCCATCGCCTGATTTTGGGAG 21 * * * ** ** *** consensus_6883#0 AAG-TGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGGGA 479 consensus_6883#1 AAGGTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGG-A 80 *** ****************************************************** * consensus_6883#0 GCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTC 539 consensus_6883#1 GCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTC 140 ************************************************************ consensus_6883#0 GATGTTCTACCTCCAGCGTTGATGGTAATCCCAAGCAC-TTGAAGGCTTGAAGTCGATAT 598 consensus_6883#1 GATGTTCTACCTCCAGCGTTGATGGTAATCCCAGGCACCTTGAGGGCTTGAGGTCGATAT 200 ********************************* **** **** ******* ******** consensus_6883#0 GGCACAATTTTGCTA-TGGGGAAGAAGATGTGTTGTTGCAATGGGCCAAATAATCANCTC 657 consensus_6883#1 GGCACAATTTTGCTACTGGGGAAGAAGATGTGTTGTTGCAATGG-CCAAATAATCACCTC 259 *************** **************************** *********** *** consensus_6883#0 CTTTAATGNTCGATCCAATCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTG 717 consensus_6883#1 CTTTA-TGCTCGATCCACTCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTG 318 ***** ** ******** ****************************************** consensus_6883#0 CTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCT 777 consensus_6883#1 CTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCT 378 ************************************************************ consensus_6883#0 GGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCC 837 consensus_6883#1 GGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCC 438 ************************************************************ consensus_6883#0 ATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTT 897 consensus_6883#1 ATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTT 498 ************************************************************ consensus_6883#0 CAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTT 957 consensus_6883#1 CAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTT 558 ************************************************************ consensus_6883#0 ATTACACAGTTATTTTGTGAGTTTACATGATGCTTCTTTGAAATGAAAAATCTCCAAGAA 1017 consensus_6883#1 ATTACACAGTTATTTTGTGAGT-------------------------------------- 580 ********************** consensus_6883#0 TCTGACAAAGCTAGAAACTCAGGTAAGTTTGACAAATGTCACTATATTGTTTTGATTTTG 1077 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 CACATGATTGTGTGATGAAGTTCGCTTTGTCAGTTAATTTGTACCCACCGAAGGTTCCAT 1137 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 ATCAGATCCCACATGTCTGAATGCTCATTTCTACTATAACCTTCCATTCCCAAATTCTTT 1197 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 GTTTCTTTACATACATGAGCACTCCTTAATTTGTTGACAAATCAAGTTTGCTTCATAAAT 1257 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 GTAATATTGGTATCGGCAAGTAACAACAAATCTGAAACTATTATTTGCTTTGGAGGTAAA 1317 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 CATGTTCTATACATATAATTGGGTTGCGTGCTTTTTTTTATAGGGCATTGTTAGCAACTT 1377 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 ACCATATAACAGGACTGTCAGATTTTTTATGTGTTGCTTGTTCTTCGCTTTGTACATGTC 1437 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 CATTTTGGTAAATGGTGTACGATTTTTTTTCTGGACTTATGTTCTTCAAGCATTGTAGGG 1497 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 TTGCAGTCTTATTAGTCATCTACTACTGTAGCCTTATCTATAATGTGCATTTTGGAAGTG 1557 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 ACGTTTCAGATTTTGGTATTAACTATAAAGACTGAGAACCCATGCCACATACTTTGTAGA 1617 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 ACTCCCATGTGTATTGGAGTAATGTGATTAGTTATCCAAAACATTATTGTTCATCAGAAA 1677 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 TGATTTCAGTAATGTATTACTTGGGCATATGACTTTTCTAAAGAGTGTCTTATCTAACCA 1737 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 ACTAGCTTTTCTGTTGCCTCATAAAAAACATTTAGTTAATCAGAGACTATTTTAGGGGGG 1797 consensus_6883#1 ------------------------------------------------------------ consensus_6883#0 AGCTGTCCTACAAATGAATTTCTGCTTCATTAACATAAGCAGATGTTTC 1846 consensus_6883#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||