cluster # 6885

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Oryza sativa
cluster # 6885 cluster # 6885 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6885#0 length = 795 sequences # 1

consensus_6885#1 length = 650 sequences # 2
consensus_6885#2 length = 335 sequences # 1

consensusID : consensus_6885#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 795
fasta sequence

                              [TTTTTGTTTTTTTTCTCCAATTTGTTGGATATAATCACCCCTTGAAGTACAAGTTTAATATTCGGTTTGCTATTACATATATACGCCTAATTAAACACATGCAAGACAATCAAATCATCCAATGAAATGAATCGATCAATATCCTCCCCTAAACACGCAAATTAACCCCACCGGCCGATTCCAGTCCCAAATATAAACAAGAAACAAAGCCGTACGTGTACGTATGTACCACACGAGTATACCACATCATCACCACCACTATGAAGAAACCAACAATCAACTAGCTGTACAAATAACAGGATCAGACGACGGCGATCGACATGGATGGATCCCATCAAATCAGATGTAGGTCTGCTTGGCGAGCTTGAAGCCGGAAACGAGGGCGGAGAGGGCGAGGCAAAGGAAGGCGAAAAAGGCCATGCTGATGGACGCCGCCGACGAGTCGGTGAACACGTTGTCCGCGCCTTCCCTCATCCTGTTCGTTATCGGGATCGCCGCCGACACCGCCGACATCAGCAGGTACGCCGTCACCTGCAGTAGCACCATATGCGTATCGAAACCACGATAAAACATTAGTGTTTTAGCGTGCATTGTATATATACTAGCTTCATTTTTTAATATATAATGCACAACACGTTTAATCATTTATTTTATTTCAAAAATAGTTAATTATTATACATTTGTTGTGGGTTGTTTTATCGTTAAAAATACTTTAAGCATAATTTATATATTATATATTTTTTTCAAAACTTTTGAATAAGATAATGGTTAAGCATGTGTTAAAAATTAACTATG]

[+] EMBL CB672461             [TTTTTGTTTTTTTTCTCCAATTTGTTGGATATAATCACCCCTTGAAGTACAAGTTTAATATTCGGTTTGCTATTACATATATACGCCTAATTAAACACATGCAAGACAATCAAATCATCCAATGAAATGAATCGATCAATATCCTCCCCTAAACACGCAAATTAACCCCACCGGCCGATTCCAGTCCCAAATATAAACAAGAAACAAAGCCGTACGTGTACGTATGTACCACACGAGTATACCACATCATCACCACCACTATGAAGAAACCAACAATCAACTAGCTGTACAAATAACAGGATCAGACGACGGCGATCGACATGGATGGATCCCATCAAATCAGATGTAGGTCTGCTTGGCGAGCTTGAAGCCGGAAACGAGGGCGGAGAGGGCGAGGCAAAGGAAGGCGAAAAAGGCCATGCTGATGGACGCCGCCGACGAGTCGGTGAACACGTTGTCCGCGCCTTCCCTCATCCTGTTCGTTATCGGGATCGCCGCCGACACCGCCGACATCAGCAGGTACGCCGTCACCTGCAGTAGCACCATATGCGTATCGAAACCACGATAAAACATTAGTGTTTTAGCGTGCATTGTATATATACTAGCTTCATTTTTTAATATATAATGCACAACACGTTTAATCATTTATTTTATTTCAAAAATAGTTAATTATTATACATTTGTTGTGGGTTGTTTTATCGTTAAAAATACTTTAAGCATAATTTATATATTATATATTTTTTTCAAAACTTTTGAATAAGATAATGGTTAAGCATGTGTTAAAAATTAACTATG]




>consensus_6885#0
TTTTTGTTTTTTTTCTCCAATTTGTTGGATATAATCACCCCTTGAAGTACAAGTTTAATA
TTCGGTTTGCTATTACATATATACGCCTAATTAAACACATGCAAGACAATCAAATCATCC
AATGAAATGAATCGATCAATATCCTCCCCTAAACACGCAAATTAACCCCACCGGCCGATT
CCAGTCCCAAATATAAACAAGAAACAAAGCCGTACGTGTACGTATGTACCACACGAGTAT
ACCACATCATCACCACCACTATGAAGAAACCAACAATCAACTAGCTGTACAAATAACAGG
ATCAGACGACGGCGATCGACATGGATGGATCCCATCAAATCAGATGTAGGTCTGCTTGGC
GAGCTTGAAGCCGGAAACGAGGGCGGAGAGGGCGAGGCAAAGGAAGGCGAAAAAGGCCAT
GCTGATGGACGCCGCCGACGAGTCGGTGAACACGTTGTCCGCGCCTTCCCTCATCCTGTT
CGTTATCGGGATCGCCGCCGACACCGCCGACATCAGCAGGTACGCCGTCACCTGCAGTAG
CACCATATGCGTATCGAAACCACGATAAAACATTAGTGTTTTAGCGTGCATTGTATATAT
ACTAGCTTCATTTTTTAATATATAATGCACAACACGTTTAATCATTTATTTTATTTCAAA
AATAGTTAATTATTATACATTTGTTGTGGGTTGTTTTATCGTTAAAAATACTTTAAGCAT
AATTTATATATTATATATTTTTTTCAAAACTTTTGAATAAGATAATGGTTAAGCATGTGT
TAAAAATTAACTATG

consensusID : consensus_6885#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 650
fasta sequence

                              [ATCATATGTAGGTCTGCTTGGCGAGCTTGAAGCCGGAGACGAGGGCGGAGAGGGCGAGACAGAGGAAGGCGAAGAAGGCCATGGTGATGGACTCCGCCGACGAGTCGGTGAACACGTTGTCCGCGCCTTCCCTCATCCTGTTCGCTATCCGGATCGCCGCAGACACCGCTGACATCAGCAGTTACGCCGTCACCTGATCTCCGGCGAAGTCGACGAGTACGGCGACCTTGCCCTGCAGGTCTTGCCCGCCGGTGAGCCGTACGCCGTGCCGCACCAGTTGCAGCGTCGTGTAGATGAA-GGCGAGCACCCCGATCGCGACCACGTACCTGTACTCCTCGTAGTGCTCGAACTGCCTCCAGTCGCCGTGGTCGTTGGCGCCCATGACGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGACGCGGAGCGCCGACCCGGACTTCTCCAGGAGGTCCTGCCGCCGCCAGCGCCGCACCACGGCGCTCACCACGCCCTCGCCCGACGCCGCCGCCGCCGCCGGGGCGCCGCCGCCGTCGACGTTGGCGTCTGCGGCCGCGGCGCCCTTCTCGACGTCGGCGGCGGGGGCGCCCGAGGAGGCTGCTACGGCGGCGCTCATGGCGCGCGCGTTCTCGGGGACGGATTCGCGGAGT]

[-] EMBL CB628271             [ATCATATGTAGGTCTGCTTGGCGAGCTTGAAGCCGGAGACGAGGGCGGAGAGGGCGAGACAGAGGAAGGCGAAGAAGGCCATGGTGATGGACTCCGCCGACGAGTCGGTGAACACGTTGTCCGCGCCTTCCCTCATCCTGTTCGCTATCCGGATCGCCGCAGACACCGCTGACATCAGCAGTTACGCCGTCACCTGATCTCCGGCGAAGTCGACGAGTACGGCGACCTTGCCCTGCAGGTCTTGCCCGCCGGTGAGCCGTACGCCGTGCCGCACCAGTTGCAGCGTCGTGTAGATGAA GGCGAGCACCCCGATCGCGACCACGTACCTGTACTCCTCGTAGTGCTCGAACTGCCTCCAGTCGCCGTGGTCGTTGGCGCCCATGACGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGACGCGGAGCGCCGACCCGGACTTCTCCAGGAGGTCCTGCCGCCGCCAGCGCCGCACCACGGCGCTCACCACGCCCTCGCCCGACGCCGCCGCCGCCGCCGGGGCGCCGCCGCCGTCGACGTTGGCGTCTGCGGCCGCGGCGCCCTTCTCGACGTCGGCGGCGGGGGCGCCCGAGGAGGCTGCTACGGCGGCGCTCATGGCGCGC                           ]
[-] EMBL CB672460             [                                                                                                                                                                                                                                     GCCCTGCAGGTCCTGGCCGCCGGTGAGCCGTACGCCGTGCCGCACCAGCTGCAGCGTCGTGTAGATGAAGGGCGAGCACCCCGATCGCGACCACGTACCTGTACTCCTCGTAGTGCTCGAACTGCCTCCAGTCGCCGTGGTCGTTGGCGCCCATGACGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGACGCGGAGCGCCGACCCGGACTTCTCCAGGAGGTCCTGCCGCCGCCAGCGCCGCACCACGGCGCTCACCACGCCCTCGCCCGACGCCGCCGCCGCCGCCGGGGCGCCGCCGCCGTCGACGTTGGCGTCTGCGGCCGCGGCGCCCTTCTCGACGTCGGCGGCGGGGGCGCCCGAGGAGGCTGCTACGGCGGCGCTCATGGCGCGCGCGTTCTCGGGGACGGATTCGCGGAGT]




>consensus_6885#1
ATCATATGTAGGTCTGCTTGGCGAGCTTGAAGCCGGAGACGAGGGCGGAGAGGGCGAGAC
AGAGGAAGGCGAAGAAGGCCATGGTGATGGACTCCGCCGACGAGTCGGTGAACACGTTGT
CCGCGCCTTCCCTCATCCTGTTCGCTATCCGGATCGCCGCAGACACCGCTGACATCAGCA
GTTACGCCGTCACCTGATCTCCGGCGAAGTCGACGAGTACGGCGACCTTGCCCTGCAGGT
CTTGCCCGCCGGTGAGCCGTACGCCGTGCCGCACCAGTTGCAGCGTCGTGTAGATGAAGG
CGAGCACCCCGATCGCGACCACGTACCTGTACTCCTCGTAGTGCTCGAACTGCCTCCAGT
CGCCGTGGTCGTTGGCGCCCATGACGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGA
CGCGGAGCGCCGACCCGGACTTCTCCAGGAGGTCCTGCCGCCGCCAGCGCCGCACCACGG
CGCTCACCACGCCCTCGCCCGACGCCGCCGCCGCCGCCGGGGCGCCGCCGCCGTCGACGT
TGGCGTCTGCGGCCGCGGCGCCCTTCTCGACGTCGGCGGCGGGGGCGCCCGAGGAGGCTG
CTACGGCGGCGCTCATGGCGCGCGCGTTCTCGGGGACGGATTCGCGGAGT

consensusID : consensus_6885#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [ACGCCAGTGCCAGCACACAGCTGCAGCGTCGTGTAGATGAAGGCGAGCACCCCGATCGCGACCACGTACCTGTACTCACTCGTAGTGCTCGAACTGCCATCACAGTCAGCCAGTGGTCAGTTGGCGCCCATGACAGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGACGCGGAGCCCGACCCGGACTTCTCCAGGAGGTCACATGCCACCAGCCAGCAGCCGCACCACGGCAGCTCACAACGCCCTCGCCACGACGCCAGCCAGCCGCCGCCGGGGCACCACCAGCCGTCGACGTTGGCGTCTCCGCCGCTTAGAGAATCCAAGCTACGTAC]

[+] EMBL BI810282             [ACGCCAGTGCCAGCACACAGCTGCAGCGTCGTGTAGATGAAGGCGAGCACCCCGATCGCGACCACGTACCTGTACTCACTCGTAGTGCTCGAACTGCCATCACAGTCAGCCAGTGGTCAGTTGGCGCCCATGACAGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGACGCGGAGCCCGACCCGGACTTCTCCAGGAGGTCACATGCCACCAGCCAGCAGCCGCACCACGGCAGCTCACAACGCCCTCGCCACGACGCCAGCCAGCCGCCGCCGGGGCACCACCAGCCGTCGACGTTGGCGTCTCCGCCGCTTAGAGAATCCAAGCTACGTAC]




>consensus_6885#2
ACGCCAGTGCCAGCACACAGCTGCAGCGTCGTGTAGATGAAGGCGAGCACCCCGATCGCG
ACCACGTACCTGTACTCACTCGTAGTGCTCGAACTGCCATCACAGTCAGCCAGTGGTCAG
TTGGCGCCCATGACAGACGAAGGCGAGGAGGGAGAAGGCCCACGCGGCGACGCGGAGCCC
GACCCGGACTTCTCCAGGAGGTCACATGCCACCAGCCAGCAGCCGCACCACGGCAGCTCA
CAACGCCCTCGCCACGACGCCAGCCAGCCGCCGCCGGGGCACCACCAGCCGTCGACGTTG
GCGTCTCCGCCGCTTAGAGAATCCAAGCTACGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6885#1      ATCATATGTAGGTCTGCTTGGCGAGCTTGAAGCCGGAGACGAGGGCGGAGAGGGCGAGAC 60
consensus_6885#2      ------------------------------------------------------------
consensus_6885#0      -----TTTTTGTTTTTTTTCTCCAATTTGTTGGATATAATCACCCCTTGAAGTACAAGTT 55
                                                                                  

consensus_6885#1      AGAGGAAGGCGAAGAAGGCCATGGTGATGGACTCCGCCGACGAGTCGGTGAACACGTTGT 120
consensus_6885#2      ------------------------------------------------------------
consensus_6885#0      TAATATTCG-GTTTGCTATTACATATATACGCCTAATTAAACACATGCAAGACAATCAAA 114
                                                                                  

consensus_6885#1      CCGCGCCTTCCCTCATCCTGTTCGCTATCCGGATCGCCGCAGACACCGCTGACATCAGCA 180
consensus_6885#2      ------------------------------------------------------------
consensus_6885#0      TCATCCAATGAAATGAATCGATCAATATCCTCCCCTAAACACGCAAATTAACCCCACCGG 174
                                                                                  

consensus_6885#1      GTTACGCCGTCACCTGATCTCCGGCGAAGTCGACGAGTACGGCGACCTTGCCCTGCAGGT 240
consensus_6885#2      ------------------------------------------------------------
consensus_6885#0      CCGATTCCAGTCCCAAATATAAACAAGAAACAAAGCCGTACGTGTACGTATGTACCACAC 234
                                                                                  

consensus_6885#1      CTTGCCCGCCGGTGAGCCGTACGCC-GTGCC-GCAC---CAGTTGCAGCGTCGTGTAGAT 295
consensus_6885#2      --------------------ACGCCAGTGCCAGCACA--CAGCTGCAGCGTCGTGTAGAT 38
consensus_6885#0      GAGTATACCACATCATCACCACCACTATGAAGAAACCAACAATCAACTAGCTGTACAAAT 294
                                          **  *  **     **   **        *  **  * **

consensus_6885#1      GAAGGCGAGCACCCCGATCGCGACC-ACGTACCTGTACTC-CTCGTAGTGCTCGAACTGC 353
consensus_6885#2      GAAGGCGAGCACCCCGATCGCGACC-ACGTACCTGTACTCACTCGTAGTGCTCGAACTGC 97
consensus_6885#0      AACAG-GATCAGAC-GACGGCGATCGACATGGATGGATCCCATCAAATCAGATGTAG-GT 351
                       *  * ** **  * **  **** * ** *   ** *  *  **  *      * *  * 

consensus_6885#1      CTCCA--GTCGCC--GTGGTC-GTTGGCGCCCATGAC-GACGAAGGCGAGGAGGGAGAAG 407
consensus_6885#2      CATCACAGTCAGCCAGTGGTCAGTTGGCGCCCATGACAGACGAAGGCGAGGAGGGAGAAG 157
consensus_6885#0      CTGCTTGGCGAGCTTGAAGCC----GGAAACGAGGGCGGA-GAGGGCGAGGCAAAGGAAG 406
                      *  *   *    *  *  * *    **   * * * * ** ** *******     ****

consensus_6885#1      GCCCACGCGGCGACGCGGAGCGCCGACCCGGACTTCTCCAGGAGGTCC--TGCCGCC-GC 464
consensus_6885#2      GCCCACGCGGCGACGCGGAGC-CCGACCCGGACTTCTCCAGGAGGTCACATGCCACCAGC 216
consensus_6885#0      GCGAAAAAGGCCATGCTGATGGACGCCGCCGACGAGTCGGTGAACACGT-TGTCCGC-GC 464
                      **  *   *** * ** **    ** * * ***   **   **   *   ** *  * **

consensus_6885#1      CAGC-GCCGCACCACGGC-GCTCACCACGCCCTCGCC--CGACGCCGCC--GCCGCCGCC 518
consensus_6885#2      CAGCAGCCGCACCACGGCAGCTCACAACGCCCTCGCCA-CGACGCCAGCCAGCCGCCGCC 275
consensus_6885#0      CTTC--CCTCATCCTGTTCGTTATCGGGATCGCCGCCGACACCGCCGAC-ATCAGCAGGT 521
                      *  *  ** ** *  *   * *  *     *  ****  *  ****  *   * ** *  

consensus_6885#1      GGGGCGCCGCC-GCCGT--CGACGTTGGCGTCTGCGG-CCGCGGCGCCCT-------TCT 567
consensus_6885#2      GGGGCACCACCAGCCGT--CGACGTTGGCGTCTCCG--CCGCTTAGAGAA-------TCC 324
consensus_6885#0      ACGCCGTCACCTGCAGTAGCACCATATGCGTATCGAAACCACGATAAAACATTAGTGTTT 581
                        * *  * ** ** **  *  * *  **** *     ** *               *  

consensus_6885#1      CGACGTCGGCGGCGGGGGCGCCCGAGGAGGCTGCTACGGCGGCGCTCATGGCGCGCGCGT 627
consensus_6885#2      AAGCTACGTAC------------------------------------------------- 335
consensus_6885#0      TAGCGTGCATTGTATATATACTAGCTTCATTTTTTAATATATAATGCACAACACGTTTAA 641
                         *                                                        

consensus_6885#1      TCTCGGGGACGGATTCGCGGAGT------------------------------------- 650
consensus_6885#2      ------------------------------------------------------------
consensus_6885#0      TCATTTATTTTATTTCAAAAATAGTTAATTATTATACATTTGTTGTGGGTTGTTTTATCG 701
                                                                                  

consensus_6885#1      ------------------------------------------------------------
consensus_6885#2      ------------------------------------------------------------
consensus_6885#0      TTAAAAATACTTTAAGCATAATTTATATATTATATATTTTTTTCAAAACTTTTGAATAAG 761
                                                                                  

consensus_6885#1      ----------------------------------
consensus_6885#2      ----------------------------------
consensus_6885#0      ATAATGGTTAAGCATGTGTTAAAAATTAACTATG 795