|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1218 fasta sequence
[CGTTTTGGTCCCCCTCCTGTTCGGCGACGGGCGACGTACGGCGCCACTATAAGAAACGTGCCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCCATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTTTTGCCGCTCTTCAGCCGATCGCCGGCCGAGGATCTTGAGGAGAAGCTGAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGGTCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGCCACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGCGGCGAGGGAGGACGCCGCACCGGCGGTCGCCGCCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGACCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCGTGCGCGCCGACGCCGCCGACGCCACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGGGCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTGCGCATTCGCGCCGTCTTGCCCCGTCAAGAAGAAGCTCCAAAGATGTGCGGAGGATAGGTCAATGCTAGTGGCGACCTACGAGGGAGAACACAACCATGCCCTGTCCACGCAGACAACCGAATTCGTCGCCAGCGGCTGCACTACGAGCCAGCACGCCGGGGGGTCGTCGTCGTCGCCGCTGCCGTGCTCCATCTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCAAGCAGGGTCCGGATCGATCGCGAGCTGCGGCGTCGAGGCGGCCGCCGTCTCCGGCGAGCTCGTCACGGTGCTCTCGCCGGAGTTGAGGAGGCACCTCGTGGAGGAGGTGGTGCAAGTGCTCAAGAACGACGCCGAGTTCGTGGAGGCCGTGACCAACGCCGTGGCCGCTAGAGTTGTGGATCAAATCCCACACATTCCTGTTCATTTGTAGTTGTTTTTTTTTTTCTCTTTGAGAACGTTGATTTGTAGTTTGTAGGCAGTATATATATCCCAAAATGCTTGCAAGTATATGTACACATGTATTCGCAAATGTGAGTATATACCTATGCCGCTTTTGCTATAAAAAAAAAGA]
[+] EMBL AK067834 [CGTTTTGGTCCCCCTCCTGTTCGGCGACGGGCGACGTACGGCGCCACTATAAGAAACGTGCCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCCATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTTTTGCCGCTCTTCAGCCGATCGCCGGCCGAGGATCTTGAGGAGAAGCTGAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGGTCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGCCACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGCGGCGAGGGAGGACGCCGCACCGGCGGTCGCCGCCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGACCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCGTGCGCGCCGACGCCGCCGACGCCACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGGGCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTGCGCATTCGCGCCGTCTTGCCCCGTCAAGAAGAAGCTCCAAAGATGTGCGGAGGATAGGTCAATGCTAGTGGCGACCTACGAGGGAGAACACAACCATGCCCTGTCCACGCAGACAACCGAATTCGTCGCCAGCGGCTGCACTACGAGCCAGCACGCCGGGGGGTCGTCGTCGTCGCCGCTGCCGTGCTCCATCTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCAAGCAGGGTCCGGATCGATCGCGAGCTGCGGCGTCGAGGCGGCCGCCGTCTCCGGCGAGCTCGTCACGGTGCTCTCGCCGGAGTTGAGGAGGCACCTCGTGGAGGAGGTGGTGCAAGTGCTCAAGAACGACGCCGAGTTCGTGGAGGCCGTGACCAACGCCGTGGCCGCTAGAGTTGTGGATCAAATCCCACACATTCCTGTTCATTTGTAGTTGTTTTTTTTTTTCTCTTTGAGAACGTTGATTTGTAGTTTGTAGGCAGTATATATATCCCAAAATGCTTGCAAGTATATGTACACATGTATTCGC ]
[-] EMBL CB673076 [ GGCGGTCGCCGCCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGACCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCGTGCGCGCCGACGCCGCCGACGCCACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGGGCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTGCGCATTCGCGCCGTCTTGCCCCGTCAAGAAGAAGCTCCAAAGATGTGCGGAGGATAGGTCAATGCTAGTGGCGACCTACGAGGGAGAACACAACCATGCCCTGTCCACGCAGACAACCGAATTCGTCGCCAGCGGCTGCACTACGAGCCAGCACGCCGGGGGGTCGTCGTCGTCGCCGCTGCCGTGCTCCATCTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCAAGCAGGGTCCGGATCGATCGCGAGCTGCGGCGTCGAGGCGGCCGCCGTCTCCGGCGAGCTCGTCACGGTGCTCTCGCCGGAGTTGAGGAGGCACCTCGTGGAGGAGGTGGTGCAAGTGCTCAAGAACGACGCCGAGTTCGTGGAGGCCGTGACCAACGCCGTGGCCGCTAGAGTTGTGGATCAAATCCCACACATTCCTGTTCATTTGTAGTTG TTTTTTTTTTCTCTTTGAGAACGTTGATTTGTAGTTTGTAGGCAGTATATATATCCCAAAATGCTTGCAAGTATATGTACACATGTATTCGCAAATGTGAGTATATACCTATGCCGCTTTTGCTATAAAAAAAAAGA]
consensusID : consensus_6886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence
[CACTATAAGAAACGTGCCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCCATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTTTTGCCGCTCTTCAGCCGATCGCCGGTCTGTCCGTCCATCGATATGATCGATCGATCTTTGCGTGTCGTCGTCAATGGCTGATTTGGATTGTTGGTTGTTAATTCGAACATGTGTGATGTGATTGCGCGTGGGTGTGGTGGCTGGGGAGTGTGTACAGGCCGAGGATCTTGAGGAGAAGCTGAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGGTCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGCCACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGCGGCGAGGGAGGACGCCGCACCGGCGGTCGCCGCCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGACCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCGTGCGCGCCGACGCCGCCGACGCCACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGGGCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTG]
[+] EMBL CB673075 [CACTATAAGAAACGTGCCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCCATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTTTTGCCGCTCTTCAGCCGATCGCCGGTCTGTCCGTCCATCGATATGATCGATCGATCTTTGCGTGTCGTCGTCAATGGCTGATTTGGATTGTTGGTTGTTAATTCGAACATGTGTGATGTGATTGCGCGTGGGTGTGGTGGCTGGGGAGTGTGTACAGGCCGAGGATCTTGAGGAGAAGCTGAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGGTCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGCCACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGCGGCGAGGGAGGACGCCGCACCGGCGGTCGCCGCCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGACCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCGTGCGCGCCGACGCCGCCGACGCCACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGGGCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTG]
consensusID : consensus_6886#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence
[GAAGGGAAAGTTTCCAAGTTTAAATTGTGCCTTGGAATTTTTGGACCCTCGGGGCTTCGTAATGGTTTATTAATGGTTAAGGCCTCCCAAAAGATGTTCCGGGAAGGTATTAGGGTCCAAATGGCTTAGTGGCCGAACCTACCGAAGGGGAGAAACAACCCCCCAATGGCCCCTTGTCCACCGCCAGACATACCCGAATTTCGTTCAGCCAGCGGTGCATACGAGCCAGCACGCCGGGGGGTCTCGTCGTCCCGCTGCCGTGCTCCATCTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCCACCAGGGTCCGGATCGATCGCGAGCTGCGGCGTCGAGGCGCCGC]
[+] EMBL BI810138 [GAAGGGAAAGTTTCCAAGTTTAAATTGTGCCTTGGAATTTTTGGACCCTCGGGGCTTCGTAATGGTTTATTAATGGTTAAGGCCTCCCAAAAGATGTTCCGGGAAGGTATTAGGGTCCAAATGGCTTAGTGGCCGAACCTACCGAAGGGGAGAAACAACCCCCCAATGGCCCCTTGTCCACCGCCAGACATACCCGAATTTCGTTCAGCCAGCGGTGCATACGAGCCAGCACGCCGGGGGGTCTCGTCGTCCCGCTGCCGTGCTCCATCTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCCACCAGGGTCCGGATCGATCGCGAGCTGCGGCGTCGAGGCGCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6886#0 CGTTTTGGTCCCCCTCCTGTTCGGCGACGGGCGACGTACGGCGCCACTATAAGAAACGTG 60
consensus_6886#1 --------------------------------------------CACTATAAGAAACGTG 16
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 CCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCC 120
consensus_6886#1 CCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCC 76
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 ATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTT 180
consensus_6886#1 ATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTT 136
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 TTGCCGCTCTTCAGCCGATCGCCGG----------------------------------- 205
consensus_6886#1 TTGCCGCTCTTCAGCCGATCGCCGGTCTGTCCGTCCATCGATATGATCGATCGATCTTTG 196
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 ------------------------------------------------------------
consensus_6886#1 CGTGTCGTCGTCAATGGCTGATTTGGATTGTTGGTTGTTAATTCGAACATGTGTGATGTG 256
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 --------------------------------------CCGAGGATCTTGAGGAGAAGCT 227
consensus_6886#1 ATTGCGCGTGGGTGTGGTGGCTGGGGAGTGTGTACAGGCCGAGGATCTTGAGGAGAAGCT 316
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 GAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGG 287
consensus_6886#1 GAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGG 376
consensus_6886#2 ---------GAAGGGAAAGTTTCCAAGTTTAAATTGTGCCTTGGA----ATTTT---TGG 44
** ** ** * * * * * ** * ** *** * **
consensus_6886#0 TCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGC 347
consensus_6886#1 TCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGC 436
consensus_6886#2 ACCCTCGGGGCTTCGTAATGGTTTATTAATG--GTTAAGGCCTCCCAAAAGATGTTCCGG 102
* * * * * * * ** * ** * * ** *****
consensus_6886#0 CACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGC-----GGCGAGGGAGGACGCCGCA 402
consensus_6886#1 CACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGC-----GGCGAGGGAGGACGCCGCA 491
consensus_6886#2 GAAGGTATTAGGGTCCAAATGGCTTAGTGGCCGAACCTACCGAAGGGGAGAAACAACCCC 162
* * * * * * * * * ** * * * * ** ** * *
consensus_6886#0 CCGGCGGTCGCCG--CCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGA 460
consensus_6886#1 CCGGCGGTCGCCG--CCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGA 549
consensus_6886#2 CCAATGGCCCCTTGTCCACCGCCAGACATACCCGAATTTCGTTCAGCCAGCGGTG--CAT 220
** ** * * ** ***** ** * * *** ** **** * *
consensus_6886#0 CCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCG--TGCGCGCCGACGCCGCCGACGC 518
consensus_6886#1 CCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCG--TGCGCGCCGACGCCGCCGACGC 607
consensus_6886#2 ACGAGCCAGCACGCCGGGGGGTCTCGTCGTCCCGCTGCCGTGCTCCATCTCCATCAACTC 280
** * **** * **** * ** **** * ** ** * ** * ** *
consensus_6886#0 CACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGG 578
consensus_6886#1 CACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGG 667
consensus_6886#2 GTCGGGCCGCACGATCACACTCGA---CCTGACGAAC--CCACCAGGGTCCGGAT--CGA 333
* * * ** * ** ** * *** * * **** * * * **
consensus_6886#0 GCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTGCGCATTCGCGCC 638
consensus_6886#1 GCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTG------------ 715
consensus_6886#2 TCGCGAGCTGCGGCGTCGAGGCGCCGC--------------------------------- 360
* ** ** **** * **
consensus_6886#0 GTCTTGCCCCGTCAAGAAGAAGCTCCAAAGATGTGCGGAGGATAGGTCAATGCTAGTGGC 698
consensus_6886#1 ------------------------------------------------------------
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 GACCTACGAGGGAGAACACAACCATGCCCTGTCCACGCAGACAACCGAATTCGTCGCCAG 758
consensus_6886#1 ------------------------------------------------------------
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 CGGCTGCACTACGAGCCAGCACGCCGGGGGGTCGTCGTCGTCGCCGCTGCCGTGCTCCAT 818
consensus_6886#1 ------------------------------------------------------------
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 CTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCAAGCAGGGTCCGG 878
consensus_6886#1 ------------------------------------------------------------
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 ATCGATCGCGAGCTGCGGCGTCGAGGCGGCCGCCGTCTCCGGCGAGCTCGTCACGGTGCT 938
consensus_6886#1 ------------------------------------------------------------
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 CTCGCCGGAGTTGAGGAGGCACCTCGTGGAGGAGGTGGTGCAAGTGCTCAAGAACGACGC 998
consensus_6886#1 ------------------------------------------------------------
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 CGAGTTCGTGGAGGCCGTGACCAACGCCGTGGCCGCTAGAGTTGTGGATCAAATCCCACA 1058
consensus_6886#1 ------------------------------------------------------------
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 CATTCCTGTTCATTTGTAGTTGTTTTTTTTTTTCTCTTTGAGAACGTTGATTTGTAGTTT 1118
consensus_6886#1 ------------------------------------------------------------
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 GTAGGCAGTATATATATCCCAAAATGCTTGCAAGTATATGTACACATGTATTCGCAAATG 1178
consensus_6886#1 ------------------------------------------------------------
consensus_6886#2 ------------------------------------------------------------
consensus_6886#0 TGAGTATATACCTATGCCGCTTTTGCTATAAAAAAAAAGA 1218
consensus_6886#1 ----------------------------------------
consensus_6886#2 ----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||