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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1528 fasta sequence
[AGAGAGGTGAAAACTGGAGAGAAACTCCCAAGCAACTCCCAAAGTCTCAATCTGCTCAACGGACATGTTCCAATGATTCACTTGTTCGTTATTAATTGTTACATTTTCTTTGTTTATATATACGCACATGTAAGGATGCAGGAAGACGATCGATCAAGGTTCACCTCGGAAAAGAAAAAAGAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAACGTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGAGCTGCTCCGCCGTCGTGCCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTGGCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCACCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGTCCCCATCTGGGCCGTCCCGATCGTCGCTGTCATTGGGCCCATGATTGTCTTCGCCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCTCGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGTCTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCCGGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAGGGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAGGGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTACAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGGCCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATACTGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCTATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTTCTCCCAAGAATGGCACGGGGTCAGATCAAGCTCTGTGTTAAGGCCTGAACTGGCCCATCCTATTTGGGCTTGAATTCAAGAAATCATTGTGAAAAGAAATAAGTCTAT]
[+] EMBL AK070670 [AGAGAGGTGAAAACTGGAGAGAAACTCCCAAGCAACTCCCAAAGTCTCAATCTGCTCAACGGACATGTTCCAATGATTCACTTGTTCGTTATTAATTGTTACATTTTCTTTGTTTATATATACGCACATGTAAGGATGCAGGAAGACGATCGATCAAGGTTCACCTCGGAAAAGAAAAAAGAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAACGTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGAGCTGCTCCGCCGTCGTGCCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTGGCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCACCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGTCCCCATCTGGGCCGTCCCGATCGTCGCTGTCATTGGGCCCATGATTGTCTTCGCCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCTCGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGTCTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCCGGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAGGGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAGGGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTACAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGGCCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATACTGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCTATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTTCTCCCAAGAATGGCACGGGGTCAGATCAAGCTCTGTGTTAAGGCCTGAACTGGCCCATCCTATTTGGGCTTGAATTCAAGAAATCATTGTGAAAAGAAATAAGTCTAT]
[+] EMBL OSR24121A [ GGAAAAGAAAAAAGAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAACGTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGA CTGCTCCGCCGTCGTGCCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTGGCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCACCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGTCCCCA ]
[+] EMBL AU032462 [ AAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCTCGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGTCTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCCGGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAGGGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAGGGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTACAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGGCCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATACTGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCTATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTaaaaaaaaa ]
consensusID : consensus_6894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[CCGCTCGTCCTAAATGGCGCAGATCGTCGCTGTCATTGGGNCCATGATTGTNTTCACCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCAC]
[+] EMBL OSS10523A [CCGCTCGTCCTAAATGGCGCAGATCGTCGCTGTCATTGGGNCCATGATTGTNTTCACCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6894#0 AGAGAGGTGAAAACTGGAGAGAAACTCCCAAGCAACTCCCAAAGTCTCAATCTGCTCAAC 60
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 GGACATGTTCCAATGATTCACTTGTTCGTTATTAATTGTTACATTTTCTTTGTTTATATA 120
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 TACGCACATGTAAGGATGCAGGAAGACGATCGATCAAGGTTCACCTCGGAAAAGAAAAAA 180
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 GAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAAC 240
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 GTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGAGCTGCTCCGCCGTCGTG 300
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 CCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTG 360
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 GCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCA 420
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 CCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGT 480
consensus_6894#1 --------------------------------------------------------CCG- 3
***
consensus_6894#0 CCCCATCTGGGCCGTCCCGATCGTCGCTGTCATTGGGCCCATGATTGTCTTCGCCGTCGT 540
consensus_6894#1 CTCGTCCTAAATGGCGCAGATCGTCGCTGTCATTGGGNCCATGATTGTNTTCACCGTCGT 63
* * ** * * ******************* ********** *** *******
consensus_6894#0 CTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTC 600
consensus_6894#1 CTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTC 123
************************************************************
consensus_6894#0 GGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCC 660
consensus_6894#1 GGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCC 183
************************************************************
consensus_6894#0 GAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGG 720
consensus_6894#1 GAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGG 243
************************************************************
consensus_6894#0 AGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGG 780
consensus_6894#1 AGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGG 303
************************************************************
consensus_6894#0 CCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGAT 840
consensus_6894#1 CCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGAT 363
************************************************************
consensus_6894#0 CACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCT 900
consensus_6894#1 CAC--------------------------------------------------------- 366
***
consensus_6894#0 CGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGT 960
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 CTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCC 1020
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 GGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAG 1080
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 GGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAG 1140
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 GGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTA 1200
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 CAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGG 1260
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 CCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATAC 1320
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 TGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCT 1380
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 ATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTTCTCCCAAGAATGGCACGGGG 1440
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 TCAGATCAAGCTCTGTGTTAAGGCCTGAACTGGCCCATCCTATTTGGGCTTGAATTCAAG 1500
consensus_6894#1 ------------------------------------------------------------
consensus_6894#0 AAATCATTGTGAAAAGAAATAAGTCTAT 1528
consensus_6894#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||