|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1466 fasta sequence
[CTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATGGCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCGTAAGCATCTCGCCGCAGTGCTCATCTCCTCCTCCTCCTCCTCCTGAGTCCTCCTGACTGATACTATACTCTAGTTATGCTTATGCGAAAGCACTGGGGGAAAGATTCTTTCAGAATTTTGTGTCAAGATGGATTAAGGGGTAAAAGGAATAACAATACACGTACTCCAACTGGGTTGGTGACTTGAGTTCATGGCAGGAGAATAAAGACTTGATTTTTGGTGCTTGTTTGATGGGAATACCGCAGATTTGCGATATCACCGTCAGCGAGTTTAATTGGGAATAAAGACGGTTTTGTATTAGCTTTGTGCTTTGAGCATACCAGTGTTTTGCATCTGAAACTTGTAAAAGCTGATAATGAGGACGAATATTTTACAGAACTTTAGATCAATCAATATGAAAAACCTGCGATTTGAAATAGAGATAGCTGGACAAGGACTTGTGATTATCTGCCATGCTTATCTTTCTGATATCCGGAAATCCTGCTGGATGCCTGGATAGACAGTACAAAGGACAATAATGTGTATTTATGCCTTGGTATCTGAATAATGAGTAGTTACTACATTAGTGTGGGAAGTATGAACTGCAGATCCAGTTCCTATGCTTACAGATATGGTGCACATGTGAATGCTCGCTGTTAAATGATTAAATTTACTTGAGGAAGACAAGGCATACTTAATTACTTATCATGTGATATGCAGATCCAAGTTGTTAGGATACAGTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATTACTTAATTTCATTGTGAATGGAGGTATTTGTTCAATTTCACTTGTAGTACAAGTTACATGCTCAACTCCCTTTGTGCTTTTGAGTTTAATGTGATTTCAATCTGCAGCGAGGTGTTCTATCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGGTCTGGACATCTTTGCTATTTTCTGTCTTGTAATTGTTATGTTTCACCCAATTGGCCAGAGTTATATTCTTCATTCATTTTTATTCCAGATCTTTCAGCATGTTATTCTTGATCTTCCGGGGCTTGCATTCTTCACAACGTATGCAATGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATACAGGTAAAGCAAGTTATCTCTAAAAGTCTGTATTGATTAGTGATTGCTATTTATCAGATTTTGTATAATTCCGTTAGCATTGCAATAATCAATAGTAC]
[+] EMBL AK070960 [CTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATGGCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCGTAAGCATCTCGCCGCAGTGCTCATCTCCTCCTCCTCCTCCTCCTGAGTCCTCCTGACTGATACTATACTCTAGTTATGCTTATGCGAAAGCACTGGGGGAAAGATTCTTTCAGAATTTTGTGTCAAGATGGATTAAGGGGTAAAAGGAATAACAATACACGTACTCCAACTGGGTTGGTGACTTGAGTTCATGGCAGGAGAATAAAGACTTGATTTTTGGTGCTTGTTTGATGGGAATACCGCAGATTTGCGATATCACCGTCAGCGAGTTTAATTGGGAATAAAGACGGTTTTGTATTAGCTTTGTGCTTTGAGCATACCAGTGTTTTGCATCTGAAACTTGTAAAAGCTGATAATGAGGACGAATATTTTACAGAACTTTAGATCAATCAATATGAAAAACCTGCGATTTGAAATAGAGATAGCTGGACAAGGACTTGTGATTATCTGCCATGCTTATCTTTCTGATATCCGGAAATCCTGCTGGATGCCTGGATAGACAGTACAAAGGACAATAATGTGTATTTATGCCTTGGTATCTGAATAATGAGTAGTTACTACATTAGTGTGGGAAGTATGAACTGCAGATCCAGTTCCTATGCTTACAGATATGGTGCACATGTGAATGCTCGCTGTTAAATGATTAAATTTACTTGAGGAAGACAAGGCATACTTAATTACTTATCATGTGATATGCAGATCCAAGTTGTTAGGATACAGTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATTACTTAATTTCATTGTGAATGGAGGTATTTGTTCAATTTCACTTGTAGTACAAGTTACATGCTCAACTCCCTTTGTGCTTTTGAGTTTAATGTGATTTCAATCTGCAGCGAGGTGTTCTATCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGGTCTGGACATCTTTGCTATTTTCTGTCTTGTAATTGTTATGTTTCACCCAATTGGCCAGAGTTATATTCTTCATTCATTTTTATTCCAGATCTTTCAGCATGTTATTCTTGATCTTCCGGGGCTTGCATTCTTCACAACGTATGCAATGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATACAGGTAAAGCAAGTTATCTCTAAAAGTCTGTATTGATTAGTGATTGCTATTTATCAGATTTTGTATAATTCCGTTAGCATTGCAATAATCAATAGTAC]
consensusID : consensus_6902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1246 fasta sequence
[GAGCCGTCCATATAAATCCACGCCGTCGCCGCCGAATCTCGCGAAAAAGCTCGCAAATTTCTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATGGCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCATCCAAGTTGTTAGGATACA-GTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATT-ACTTAA-TTTCATTGTGAATGGAGCGAGGCGTTCTATCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGATCTTTCAGCATGTTATTCTTGATCTTCCGGGGCTTGCATTCTTCACAACGTATGCAATGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATACAGGTTCTGCTGTGGGCGTTGTTGTGGCACAATCCAAACCCATCTATGATAGTCCTTTCGAAGTTGTTCATTGCAGGCCTATCCTTTTCTGCAGCCTTGGGTTTTCTGCTATATGGAGGGAGGCTTTTCTTCATGCTGAAGCGTTTTCCTATTGAGTCAAAAGGGAGGCAGAAAAAACTGAGGGAAGTTGGGAGAGTTGCCACTATATGCTTCCTTTGTTTCTTGGCACGATGCATTATGATGTGCTTTGATGCATTTGACAAAAAAGCTGACCTTGATGTGCTT-GACCATCCAATTCTTAATTTCATCTATTACCTGATC-GTTGAAATTCTTCCTTCATCTCTTGTCCTGTTTATTCTGAGGAGAATCCCTTCGAAGCTACGGCTCGCCCAGTATCATCCCCTCAACAGTGGCTAGGGGATGAAAACGGATGAAAACATGAAAGCTAAAAATATGGAGAGGCCTGCAAAGTGACACGGCTGCAAGCCCAGGACATGAAAAAAAAGGATGACCCATGGTCTAAAATCTCTAACCCTTGTTCAAAATGTGTATAGATAGGGATCTGAAATCTGAAGTTTTCCCACAACCTTCACCTCCTGTAGCTAACCTTGGTGGTTCAAGGTGCTGATGATTTCGTGTAACCAATTGTTCCTTTGTAACAATGGAAGCAAGTGTCCTCGCTCTTTTGAGC]
[+] EMBL AK070614 [GAGCCGTCCATATAAATCCACGCCGTCGCCGCCGAATCTCGCGAAAAAGCTCGCAAATTTCTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATGGCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCATCCAAGTTGTTAGGATACA GTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATT ACTTAA TTTCATTGTGAATGGAGCGAGGCGTTCTATCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGATCTTTCAGCATGTTATTCTTGATCTTCCGGGGCTTGCATTCTTCACAACGTATGCAATGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATACAGGTTCTGCTGTGGGCGTTGTTGTGGCACAATCCAAACCCATCTATGATAGTCCTTTCGAAGTTGTTCATTGCAGGCCTATCCTTTTCTGCAGCCTTGGGTTTTCTGCTATATGGAGGGAGGCTTTTCTTCATGCTGAAGCGTTTTCCTATTGAGTCAAAAGGGAGGCAGAAAAAACTGAGGGAAGTTGGGAGAGTTGCCACTATATGCTTCCTTTGTTTCTTGGCACGATGCATTATGATGTGCTTTGATGCATTTGACAAAAAAGCTGACCTTGATGTGCTT GACCATCCAATTCTTAATTTCATCTATTACCTGATC GTTGAAATTCTTCCTTCATCTCTTGTCCTGTTTATTCTGAGGAGAATCCCTTCGAAGCTACGGCTCGCCCAGTATCATCCCCTCAACAGTGGCTAGGGGATGAAAACGGATGAAAACATGAAAGCTAAAAATATGGAGAGGCCTGCAAAGTGACACGGCTGCAAGCCCAGGACATGAAAAAAAAGGATGACCCATGGTCTAAAATCTCTAACCCTTGTTCAAAATGTGTATAGATAGGGATCTGAAATCTGAAGTTTTCCCACAACCTTCACCTCCTGTAGCTAACCTTGGTGGTTCAAGGTGCTGATGATTTCGTGTAACCAATTGTTCCTTTGTAACAATGGAAGCAAGTGTCCTCGCTCTTTTGAGC]
[-] EMBL BI809087 [ GCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCATCCAAGTTGTTAGGATACA GTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATTCACTTAACTTTCATTG ]
[+] EMBL CA766137 [ GGGATCTCGTGAACGGCTCGACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCATCCTCCTTCATCCAAGTTGTTAGGATACANGTACAGAGTTCCTGAATACGGATGGACAACACAAAAGGTCTTTCAATT ACTTAA TTTCATTGTGAATGGAGCGAGGTGTTCTATCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGATCTTTCAGCATGTTATTCTTGATCTTCCGGGGCTTGCATTCTTCACAACGTATGCAATGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATACAGGTTCTGCTGTGGGCGTTGTTGTGGCACAATCCAAACCCATCTATGATAGTCCTTTCGAAGTTGTTCATTGCAGGCCTATCCTTTTCTGCAGCCTTGGGTTTTCTGCTATATGGAGGGAGGCTTTTCTTCATGCTGAAGCGTTTTCCTATTGAGTCAAAAGGGAGGCAGAAAAAACTGAGGGAAGTTGGGAGAGTTGCCACTATATGCTTCCTTTGNTTCTTGGCACGATGCATTATGATGTGCTTTGATGCATTTGACAAAAAAGCTGACCTTGATGTGCTTGGACCATCCAATTCTTAATTTCATCTATTACCTGATCGGTGGAAATTCTTCCNTCATCTCTTGGCCTGGTTAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6902#0 ------------------------------------------------------------
consensus_6902#1 GAGCCGTCCATATAAATCCACGCCGTCGCCGCCGAATCTCGCGAAAAAGCTCGCAAATTT 60
consensus_6902#0 CTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATG 60
consensus_6902#1 CTACTCGGGGAAGAAGAAGAGCCCTCTCCAAAGGATCTCCTCGCCCGGCCGGCGGCGATG 120
************************************************************
consensus_6902#0 GCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCG 120
consensus_6902#1 GCGGCCGCGGCGCCGATGCCGGTTGCCGGAGCGGGGTGGTGGGATCTCGTGAACGGCTCG 180
************************************************************
consensus_6902#0 ACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCA 180
consensus_6902#1 ACGGCGTGGCAGGACGGGATCTTCCTCTCCCTCGCCGCTCTCTACGGCCTCGTCGCCGCA 240
************************************************************
consensus_6902#0 TCCTCCTTCGTAAGCATCTCGCCGCAGTGCTCATCTCCTCCTCCTCCTCCTCCTGAGTCC 240
consensus_6902#1 TCCTCCTTCATC--CAAGTTGTTAGGATACA-GTACAGAGTTCCTGAATATGGATGGACA 297
********* * ** * * * * * **** * * *
consensus_6902#0 TCCTGACTGATACTATACTCTAGTTATGCTTATGCGAAAGCACTGGGGGAAAGATTCTTT 300
consensus_6902#1 ACACAAAAGGTCTTTCAATTACTTAATTTCATTGTGAATGGAGCGAGGCGTTCTATCTTT 357
* * * * * * * * ** ** *** * * * ** *****
consensus_6902#0 CAGAATTTTGTGTCAAGATGGATTAAGGGGTAAAAGGAA-TAACAATACACGTACTCCAA 359
consensus_6902#1 -GCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGATCTTTCAGCATGT-TATTCTTG 415
* * * **** * * * ** * ** * ** **
consensus_6902#0 CTGGGTTGGTGACTTGAGTTCATGGCAGGAGAATAAAGACTTGATTTTTGGTGCTTGTTT 419
consensus_6902#1 ATCTTCCGG-GGCTTGCATTCTTCACAACGTA--------TGCAATGTTGGCACTTTTCT 466
* ** * **** *** * ** * * * * **** *** * *
consensus_6902#0 GATGGGAATACCGCAGATTTGCGATATCACCGTCAGCGAGTTTAATTGGGAATAAAGACG 479
consensus_6902#1 ---------------GGGCTGAGATATCTTATCAAGCACGTGGTCTAGAGACTGAAG--- 508
* ** ****** *** ** * * ** * ***
consensus_6902#0 GTTTTGTATTAGCTTTGTGCTTTGAGCATACCAGTGTTTTGCATCTGAAACTTGTAAAAG 539
consensus_6902#1 GGCTTAGATCAGGTTTCTACACTAT---TAATGGTGTAATATATGTGATAC-------AG 558
* ** ** ** *** * * * ** **** * ** *** ** **
consensus_6902#0 CTGATAATGAGGACGAATATTTTACAGAACTTTAGATCAATCAATATGAAAAACCTGCGA 599
consensus_6902#1 GTTCTGCTGTGGGCGT-TGTTGTGGCACAATCCAAACCCATC--TATGATAGTCCT---- 611
* * ** ** ** * ** * * * * * * *** ***** * ***
consensus_6902#0 TTTGAAATAGAGATAGCTGGACAAGGACTTGTGATTATCTGCCATGCTTATCTTTCTGAT 659
consensus_6902#1 TTCGAAG------TTGTTCATTGCAGGCCTATCCTTTTCTGCAGCCTTGGGTTTTCTGCT 665
** *** * * * * * * * ** ***** * ****** *
consensus_6902#0 ATCCGGAAATCCTGCTGGATGCCTGGATAGACAGTACAAAGGACAATAATGTGTATTTAT 719
consensus_6902#1 ATATGGAG--------GGAGGCTTTTCTTCATGCTGAA------------GCGTTTTCCT 705
** *** *** ** * * * * * * ** ** *
consensus_6902#0 GCCTTGGTATCTGAATAATGAGTAGTTACTACATTAGTGTGGGAAGTATGAACTGCAGAT 779
consensus_6902#1 ATTGAGTCAAAAGGGAGGCAGAAAAAACTGAGGGAAGTTGGGAGAGTTGCCACT----AT 761
* * * * * *** ** *** *** **
consensus_6902#0 CCAGTTCCTATGCTTACAGATATGGTGCACATGTGAATGCTCGCTGTTAAATGATTAAAT 839
consensus_6902#1 ATGCTTCCTTTGTTTCTTGGCACGATGCAT--------------TATGATGTGCTTTGAT 807
***** ** ** * * * **** * * * ** ** **
consensus_6902#0 TTACTTGAGGAAGACAAGGCATACTTAAT-TACTTATCATGTGATATGCAGATCCAAGTT 898
consensus_6902#1 GCATTTGACAAAAA--AGCTGACCTTGATGTGCTTGAC------CATCCAATTCTTAATT 859
* **** ** * ** *** ** * *** * ** ** ** * **
consensus_6902#0 GTTAGGATACAGTACAGAGTTCCTGAATATGGATGGACAACACAAAAGGTCTTTCAATTA 958
consensus_6902#1 TC----ATCTATTACCTGATCGTTGAAATTCTTCCTTCATCTCTTGTCCTGTTTATTCTG 915
** * *** * **** * ** * * * *** *
consensus_6902#0 CTTAATTTCATTGTGAATGGAGGTATTTGTTCAATTTCA--CTTGTAGTACAAGTTACAT 1016
consensus_6902#1 AGGAGAATCCCTTCGAAGCTACG-GCTCGCCCAGTATCATCCCCTCAACAGTGGCTAGGG 974
* ** * *** * * * * ** * *** * * * * **
consensus_6902#0 GCTCAACTCCCTTTGTGCTTTTGAGTTTAATGTGATTTCAATCTGCAGCGAGGTGTTCTA 1076
consensus_6902#1 GATGAAAACGGATGAAAACATGAAAGCTAAAAATATGGAGAGGC-CTGCAAAGTGAC--A 1031
* * ** * * * * *** ** * * ** * *** *
consensus_6902#0 TCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGGTCTGGACATCTTTGCTAT 1136
consensus_6902#1 CGGCTGCAAGCCCAGGACATGAAAAAAAAGGATGACCCATGGTCTAAAATCTCTAACCCT 1091
**** ** * ** * ** *** ** ***** * * * *
consensus_6902#0 TTTCTGTCTTGTA-ATTGTTATGTTTC----ACCCAATTGGCCAGAGTTATATTCTTCAT 1191
consensus_6902#1 TGTTCAAAATGTGTATAGATAGGGATCTGAAATCTGAAGTTTTCCCACAACCTTCACCTC 1151
* * *** ** * ** * ** * * * * *** *
consensus_6902#0 TCATTTTTATTCCAGATCTTTCAGCATGTTATT--CTTGATCTTCCGGGGCTTGCATTCT 1249
consensus_6902#1 CTGTAGCTAACCTTGGTGGTTCAAGGTGCTGATGATTTCGTGTAACCAATTGTTCCTTTG 1211
* ** * * * **** ** * * ** * * * * * **
consensus_6902#0 TCACAACGTATGCAA-TGTTGGCACTTTTCTGGGCTGAGATATCTTATCAAGCACGTGGT 1308
consensus_6902#1 TAACAATGGAAGCAAGTGTCCTCGCTCTTTTGAGC------------------------- 1246
* **** * * **** *** * ** ** ** **
consensus_6902#0 CTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATA 1368
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 CAGGTAAAGCAAGTTATCTCTAAAAGTCTGTATTGATTAGTGATTGCTATTTATCAGATT 1428
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 TTGTATAATTCCGTTAGCATTGCAATAATCAATAGTAC 1466
consensus_6902#1 --------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||