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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 669 fasta sequence
[TTTTTTTTTTGGAGTACAATATTAGTGCAATTTTATTTCATAATGCCAGATTGTAGCAAAATATTTGAATTAATAACATTGTTATATTTACAAAAATAATTAGATACTACATCTATGATTTGCTAGGTTACAGGCTAACCATTTTCCTCAGCTGGAAATTGGAATAATTTCCCCATAATAAGTTGGAAACACTAACTAATACCGAAGATATCTTCATCTTAGAGTAAGCGTGCCATGGGTTTCTAACTTACACAA-TCCATCCTTAGT-TACTTTATGGAGGCCAATGCTGATCTTTGAAGGCTTTTATACACTCCATA-GTGGATTGGATGCTGCTTGACACGCCCTTCCCCAACT-TGGGCAGGTTAACGCCTCCTGAAA-TCTGAGGGTTTT-CATGAA-AG-TTTAGGAGCCTTTGTCGAGATTCTTTCCTCACAG-CCGCTACCTGGCTCGCATAACTGATGGGATCCAGACAAGCCTCTGATGATGGTCAAGGTGTTTAAACCTACTGAATCCAAAGGATATGCTTGCAAACCTACAACAGGAGAAATCNGTTTTCCAAATGGAAATGTNTTGGNCCCTGCATATAANTACTAGGTGGTACTGGAGAGAAAATAACANTATTTNATAAGATNTTTGCGACGCATTCGCCTGNTTAGGCNGCTACCTTGAGTA]
[-] EMBL BM418956 [TTTTTTTTTTGGAGTACAATATTAGTGCAATTTTATTTCATAATGCCAGATGGTAGCAAAATA TTGAATTAATAACATGGTTATATTTACAAAAATAATTAGATACTA ATCTATGA TTG TAGGTTACAGGCTAACCATTNTCCTCAGCTGGAAATGGGAATAATTTCCCCATAATAAGTTGGAAACACTAACTAATACCGAAGATATCTTCATCTTAGAGTAAGCGTGCCAGGGGTTTCTAACTTACACAAGTCCATCCTTAGTNTACTTTATGGAGGCCAANGCTGATCTTTGAAGGCTTTTATACANTCCATAGGTGGA TGGATGCTGCTTGACACGCCCTTCCCCAACTGTGGGCAGGTTAACGCCTCCTGAAAGTCTGAGGGTTTT CATGAAGAG TTTAGGAGCCTTGGTCGAGATTCTTTCCTCACAG CG TA CTGGCTCGCATAACTGATGGGATCCAGACAAGCCTCTGATGATGGTCA ]
[-] EMBL AU174652 [ TTTTTTTTTAGAGTACAATATTAGTGCAATTTTATTTCATAATGCCAGATTGTAGCAAAATATTTGAATTAATAACATTGTTATATTTACAAAAATAATTAGATACTACATCTATGATTTGCTAGGTTACAGGCTAACCATTTTCCTCAGCTGGAAATTGGAATAATTTCCCCATAATAAGTTGGAAACACTAACTAATACCGAAGATATCTTCATCTTAGAGTAAGCGTGCCATGGGTTTCTAACTTACACAA TCCATCCTTAGT TACTTTATGGAGGCCAATGCTGATCTTTGAAGGCTTTTATACACTCCATA GTGGATTGGATGCTGCTTGACACGCCCTTCCCCAACT TGGGCAGGTTAACGCCTCCTGAAA TCTGAGGGTTTT CATGAA AG TTTAGGAGCCTTTGTCGAGATTCTTTCCTCACAG CCGCTACCTGGCTCGCATAACTGAT ]
[+] EMBL BE229083 [ TGCCAGATTGTAGCAAAATATTTGAATTAATAACATTGTTATATTTACAAAAATAATTAGATACTACATCTATGATTTGCTAGGTTACAGGCTAACCATTTTCCTCAGCTGGAAATTGGAATAATTTCCCCATAATAAGTTGGAAACACTAACTAATACCGAAGATATCTTCATCTTAGAGTAAGCGTGCCATGGGTTTCTAACTTACACAA TCCATCCTTAGT TACTTTATGGAGGCCAATGCTGATCTTTGAAGGCTTTTATACACTCCATA GTGGATTGGATGCTGCTTGACACGCCCTTCCCCAACT TGGGCA GTTAACGCCTCCTGAAA TCTGAAGGTTTTCCATGAA AGTTTTAAGA CCTTTGTCGAGA TCCTTCCTCACAGCCCGCTACCT GCTCGCATAACTGATGCTCCCCAAACCA CCTCTGAAGATGGTAAAGGTGTTTAAACCTACTGAATCCAAAGGATATGCTTGCAAACCTACAACAGGAGAAATCNGTTTTCCAAATGGAAATGTNTTGGNCCCTGCATATAANTACTAGGTGGTACTGGAGAGAAAATAACANTATTTNATAAGATNTTTGCGACGCATTCGCCTGNTTAGGCNGCTACCTTGAGTA]
consensusID : consensus_6903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence
[TGCTGATCTTTGAAGGCTTTTATACACTCCATAGTGGATTGGATGCTGCTTGACACGCCCTTCCCCAACTTGGGCAGGTTAACGCCTCCTGAAATCTGAGGGTTTTCATGAAAGTTTAGGAGCCTTTGTCGAGATTCTTTCCTCACAGCCGCTACCTGGCTCGCATAACTGATGGCATCCCAGACCAAGCCTCTGATGATGGTAAAGGTGTAAAACCTAGCTGATTCGAAAGGGATATTGCTTGCGAAACCGCTGTGGTACTGGTTCCTGATGAGGCCGTGCTGCGGCAAGCCGACGCCGACGCCGGCGAGCGTGACGCCGACGCTGAACCCGACGCCGCAGCCGCCACCTCCACAACCCCCAAACCAAACAACAACAAAAAAAAAGT]
[-] EMBL AU174653 [TGCTGATCTTTGAAGGCTTTTATACACTCCATAGTGGATTGGATGCTGCTTGACACGCCCTTCCCCAACTTGGGCAGGTTAACGCCTCCTGAAATCTGAGGGTTTTCATGAAAGTTTAGGAGCCTTTGTCGAGATTCTTTCCTCACAGCCGCTACCTGGCTCGCATAACTGATGGCATCCCAGACCAAGCCTCTGATGATGGTAAAGGTGTAAAACCTAGCTGATTCGAAAGGGATATTGCTTGCGAAACCGCTGTGGTACTGGTTCCTGATGAGGCCGTGCTGCGGCAAGCCGACGCCGACGCCGGCGAGCGTGACGCCGACGCTGAACCCGACGCCGCAGCCGCCACCTCCACAACCCCCAAACCAAACAACAACAAAAAAAAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6903#0 TTTTTTTTTTGGAGTACAATATTAGTGCAATTTTATTTCATAATGCCAGATTGTAGCAAA 60
consensus_6903#1 ------------------------------------------------------------
consensus_6903#0 ATATTTGAATTAATAACATTGTTATATTTACAAAAATAATTAGATACTACATCTATGATT 120
consensus_6903#1 ------------------------------------------------------------
consensus_6903#0 TGCTAGGTTACAGGCTAACCATTTTCCTCAGCTGGAAATTGGAATAATTTCCCCATAATA 180
consensus_6903#1 ------------------------------------------------------------
consensus_6903#0 AGTTGGAAACACTAACTAATACCGAAGATATCTTCATCTTAGAGTAAGCGTGCCATGGGT 240
consensus_6903#1 ------------------------------------------------------------
consensus_6903#0 TTCTAACTTACACAATCCATCCTTAGTTACTTTATGGAGGCCAATGCTGATCTTTGAAGG 300
consensus_6903#1 --------------------------------------------TGCTGATCTTTGAAGG 16
****************
consensus_6903#0 CTTTTATACACTCCATAGTGGATTGGATGCTGCTTGACACGCCCTTCCCCAACTTGGGCA 360
consensus_6903#1 CTTTTATACACTCCATAGTGGATTGGATGCTGCTTGACACGCCCTTCCCCAACTTGGGCA 76
************************************************************
consensus_6903#0 GGTTAACGCCTCCTGAAATCTGAGGGTTTTCATGAAAGTTTAGGAGCCTTTGTCGAGATT 420
consensus_6903#1 GGTTAACGCCTCCTGAAATCTGAGGGTTTTCATGAAAGTTTAGGAGCCTTTGTCGAGATT 136
************************************************************
consensus_6903#0 CTTTCCTCACAGCCGCTACCTGGCTCGCATAACTGATGGGATCC-AGAC-AAGCCTCTGA 478
consensus_6903#1 CTTTCCTCACAGCCGCTACCTGGCTCGCATAACTGATGGCATCCCAGACCAAGCCTCTGA 196
*************************************** **** **** **********
consensus_6903#0 TGATGGTCAAGGTGTTTAAACCTACTGAATCCAAAGG-ATAT-GCTTGCAAACCTACAAC 536
consensus_6903#1 TGATGGTAAAGGTGTAAAACCTAGCTGATTCGAAAGGGATATTGCTTGCGAAACCGC--- 253
******* ******* ** * **** ** ***** **** ****** ** * *
consensus_6903#0 AGGAGAAATCNGTTTTCCAAATGGAAATGTNTTGGNCCCTGCATATAANTACTAGGTGGT 596
consensus_6903#1 -TGTGGTACTGGTTCCTGATGAGGCCGTGCTGCGGCAAGCCGACGCCGACGCCGGCGAGC 312
* * * *** * ** ** ** * * * *
consensus_6903#0 ACTGGAGAGAAAATAACANTATTTNATAAGATNTTTGCGACGCATTCGCCTGNTTAGGCN 656
consensus_6903#1 GTGACGCCGACGCTGAACCCGACGCCGCAGCCGCCACCTCCACAACCCCCAAACCAAACA 372
** * * ** * * ** * ** * *
consensus_6903#0 GCTACCTTGAGTA--- 669
consensus_6903#1 ACAACAAAAAAAAAGT 388
* ** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||