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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1273 fasta sequence
[CGGAGAGGGGCGAGAGGGACAGGTTGGACGAGCTCCGGCGGGACTACCGCGATGTGCTCAAGGTGAAGGGTTTGCCCCCTCTGGTTTCCCTTGCCCTTTGCGGCGCGGTTTCGCCGATGAATCTCCTTGTTCACCTCCTTGTCTGAACTACTAATTCGCTGCGGTTGCAATTTTGTATTGCATATGATATCTCCTAGTACTCTGCTCCGCTTGATTGCAGGAGTCCAGGGGTTGATTGCATAGCTGATGTCAGTGCGAAACTAGGGTTGATTGCATAGCTGATGTTAGTGTGAAACTAGGATTGATTGCATAGCTGATGTTAGTGCGAAACTAGGGCTGTCAAGAATTGGTTATGGTTGTAGCATGGGATGATGACATGGTCACATTGATACTGCATATATACACTTGCACTACATTGGACTTGAATCTGATAGCGGTTCTTGATGCAGGATAATGAGATGAAGAGGAGGAAGCTAGAGAGCATAAACAAGCGAAAGCTCGTCCTGCTTTCTGAAGTCAAGTTCTTACAAAAGAAGTTAAATTCTTTCAAGAAGAATGATTCGCAGCAAGTACGGCTGAAGAAGAAAGCTCCGCGAGTCCCATCTCATGTGGGAATCAATGATGCTTCAGCTTTTTATGGGGCGAGTACTGAAGTGCCATCTACCAGTAAAAGAACAGATTTAGATTTAAATCAAGATTCTGCAATGAATGATGAGCTTTCTGATTTCCCGGGGCACCATAACCATTTGGAACTTAAAAAGGCTGAACAGGCTGGAGTAGATGAAGTTATTATGACTGCCGATGTCAACCTATCAGCTTGTAGGGATACCGGAAACTCTCCGGCAAGCGATGATAAGAGGAGTGTTTCATGGCAAGACCGTGTAGCGTTGAAGGTCTAGTCCTTCCATAGATGTGGCTATGAAATAACATCCTTCTCAGATGATTAACTGCACTCTGCTTATTTTTTTCTGAAATATTTTGCAGTGCTTTGTATATCACAAGAGTCTTAGTTAGACATGCCTTAATGCAAGCTCGATCTGATGATGTGATGTTATGAAATATCCACCCAGATTTTGAACTGACGCACATTGACTGCATTTGTCTGGATTGTGTTCTGCTGCATCCTTTGGAAACATGGTGACAAATCAATGTTTTTTGTTTGTTGTTACCATTTACTTCTGAAATGGCAACTGCAGCAGACTGGCATCCTGGCATTTTGACATGTATATCATATTGTAACATGTGAAATGAATTATGAATATCAAGCAAGTTG]
[+] EMBL AK070023 [CGGAGAGGGGCGAGAGGGACAGGTTGGACGAGCTCCGGCGGGACTACCGCGATGTGCTCAAGGTGAAGGGTTTGCCCCCTCTGGTTTCCCTTGCCCTTTGCGGCGCGGTTTCGCCGATGAATCTCCTTGTTCACCTCCTTGTCTGAACTACTAATTCGCTGCGGTTGCAATTTTGTATTGCATATGATATCTCCTAGTACTCTGCTCCGCTTGATTGCAGGAGTCCAGGGGTTGATTGCATAGCTGATGTCAGTGCGAAACTAGGGTTGATTGCATAGCTGATGTTAGTGTGAAACTAGGATTGATTGCATAGCTGATGTTAGTGCGAAACTAGGGCTGTCAAGAATTGGTTATGGTTGTAGCATGGGATGATGACATGGTCACATTGATACTGCATATATACACTTGCACTACATTGGACTTGAATCTGATAGCGGTTCTTGATGCAGGATAATGAGATGAAGAGGAGGAAGCTAGAGAGCATAAACAAGCGAAAGCTCGTCCTGCTTTCTGAAGTCAAGTTCTTACAAAAGAAGTTAAATTCTTTCAAGAAGAATGATTCGCAGCAAGTACGGCTGAAGAAGAAAGCTCCGCGAGTCCCATCTCATGTGGGAATCAATGATGCTTCAGCTTTTTATGGGGCGAGTACTGAAGTGCCATCTACCAGTAAAAGAACAGATTTAGATTTAAATCAAGATTCTGCAATGAATGATGAGCTTTCTGATTTCCCGGGGCACCATAACCATTTGGAACTTAAAAAGGCTGAACAGGCTGGAGTAGATGAAGTTATTATGACTGCCGATGTCAACCTATCAGCTTGTAGGGATACCGGAAACTCTCCGGCAAGCGATGATAAGAGGAGTGTTTCATGGCAAGACCGTGTAGCGTTGAAGGTCTAGTCCTTCCATAGATGTGGCTATGAAATAACATCCTTCTCAGATGATTAACTGCACTCTGCTTATTTTTTTCTGAAATATTTTGCAGTGCTTTGTATATCACAAGAGTCTTAGTTAGACATGCCTTAATGCAAGCTCGATCTGATGATGTGATGTTATGAAATATCCACCCAGATTTTGAACTGACGCACATTGACTGCATTTGTCTGGATTGTGTTCTGCTGCATCCTTTGGAAACATGGTGACAAATCAATGTTTTTTGTTTGTTGTTACCATTTACTTCTGAAATGGCAACTGCAGCAGACTGGCATCCTGGCATTTTGACATGTATATCATATTGTAACATGTGAAATGAATTATGAATATCAAGCAAGTTG]
consensusID : consensus_6913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 882 fasta sequence
[CGGAGAGGGGCGAGAGGGACAGGTTGGACGAGCTCCGGCGGGACTACCGCGATGTGCTCAAGGATAATGAGATGAAGAGGAGGAAGCTAGAGAGCATAAACAAGCGAAAGCTCGTCCTGCTTTCTGAAGTCAAGTTCTTACAAAAGAAGTTAAATTCTTTCAAGAAGAATGATTCGCAGCAAGTACGGCTGAAGAAGAAAGCTCCGCGAGTCCCATCTCATGTGGGAATCAATGATGCTTCAGCTTTTTATGGGGCGAGTACTGAAGTGCCATCTACCAGTAAAAGAACAGATTTAGATTTAAATCAAGATGCTGCAATGAATGATGAGCTTTCTGATTTCCCGGGGCACCATAACCA-TTTGGAACTTAAAAAGGCTGAACAGGCTGGAGTAGATGAAGATATTATGACTGCCGATGTCAACCTATCAGCTTGTAGGGATACCGGAAACTCTCCGGCAAGCGATGATAAGAGGAGTGTTTCATGGCAAGACCGTGTAGCGTTGAAGGTCTAGTCCTTCCATAGATGTGGCTATGAAATAACATCCTTCTCAGATGATTAACTGCACTCTGCTTATTTTTTTCTGAAATATTTTGCAGTGCTTTGTATATCACAAGAGTCTTAGTTAGACATGCCTTAATGCAAGCTCGATCTGATGATGTGATGTTATGAAATATCCACCCAGATTTTGAACTGACGCACATTGACTGCATTTGTCTGGATTGTGTTCTGCTGCATCCTTTGGAAACATGGTGACAAATCAATGTTTTTTGTTTGTTGTTACCATTTACTTCTGAAATGGCAACTGCAGCAGACTGGCATCCTGGCATTTTGACATGTATATCATATTGTAACATGTGAAATGAATTATGAATATCAAGCAA]
[+] EMBL AK059873 [CGGAGAGGGGCGAGAGGGACAGGTTGGACGAGCTCCGGCGGGACTACCGCGATGTGCTCAAGGATAATGAGATGAAGAGGAGGAAGCTAGAGAGCATAAACAAGCGAAAGCTCGTCCTGCTTTCTGAAGTCAAGTTCTTACAAAAGAAGTTAAATTCTTTCAAGAAGAATGATTCGCAGCAAGTACGGCTGAAGAAGAAAGCTCCGCGAGTCCCATCTCATGTGGGAATCAATGATGCTTCAGCTTTTTATGGGGCGAGTACTGAAGTGCCATCTACCAGTAAAAGAACAGATTTAGATTTAAATCAAGATTCTGCAATGAATGATGAGCTTTCTGATTTCCCGGGGCACCATAACCA TTTGGAACTTAAAAAGGCTGAACAGGCTGGAGTAGATGAAGATATTATGACTGCCGATGTCAACCTATCAGCTTGTAGGGATACCGGAAACTCTCCGGCAAGCGATGATAAGAGGAGTGTTTCATGGCAAGACCGTGTAGCGTTGAAGGTCTAGTCCTTCCATAGATGTGGCTATGAAATAACATCCTTCTCAGATGATTAACTGCACTCTGCTTATTTTTTTCTGAAATATTTTGCAGTGCTTTGTATATCACAAGAGTCTTAGTTAGACATGCCTTAATGCAAGCTCGATCTGATGATGTGATGTTATGAAATATCCACCCAGATTTTGAACTGACGCACATTGACTGCATTTGTCTGGATTGTGTTCTGCTGCATCCTTTGGAAACATGGTGACAAATCAATGTTTTTTGTTTGTTGTTACCATTTACTTCTGAAATGGCAACTGCAGCAGACTGGCATCCTGGCATTTTGACATGTATATCATATTGTAACATGTGAAATGAATTATGAATATCAAGCAA]
[+] EMBL BM419956 [ TACCAAAGAAGTTAAATTCTTTCAAGAAGAATGATTCGCAGCAAGTACGGCTGAAGAAGAAAGCTCCGCGAGTCCCATCTCATGTGGGAATCAATGATGCTTCAGCTTTTTATGGGGCGAGTACTGAAGTGCCATCTACCAGTNAAAGAACAGATTTAGATTTAAATCAAGATGCTGCAATGAATGATGAGCTTTCTGATTTCCCGGGGCACCATAACCANTTTGGAACTTAAAAAGGCTGAACAGGCTGGAGTAGATGAAGATATTATGACCGCCGATGTCAACCTATCAGCTTGTAGGGATACCGGAAACTCTCCGGCAAGCGATGATAAGAGGAGTGTTTCAT GCAAGACCGTGTAGCGTTGAAGGTCTAGTCCTTCCATAGATGTGGCTATGAAATAACATCCTTCTCAGATGATTGACTGCACTCTGCTTATTTTTTTCTGAAATATTTTGCAGTGCTTTGTA ]
[+] EMBL AU033186 [ GGCCAAGTACTGAAGTNCCACCTACCAGTAAAAGAACAGATTTAGATTTAAACCAAGATCCTGCAATGAATGATGAGCTTCCTGATTCCCCGGGGCACCATAACCA TTTGGAACTTAAAAAGGCTGAACAGGCTGGAGTAGATGAAGATATTATGACTGCCGATGTCAACCTATCAGCTTGTAGGGATACCGGAAACTCTCCGGCAAGCGATGATAAGAGGAGTGTTTCATGGCAAGACCGTGTAGCGTTGAAGGTCTAGTCCTTCCATAGATGTGGCTATGAAATAACATCCTTCTCAGATGATTAACTGCACTCTGCTTATTTTTTTCTGAAATATTTTGCAGTGCTTTGTATATCACAAGAGTCTTAGTTAGACATGCCTTAATGCAAGCTCGATCTGATGATGTGATGTTAAAAAAaaaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6913#0 CGGAGAGGGGCGAGAGGGACAGGTTGGACGAGCTCCGGCGGGACTACCGCGATGTGCTCA 60
consensus_6913#1 ------------------------------------------------------------
consensus_6913#0 AGGTGAAGGGTTTGCCCCCTCTGGTTTCCCTTGCCCTTTGCGGCGCGGTTTCGCCGATGA 120
consensus_6913#1 ------------------------------------------------------------
consensus_6913#0 ATCTCCTTGTTCACCTCCTTGTCTGAACTACTAATTCGCTGCGGTTGCAATTTTGTATTG 180
consensus_6913#1 ------------------------------------------------------------
consensus_6913#0 CATATGATATCTCCTAGTACTCTGCTCCGCTTGATTGCAGGAGTCCAGGGGTTGATTGCA 240
consensus_6913#1 ------------------------------------------------------------
consensus_6913#0 TAGCTGATGTCAGTGCGAAACTAGGGTTGATTGCATAGCTGATGTTAGTGTGAAACTAGG 300
consensus_6913#1 ------------------------------------------------------------
consensus_6913#0 ATTGATTGCATAGCTGATGTTAGTGCGAAACTAGGGCTGTCAAGAATTGGTTATGGTTGT 360
consensus_6913#1 ------------------------------------------------------------
consensus_6913#0 AGCATGGGATGATGACATGGTCACATTGATACTGCATATATACACTTGCACTACATTGGA 420
consensus_6913#1 ---------------------CGGAGAGGGGCGAGAGGGACAGG-TTGGACGAGCTCCGG 38
* * * * * * * *** ** * * *
consensus_6913#0 CTTGAATCTGATAGCGGTTCTTGATGCAGGATAATGAGATGAAGAGGAGGAAGCTAGAGA 480
consensus_6913#1 CGGGACT---ACCGCGATG--TGCTCAAGGATAATGAGATGAAGAGGAGGAAGCTAGAGA 93
* ** * * *** * ** * *********************************
consensus_6913#0 GCATAAACAAGCGAAAGCTCGTCCTGCTTTCTGAAGTCAAGTTCTTACAAAAGAAGTTAA 540
consensus_6913#1 GCATAAACAAGCGAAAGCTCGTCCTGCTTTCTGAAGTCAAGTTCTTACAAAAGAAGTTAA 153
************************************************************
consensus_6913#0 ATTCTTTCAAGAAGAATGATTCGCAGCAAGTACGGCTGAAGAAGAAAGCTCCGCGAGTCC 600
consensus_6913#1 ATTCTTTCAAGAAGAATGATTCGCAGCAAGTACGGCTGAAGAAGAAAGCTCCGCGAGTCC 213
************************************************************
consensus_6913#0 CATCTCATGTGGGAATCAATGATGCTTCAGCTTTTTATGGGGCGAGTACTGAAGTGCCAT 660
consensus_6913#1 CATCTCATGTGGGAATCAATGATGCTTCAGCTTTTTATGGGGCGAGTACTGAAGTGCCAT 273
************************************************************
consensus_6913#0 CTACCAGTAAAAGAACAGATTTAGATTTAAATCAAGATTCTGCAATGAATGATGAGCTTT 720
consensus_6913#1 CTACCAGTAAAAGAACAGATTTAGATTTAAATCAAGATGCTGCAATGAATGATGAGCTTT 333
************************************** *********************
consensus_6913#0 CTGATTTCCCGGGGCACCATAACCATTTGGAACTTAAAAAGGCTGAACAGGCTGGAGTAG 780
consensus_6913#1 CTGATTTCCCGGGGCACCATAACCATTTGGAACTTAAAAAGGCTGAACAGGCTGGAGTAG 393
************************************************************
consensus_6913#0 ATGAAGTTATTATGACTGCCGATGTCAACCTATCAGCTTGTAGGGATACCGGAAACTCTC 840
consensus_6913#1 ATGAAGATATTATGACTGCCGATGTCAACCTATCAGCTTGTAGGGATACCGGAAACTCTC 453
****** *****************************************************
consensus_6913#0 CGGCAAGCGATGATAAGAGGAGTGTTTCATGGCAAGACCGTGTAGCGTTGAAGGTCTAGT 900
consensus_6913#1 CGGCAAGCGATGATAAGAGGAGTGTTTCATGGCAAGACCGTGTAGCGTTGAAGGTCTAGT 513
************************************************************
consensus_6913#0 CCTTCCATAGATGTGGCTATGAAATAACATCCTTCTCAGATGATTAACTGCACTCTGCTT 960
consensus_6913#1 CCTTCCATAGATGTGGCTATGAAATAACATCCTTCTCAGATGATTAACTGCACTCTGCTT 573
************************************************************
consensus_6913#0 ATTTTTTTCTGAAATATTTTGCAGTGCTTTGTATATCACAAGAGTCTTAGTTAGACATGC 1020
consensus_6913#1 ATTTTTTTCTGAAATATTTTGCAGTGCTTTGTATATCACAAGAGTCTTAGTTAGACATGC 633
************************************************************
consensus_6913#0 CTTAATGCAAGCTCGATCTGATGATGTGATGTTATGAAATATCCACCCAGATTTTGAACT 1080
consensus_6913#1 CTTAATGCAAGCTCGATCTGATGATGTGATGTTATGAAATATCCACCCAGATTTTGAACT 693
************************************************************
consensus_6913#0 GACGCACATTGACTGCATTTGTCTGGATTGTGTTCTGCTGCATCCTTTGGAAACATGGTG 1140
consensus_6913#1 GACGCACATTGACTGCATTTGTCTGGATTGTGTTCTGCTGCATCCTTTGGAAACATGGTG 753
************************************************************
consensus_6913#0 ACAAATCAATGTTTTTTGTTTGTTGTTACCATTTACTTCTGAAATGGCAACTGCAGCAGA 1200
consensus_6913#1 ACAAATCAATGTTTTTTGTTTGTTGTTACCATTTACTTCTGAAATGGCAACTGCAGCAGA 813
************************************************************
consensus_6913#0 CTGGCATCCTGGCATTTTGACATGTATATCATATTGTAACATGTGAAATGAATTATGAAT 1260
consensus_6913#1 CTGGCATCCTGGCATTTTGACATGTATATCATATTGTAACATGTGAAATGAATTATGAAT 873
************************************************************
consensus_6913#0 ATCAAGCAAGTTG 1273
consensus_6913#1 ATCAAGCAA---- 882
*********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||