cluster # 6914

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Oryza sativa
cluster # 6914 cluster # 6914 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6914#0 length = 750 sequences # 2

consensus_6914#1 length = 705 sequences # 1
consensus_6914#2 length = 352 sequences # 1

consensusID : consensus_6914#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 750
fasta sequence

                              [TCCTCGCACCATGCCGCCTTCGCACCAACAGCATCCTCCTTCTCCTCCTCCTCCTCCTCCTCCATCCTCACGTCGCGCATCCGTCGCCGCCGATGGTCCTTGTGCCGAGCTGTTGGCTGCCGCCTCTCCTTCTCCCCGTTGCTCTGCCGTGCCGGTCAACCCGAAGCCTCGCGATGCGTGGTGACTGGTGAGGGGGTGGACCGTGCGCATTGGGCTGTGTCCGAATAGTTGATGGTCGCCTTCTCCTCCTCGTTGTCCTGCCGCGCCTGCAATGCTCGGTGGCACGAGGTGAGGGCATGGAATATGAGTAGCACCACCTCGGTAATGTTTACCATGCTGATAATCTTCTCCACTTATTTGACTTATCTGATCCAGCAGTTTGTCATATTTTCGGATTTGTGTGATTTTTATTCTTTTTTTCTGGGATTATTGGTCAGTGTAGTTCTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGATCTTTGATTTTTTTTTATTTGTCCGGCACACACGAGTTAGATTTTGTATCGGACTGTTTTTTTTTTTATTTTTGCCGTTGTACGCGATGTAAGTTCGCGTGTGTGGACGGAGGGATGGAGGGTGCCGCTTGGTTGGATTGACGGAAAAAAATTAAGGCATGTTTAGATTGTAGCCAAAATAAACCTTAAGTTGGTAATATTGCCAAAATTTTGGCAGAATTTCTTATATATTTACTAAAGTTTGACAACATTTTTTTTTGACAACT]

[+] EMBL CB658259             [TCCTCGCACCATGCCGCCTTCGCACCAACAGCATCCTCCTTCTCCTCCTCCTCCTCCTCCTCCATCCTCACGTCGCGCATCCGTCGCCGCCGATGGTCCTTGTGCCGAGCTGTTGGCTGCCGCCTCTCCTTCTCCCCGTTGCTCTGCCGTGCCGGTCAACCCGAAGCCTCGCGATGCGTGGTGACTGGTGAGGGGGTGGACCGTGCGCATTGGGCTGTGTCCGAATAGTTGATGGTCGCCTTCTCCTCCTCGTTGTCCTGCCGCGCCTGCAATGCTCGGTGGCACGAGGTGAGGGCATGGAATATGAGTAGCACCACCTCGGTAATGTTTACCATGCTGATAATCTTCTCCACTTATTTGACTTATCTGATCCAGCAGTTTGTCATATTTTCGGATTTGTGTGATTTTTATTCTTTTTTTCTGGGATTATTGGTCAGTGTAGTTCTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGATCTTTGATTTTTTTTTATTTGTCCGGCACACACGAGTTAGATTTTGTATCGGACTGTTTTTTTTTTTATTTTTGCCGTTGTACGCGATGTAAGTTCGCGTGTGTGGACGGAGGGATGGAGGGTGCCGCTTGGTTGGATTGACGGAAAAAAATTAAGGCATGTTTAGATTGTAGCCAAAATAAACCTTAAGTTGGTAATATTGCCAAAATTTTGGCAGAATTTCTTATATATTTACTAAAGTTTGACAACATTTTTTTTTGACAACT]
[+] EMBL CB658189             [TCCTCGCACCATGCCGCCTTCGCACCAACAGCATCCTCCTTCTCCTCCTCCTCCTCCTCCTCCATCCTCACGTCGCGCATCCGTCGCCGCCGATGGTCCTTGTGCCGAGCTGTTGGCTGCCGCCTCTCCTTCTCCCCGTTGCTCTGCCGTGCCGGTCAACCCGAAGCCTCGCGATGCGTGGTGACTGGTGAGGGGGTGGACCGTGCGCATTGGGCTGTGTCCGAATAGTTGATGGTCGCCTTCTCCTCCTCGTTGTCCTGCCGCGCCTGCAATGCTCGGTGGCACGAGGTGAGGGCATGGAATATGAGTAGCACCACCTCGGTAATGTTTACCATGCTGATAATCTTCTCCACTTATTTGACTTATCTGATCCAGCAGTTTGTCATATTTTCGGATTTGTGTGATTTTTATTCTTTTTTTCTGGGATTATTGGTCAGTGTAGTTCTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGATCTTTGATTTTTTTTTATTTGTCCGGCACACACGAGTTAGATTTTGTATCGGACTGTTTTTTTTTTTATTTTTGCCGTTGTACGCGATGTAAGTTCGCGTGTGTGGACGGAGGGATGGAGGGTGCCGCTTGGTTGGATTGACGGAAAAAAATTAAGGCATGTTTAGATTGTAGCCAAAATAAACCTTAAGTTGGTAATATTGCCAAAATTTTGGCAGAATTTCTTATATATTTACTAAAGTTTGACAACATTTTTTTTTGA     ]




>consensus_6914#0
TCCTCGCACCATGCCGCCTTCGCACCAACAGCATCCTCCTTCTCCTCCTCCTCCTCCTCC
TCCATCCTCACGTCGCGCATCCGTCGCCGCCGATGGTCCTTGTGCCGAGCTGTTGGCTGC
CGCCTCTCCTTCTCCCCGTTGCTCTGCCGTGCCGGTCAACCCGAAGCCTCGCGATGCGTG
GTGACTGGTGAGGGGGTGGACCGTGCGCATTGGGCTGTGTCCGAATAGTTGATGGTCGCC
TTCTCCTCCTCGTTGTCCTGCCGCGCCTGCAATGCTCGGTGGCACGAGGTGAGGGCATGG
AATATGAGTAGCACCACCTCGGTAATGTTTACCATGCTGATAATCTTCTCCACTTATTTG
ACTTATCTGATCCAGCAGTTTGTCATATTTTCGGATTTGTGTGATTTTTATTCTTTTTTT
CTGGGATTATTGGTCAGTGTAGTTCTAATACTTACAATGATTGTTCGATTGGTTTGTTAA
TCGATCTTTGATTTTTTTTTATTTGTCCGGCACACACGAGTTAGATTTTGTATCGGACTG
TTTTTTTTTTTATTTTTGCCGTTGTACGCGATGTAAGTTCGCGTGTGTGGACGGAGGGAT
GGAGGGTGCCGCTTGGTTGGATTGACGGAAAAAAATTAAGGCATGTTTAGATTGTAGCCA
AAATAAACCTTAAGTTGGTAATATTGCCAAAATTTTGGCAGAATTTCTTATATATTTACT
AAAGTTTGACAACATTTTTTTTTGACAACT

consensusID : consensus_6914#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [CGAGCAAGGAGGCAAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCACCTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCAACGACCACGGCGAAGGGGACAAGAAGGCGGCAGCAGACCAGCAGTGGCCATGGTGATGGTGGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCGGTGGAGGGCAGCGTGAAGGCTGGCAACGACCTCAACTTCTCCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTGCAAGCGCAGGCGGCAACGGTGTGACCACAACATCAAGTGGTCCAGCGCTGTTCATCTTCTATCCAGGCTAGTCGCCATCGATCTAGTGCCGGACCTGAAGAAGCTGAAGAAAGAGGTCAAGATGGATATGTAAGAAGGGATTTGTCAATTGCTTTAGGTTGCAATGCTAATTTTGTTGGGGTGGATTGGAGTTCTCCCATGGATCCCTTTGTTGATTTTATTTGGGTGAATCTTTGGTTATTGTGTTTGCCTTATGGTGTTGTGCATCCGATTTGGATTTGGTTGTGTCGAACTATGAAAGTCTGATTTTGGGAAGTGGTTCTATGAGATTAGATTATTGTTAGGATTATCGGTCGGTGTAGTTGTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGATCTTTG]

[+] EMBL AK062934             [CGAGCAAGGAGGCAAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCACCTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCAACGACCACGGCGAAGGGGACAAGAAGGCGGCAGCAGACCAGCAGTGGCCATGGTGATGGTGGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCGGTGGAGGGCAGCGTGAAGGCTGGCAACGACCTCAACTTCTCCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTGCAAGCGCAGGCGGCAACGGTGTGACCACAACATCAAGTGGTCCAGCGCTGTTCATCTTCTATCCAGGCTAGTCGCCATCGATCTAGTGCCGGACCTGAAGAAGCTGAAGAAAGAGGTCAAGATGGATATGTAAGAAGGGATTTGTCAATTGCTTTAGGTTGCAATGCTAATTTTGTTGGGGTGGATTGGAGTTCTCCCATGGATCCCTTTGTTGATTTTATTTGGGTGAATCTTTGGTTATTGTGTTTGCCTTATGGTGTTGTGCATCCGATTTGGATTTGGTTGTGTCGAACTATGAAAGTCTGATTTTGGGAAGTGGTTCTATGAGATTAGATTATTGTTAGGATTATCGGTCGGTGTAGTTGTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGATCTTTG]




>consensus_6914#1
CGAGCAAGGAGGCAAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCACC
TCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCAA
CGACCACGGCGAAGGGGACAAGAAGGCGGCAGCAGACCAGCAGTGGCCATGGTGATGGTG
GATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCGGTGGAGGGCAGCGTGAAGGCTGG
CAACGACCTCAACTTCTCCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTGCAAGC
GCAGGCGGCAACGGTGTGACCACAACATCAAGTGGTCCAGCGCTGTTCATCTTCTATCCA
GGCTAGTCGCCATCGATCTAGTGCCGGACCTGAAGAAGCTGAAGAAAGAGGTCAAGATGG
ATATGTAAGAAGGGATTTGTCAATTGCTTTAGGTTGCAATGCTAATTTTGTTGGGGTGGA
TTGGAGTTCTCCCATGGATCCCTTTGTTGATTTTATTTGGGTGAATCTTTGGTTATTGTG
TTTGCCTTATGGTGTTGTGCATCCGATTTGGATTTGGTTGTGTCGAACTATGAAAGTCTG
ATTTTGGGAAGTGGTTCTATGAGATTAGATTATTGTTAGGATTATCGGTCGGTGTAGTTG
TAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGATCTTTG

consensusID : consensus_6914#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [CCGCCCACGCGTCCGAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCACCTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCAACGACCACGGCGAAGGGGACAAGAAGGCGGCANAGACCAGCAGTGGCCATGGTGATGGTGGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCGGTGGAGGGCAGCGTGAAGGCTGGCAACGACCTCAACTTCTNCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTGCAAGCGCAGGCGGCAACGGTGTTTACCACAACATCAAAGTGGGTCCAACGCTGTTTC]

[+] EMBL AU033220             [CCGCCCACGCGTCCGAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCACCTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCAACGACCACGGCGAAGGGGACAAGAAGGCGGCANAGACCAGCAGTGGCCATGGTGATGGTGGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCGGTGGAGGGCAGCGTGAAGGCTGGCAACGACCTCAACTTCTNCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTGCAAGCGCAGGCGGCAACGGTGTTTACCACAACATCAAAGTGGGTCCAACGCTGTTTC]




>consensus_6914#2
CCGCCCACGCGTCCGAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCAC
CTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCA
ACGACCACGGCGAAGGGGACAAGAAGGCGGCANAGACCAGCAGTGGCCATGGTGATGGTG
GATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCGGTGGAGGGCAGCGTGAAGGCTGG
CAACGACCTCAACTTCTNCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTGCAAGC
GCAGGCGGCAACGGTGTTTACCACAACATCAAAGTGGGTCCAACGCTGTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6914#1      -CGAGCAAGGAGGCAAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCAC 59
consensus_6914#2      CCGCCCACGCGTCCGAGCAGTAGCGTCCGGTTCGCTACCTCTACCTCTCCTTTCCTCCAC 60
consensus_6914#0      -----------TCCTCGCACCA-TGCCGCCTTCGCACCAACAGCATCCTCCTTCTCCTCC 48
                                   *  ***  *  * *   *****  *  *  * **  * ***  *  *

consensus_6914#1      CTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCA 119
consensus_6914#2      CTCTCATCCTCCGCCTCGAGCATTCCCTCTCATCCTCCCGCCCCGAGCGTCCGGTTCGCA 120
consensus_6914#0      TCCTCCTCCTCCTCCATCCTCACGTCG-CGCATCCGTCGCCGCCGATGGTCCT-TGTGCC 106
                        *** ****** **     **   *  * *****  *  * ****  ****  *  ** 

consensus_6914#1      ACGACCACGGCGAAGGGGACAAGAAGGCGGCAGCAGACCAGCAGTGGCCATGGTGATGGT 179
consensus_6914#2      ACGACCACGGCGAAGGGGACAAGAAGGCGGCAN-AGACCAGCAGTGGCCATGGTGATGGT 179
consensus_6914#0      GAGCTGTTGGCTGCCGCCTCTCCTTCTCCCCGT-TGCTCTGCCGTGCCGGTCAACCCGAA 165
                        *     ***    *   *       *  *    *  * ** *** *  *      *  

consensus_6914#1      GGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCG---GTGGAGGGCAGCGTGAAGG 236
consensus_6914#2      GGATCTAGCAAGGCGGAGGCTGGCGTTGGGGTGGACCG---GTGGAGGGCAGCGTGAAGG 236
consensus_6914#0      GCCTCGCGATGCGTGGTGACTGGTGAGGGGGTGGACCGTGCGCATTGGGCTGTGTCCGAA 225
                      *  **  *    * ** * **** *  ***********   *    **** * **     

consensus_6914#1      CTGGCAACGACC-TCAACTTCTCCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTG 295
consensus_6914#2      CTGGCAACGACC-TCAACTTCTNCGGATCTGGTGGTTGTAAGTGGCAATGGAGGAAGGTG 295
consensus_6914#0      TAGTTGATGGTCGCCTTCTCCTCCTCGTTGTCCTGCCGCGCCTG-CAATGCTCGGTGGCA 284
                        *   * *  *  *  ** ** *   *      *  *    ** *****   *  **  

consensus_6914#1      CAAG-CGCAGGCGGCAACGGTGTG-ACCACAACATCAAG--TGGTC-CAGCGCTGTTCAT 350
consensus_6914#2      CAAG-CGCAGGCGGCAACGGTGTTTACCACAACATCAAAGTGGGTC-CAACGCTGTTTC- 352
consensus_6914#0      CGAGGTGAGGGCATGGAATATGAGTAGCACCACCTCGGTAATGTTTACCATGCTGATAAT 344
                      * **  *  ***    *   **   * *** ** **      * *  *   **** *   

consensus_6914#1      CTTCTATCCAGGCTAGTCGCCATCGATCTAGTGCCGGACCTGAA----GAAGCTGAAGAA 406
consensus_6914#2      ------------------------------------------------------------
consensus_6914#0      CTTCTCCACTTATTTGACTTATCTGATCCAGCAGTTTGTCATATTTTCGGATTTGTGTGA 404
                                                                                  

consensus_6914#1      AGAGGTCAAGATGGATATGTAAGAAGGGATTTGTCAATTGCTTTAGGTTGCAATGCTAAT 466
consensus_6914#2      ------------------------------------------------------------
consensus_6914#0      TTTTTATTCTTTTTTTCTGGGATTATTGGTCAGTGTAGTTCTAATACTTACAATGATTGT 464
                                                                                  

consensus_6914#1      TTTGTTGGGGTGG-ATTGGAGTTCTCCCATGGATCCCTTTGTTGATTTTATTTGGGTGAA 525
consensus_6914#2      ------------------------------------------------------------
consensus_6914#0      TCGATTGGTTTGTTAATCGATCTTTGATTTTTTTTTATTTGTCCGGCACACACGAGTTAG 524
                                                                                  

consensus_6914#1      TCTTTG------GTTATTGTGTTTGCCTTATGGTGTTGTGCATCCGATTTGGATTTGGTT 579
consensus_6914#2      ------------------------------------------------------------
consensus_6914#0      ATTTTGTATCGGACTGTTTTTTTTTTTATTTTTGCCGTTGTACGCGATGTAAGTTCGCGT 584
                                                                                  

consensus_6914#1      GTGTCGAACTATGAAAGTCTGATTTTGGGAAGTGGTTCTATGAGATTAGATTATTGTTAG 639
consensus_6914#2      ------------------------------------------------------------
consensus_6914#0      GTGTGGACGGAGGGATGGAGGGTGCCGCTTGGTTGGATTGACGGAAAAAAATTAAGGCAT 644
                                                                                  

consensus_6914#1      GATTATCGGTCGGTGTAGTTGTAATACTTACAATGATTGTTCGATTGGTTTGTTAATCGA 699
consensus_6914#2      ------------------------------------------------------------
consensus_6914#0      GTTTA--GATTGTAGCCAAAATAAACCTTAAGTTGGTAATATTGCCAAAATTTTGGCAGA 702
                                                                                  

consensus_6914#1      TCTTTG------------------------------------------ 705
consensus_6914#2      ------------------------------------------------
consensus_6914#0      ATTTCTTATATATTTACTAAAGTTTGACAACATTTTTTTTTGACAACT 750