cluster # 6915

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Oryza sativa
cluster # 6915 cluster # 6915 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6915#0 length = 669 sequences # 2

consensus_6915#1 length = 350 sequences # 2

consensusID : consensus_6915#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 669
fasta sequence

                              [CAAGTCGCTGGCATCATTCAGCACAGACAGTGCAACGTACTCGAGGTGACGGCGGAGAGGAACACCATTCTTCATGTCGCAGCGGAGAAAGGGCATGGCGAGCTGATCCAGGAGCTCTACCATAGGTTCATCAGGGACAATAGTCTCCTCTCTCGCCGGAACTCGGCGATGGACACACCTCTGCACTGCGC-GGCGAGGGCAGGGCACGCCGGCACCGTGACGATCCTTGTAAATCTGGCCCAGGACTGCGAGGAGAATATCCTGGGATGCCAGAACGCGGCCGGGGACACGGCCCTACACATGGCAGCGAGGCACGGGCATGGCGCCACCGTGGAGGCTCTTGTCGTGGCACGTGCGAAGGCGACCGTGTTAGTTAGCATGAAAGGTTCGGATCATGTGATGACGACCTGACAGCTTGCATGCATGTAGTTGTTGAGGTTAGTTTGGATTAGGTTAGTCTATCCATGCGGATCAGGTTAGCCTTTCCTCCACATGCGATAACAGATGTTTGTTAGAGTTTGTTTTCTGTTTTCTGTTACTGCATGCAGTCGTTTCATCAATCTCGGCTTCGGTTGTTCTCAGCTGCGCCGAACTCTGTATCGCCACGATGGGGGCTGTTCCCATCACATATATATTAACACGAAGGCGACGCACAGGATTAGTGCGATC]

[+] EMBL AK068021             [CAAGTCGCTGGCATCATTCAGCACAGACAGTGCAACGTACTCGAGGTGACGGCGGAGAGGAACACCATTCTTCATGTCGCAGCGGAGAAAGGGCATGGCGAGCTGATCCAGGAGCTCTACCATAGGTTCATCAGGGACAATAGTCTCCTCTCTCGCCGGAACTCGGCGATGGACACACCTCTGCACTGCGC GGCGAGGGCAGGGCACGCCGGCACCGTGACGATCCTTGTAAATCTGGCCCAGGACTGCGAGGAGAATATCCTGGGATGCCAGAACGCGGCCGGGGACACGGCCCTACACATGGCAGCGAGGCACGGGCATGGCGCCACCGTGGAGGCTCTTGTCGTGGCACGTGCGAAGGCGACCGTGTTAGTTAGCATGAAAGGTTCGGATCATGTGATGACGACCTGACAGCTTGCATGCATGTAGTTGTTGAGGTTAGTTTGGATTAGGTTAGTCTATCCATGCGGATCAGGTTAGCCTTTCCTCCACATGCGATAACAGATGTTTGTTAGAGTTTGTTTTCTGTTTTCTGTTACTGCATGCAGTCGTTTCATCAATCTCGGCTTCGGTTGTTCTCAGCTGCGCCGAACTCTGTATCGCCACGATGGGGGCTGTTCCCATCACATATATATTAACACGAAGGCGACGCACAGGATTAGTGCGATC]
[+] EMBL AU174698             [                                                                                                                       CCATAGGTTCATCAGGGACAATAGTCTCCTCTCTCGCCGGAACTCGGCGATGGACACACCTCTGCACTGCGCNGGCGAGGGCAGGGCACGCCGGCACCGTGACGATCCTTGTAAATCTGGCCCAGGACTGCGAGGAGAATATCCTGGGATGCCAGAACGCGGCCGGGGACACGGCCCTACACATGGCAGCGAGGCACGGGCATGGCGCCACCGTGGAGGCTCTTGTCGTGGCACGTGCGAAGGCGACCGTGTTAGTTAGCATGAAAGGTTCGGATCATGTGATGACGACCTGACAGCTTGCATGCATGTAGTTGTTGAGGTTAGTTTGGATTAGGTTAGTCTATCCATGCGGATCAGGTTAGCCTTTCCTCCACATGCGATAACAGATGTT                                                                                                                                                                ]




>consensus_6915#0
CAAGTCGCTGGCATCATTCAGCACAGACAGTGCAACGTACTCGAGGTGACGGCGGAGAGG
AACACCATTCTTCATGTCGCAGCGGAGAAAGGGCATGGCGAGCTGATCCAGGAGCTCTAC
CATAGGTTCATCAGGGACAATAGTCTCCTCTCTCGCCGGAACTCGGCGATGGACACACCT
CTGCACTGCGCGGCGAGGGCAGGGCACGCCGGCACCGTGACGATCCTTGTAAATCTGGCC
CAGGACTGCGAGGAGAATATCCTGGGATGCCAGAACGCGGCCGGGGACACGGCCCTACAC
ATGGCAGCGAGGCACGGGCATGGCGCCACCGTGGAGGCTCTTGTCGTGGCACGTGCGAAG
GCGACCGTGTTAGTTAGCATGAAAGGTTCGGATCATGTGATGACGACCTGACAGCTTGCA
TGCATGTAGTTGTTGAGGTTAGTTTGGATTAGGTTAGTCTATCCATGCGGATCAGGTTAG
CCTTTCCTCCACATGCGATAACAGATGTTTGTTAGAGTTTGTTTTCTGTTTTCTGTTACT
GCATGCAGTCGTTTCATCAATCTCGGCTTCGGTTGTTCTCAGCTGCGCCGAACTCTGTAT
CGCCACGATGGGGGCTGTTCCCATCACATATATATTAACACGAAGGCGACGCACAGGATT
AGTGCGATC

consensusID : consensus_6915#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 350
fasta sequence

                              [GAGGTCATGGCGTTGCTTCTGCAACAACGGCACGGCGCTGGATCAGCAGGACATCGTCATCAAGTCGCTGGCATTATTCAGCATGAACAGTGCAACCTACTCGAGGTGACGGCGGAGAGGAACACCGTTCTTCATGTCGCAGCGGAGAAAGGGCACGTCGAGCTGATCAA-GGAGCTCTACCACAGGTTCATCAAGGACAACAACTTCCTCTCTCGTCGAAACTCGGTACTGAACACGCCTCTGCACTGCGCAGCAAGGGAAGGGCACACCGGCACCGTGACAACCCTAGTACATCTAGCCCAGGACCGTGTGG-AGAATATCATGGGGTGCCAGAACACGGCCGGGGACAC]

[+] EMBL BU667153             [GAGGTCATGGCGTTGCTTCTGCAACAACGGCACGGCGCTGGATCAGCAGGACATCGTCATCAAGTCGCTGGCATTATTCAGCATGAACAGTGCAACCTACTCGAGGTGACGGCGGAGAGGAACACCGTTCTTCATGTCGCAGCGGAGAAAGGGCACGTCGAGCTGATCAA GGAGCTCTACCACAGGTTCATCAAGGACAACAACTTCCTCTCTCGTCGAAACTCGGTACTGAACACGCCTCTGCACTGCGCAGCAAGGGAAGGGCACACCGGCACCGTGACAACCCTAGTACATCTAGCCCAGGACCGTGTGG AGAATATCATGGGGTGCCAGAACACGGCCGGGGACAC]
[-] EMBL BU667366             [                                                                                                                                                          ACGTCGAGCTGATCAATGGAGCTCTACCACAGGTTCATCAAGGACAACAACTTCCTCTCTCGTCGAAACTCGGTACTGAACACGCCTCTGCACTGCGCAGCAAGGGAAGGGCACACCGG ACCGTGACAACCCTAGTACATCTAGCCCAGGACCGTGTGGCAGAATATCATGGGGTGCCAna                ]




>consensus_6915#1
GAGGTCATGGCGTTGCTTCTGCAACAACGGCACGGCGCTGGATCAGCAGGACATCGTCAT
CAAGTCGCTGGCATTATTCAGCATGAACAGTGCAACCTACTCGAGGTGACGGCGGAGAGG
AACACCGTTCTTCATGTCGCAGCGGAGAAAGGGCACGTCGAGCTGATCAAGGAGCTCTAC
CACAGGTTCATCAAGGACAACAACTTCCTCTCTCGTCGAAACTCGGTACTGAACACGCCT
CTGCACTGCGCAGCAAGGGAAGGGCACACCGGCACCGTGACAACCCTAGTACATCTAGCC
CAGGACCGTGTGGAGAATATCATGGGGTGCCAGAACACGGCCGGGGACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6915#0      ------------------------------------------------------------
consensus_6915#1      GAGGTCATGGCGTTGCTTCTGCAACAACGGCACGGCGCTGGATCAGCAGGACATCGTCAT 60
                                                                                  

consensus_6915#0      CAAGTCGCTGGCATCATTCAGCACAGACAGTGCAACGTACTCGAGGTGACGGCGGAGAGG 60
consensus_6915#1      CAAGTCGCTGGCATTATTCAGCATGAACAGTGCAACCTACTCGAGGTGACGGCGGAGAGG 120
                      ************** ********   ********** ***********************

consensus_6915#0      AACACCATTCTTCATGTCGCAGCGGAGAAAGGGCATGGCGAGCTGATCCAGGAGCTCTAC 120
consensus_6915#1      AACACCGTTCTTCATGTCGCAGCGGAGAAAGGGCACGTCGAGCTGATCAAGGAGCTCTAC 180
                      ****** **************************** * ********** ***********

consensus_6915#0      CATAGGTTCATCAGGGACAATAGTCTCCTCTCTCGCCGGAACTCGGCGATGGACACACCT 180
consensus_6915#1      CACAGGTTCATCAAGGACAACAACTTCCTCTCTCGTCGAAACTCGGTACTGAACACGCCT 240
                      ** ********** ****** *   ********** ** *******   ** **** ***

consensus_6915#0      CTGCACTGCGCGGCGAGGGCAGGGCACGCCGGCACCGTGACGATCCTTGTAAATCTGGCC 240
consensus_6915#1      CTGCACTGCGCAGCAAGGGAAGGGCACACCGGCACCGTGACAACCCTAGTACATCTAGCC 300
                      *********** ** **** ******* ************* * *** *** **** ***

consensus_6915#0      CAGGACTGCGAGGAGAATATCCTGGGATGCCAGAACGCGGCCGGGGACACGGCCCTACAC 300
consensus_6915#1      CAGGACCGTGTGGAGAATATCATGGGGTGCCAGAACACGGCCGGGGACAC---------- 350
                      ****** * * ********** **** ********* *************          

consensus_6915#0      ATGGCAGCGAGGCACGGGCATGGCGCCACCGTGGAGGCTCTTGTCGTGGCACGTGCGAAG 360
consensus_6915#1      ------------------------------------------------------------
                                                                                  

consensus_6915#0      GCGACCGTGTTAGTTAGCATGAAAGGTTCGGATCATGTGATGACGACCTGACAGCTTGCA 420
consensus_6915#1      ------------------------------------------------------------
                                                                                  

consensus_6915#0      TGCATGTAGTTGTTGAGGTTAGTTTGGATTAGGTTAGTCTATCCATGCGGATCAGGTTAG 480
consensus_6915#1      ------------------------------------------------------------
                                                                                  

consensus_6915#0      CCTTTCCTCCACATGCGATAACAGATGTTTGTTAGAGTTTGTTTTCTGTTTTCTGTTACT 540
consensus_6915#1      ------------------------------------------------------------
                                                                                  

consensus_6915#0      GCATGCAGTCGTTTCATCAATCTCGGCTTCGGTTGTTCTCAGCTGCGCCGAACTCTGTAT 600
consensus_6915#1      ------------------------------------------------------------
                                                                                  

consensus_6915#0      CGCCACGATGGGGGCTGTTCCCATCACATATATATTAACACGAAGGCGACGCACAGGATT 660
consensus_6915#1      ------------------------------------------------------------
                                                                                  

consensus_6915#0      AGTGCGATC 669
consensus_6915#1      ---------