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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1264 fasta sequence
[TGATGATGAAGAGGAAGCTAATATGGAAACAACATCATACGCTATTATTAAATTGAAGAATCATATGGCGCAGCAGCTCTTAGTTGTTCAGGGCATAGTTAAATTGTATGAGACACACAGGTGGTCTTTTTATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTCACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTCCCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTATCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAATTGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGGGCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTTGGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCAGTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTTATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGATATATTCCAGTCATCGATAGGCCCTATAATATCAACATAGTATATATATCATTTGTTCAGCGGTTGTACAATTTTTCCATTCCAATTTCATAAGGTATAGCTTATTGATAGTGGTTACATGAGAATATAAGATAAGAAAAAGGTACCAGCTTGGC-ACTGCT-GTAAATGACTGGCAGTTGGAACCTGCGCCTTCAGAATTCTGTTTGAAGCATCATT-TAACATCGACCCA-GGTGCCTGGAGATGGTCTTTTGAGGCTCATTTGACA-TTCTTTTTCTAACATACAT-TTCA-ATTCGATGGGGGTTCAGACTTCAGAGGCAACTGAATATTGGAAGTTAGAACAAGTCTTTCTGACTTCCAGGTCTGCTGAGGTTTTACAAAGAAATGGTTTGCTCACGAATGACAAAAATTTTGGCATGTAGCATTTTGTCCTTTGTATTACTTGTCTTTTGTATAGTATTTTCTTCAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATTTATATACTCGAATTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAATGAAAGTTGATTGGTAAAAAAAAAA]
[+] EMBL AK108424 [TGATGATGAAGAGGAAGCTAATATGGAAACAACATCATACGCTATTATTAAATTGAAGAATCATATGGCGCAGCAGCTCTTAGTTGTTCAGGGCATAGTTAAATTGTATGAGACACACAGGTGGTCTTTTTATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTCACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTCCCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTATCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAATTGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGGGCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTTGGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCAGTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTTATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGATATATTCCAGTCATCGATAGGCCCTATAATATCAACATAGTATATATATCATTTGTTCAGCGGTTGTACAATTTTTCCATTCCAATTTCATAAGGTATAGCTTATTGATAGTGGTTACATGAGAATATAAGATAAGAAAAAGGTACCAGCTTGGC ACTGCT GTAAATGACTGGCAGTTGGAACCTGCGCCTTCAGAATTCTGTTTGAAGCATCATT TAACATCGACCCA GGTGCCTGGAGATGGTCTTTTGAGGCTCATTTGACA TTCTTTTTCTAACATACAT TTCA ATTCGATGGGGGTTCAGACTTCAGAGGCAACTGAATATTGGAAGTTAGAACAAGTCTTTCTGACTTCCAGGTCTGCTGAGGTTTTACAAAGAAATGGTTTGCTCACGAATGACAAAAATTTTGGCATGTAGCATTTTGTCCTTTGTATTACTTGTCTTTTGTATAGTATTTTCTTCAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATTTATATACTCGAATTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAATGAAA ]
[+] EMBL CA753185 [ ATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTCACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTCCCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTATCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAATTGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGGGCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTTGGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCAGTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTTATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGATATATTCCAGTCATCGATAGGCNCTATAATATCAACATAGT ]
[+] EMBL BI812022 [ tATAT AGATAAGAAAAAGGTACCAGCTTGGCAACT CTGGTAAATGACT GCAGTTGGAACCTGCGCCTTCAGAATTCTGTTTGAAGCATCATTGTAACATCGACCCACGGTGCCTGGAGAT GCCTTTTGAGGCTCATTTGACACTTCTTTTTCTAACAGACATGGTCAGATTCGATGGGGGTTCAGACTTCAGAGGCAACTGAATATTGGAAGTTAG ACAAGTCTTTCTGACTTCCAGGTCTGCTGAGGTTTTACCAAGAAATGGTTTGCTCACGAATGACCAAAATTTTGGCATGTAGCATTTTGTCCTTTGTATTACTTGTCTTTTGTATAGTATTTTCTTCAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATTTATATACTCGAACTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAATGAAAGTTGATTGGTAAAAAAAAAA]
consensusID : consensus_6919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[GTGCCCTGCAGAATTCTGTGTGGAAGCATCATGTAACATGCGACCCAGGTCCCTGTAGATGCCTTTTGGAGGCTCATTGAGACATTCTTGTTGCGAAACATGACATTGCAATTCGATGGGGGTTCAGACTTTCAGAGCCAAACTGGAATATGGGAAGTTGAGAACAAGTCTTGTCGGACTTCCCAGGTCTGCTGAGGTTTGACCAAAGAAATGGGTTTGCTGCACGAATGGAACAAAAATTTTGGCATGTAGCACTTTTGGTCCTTTGTATTACTGGTCTTTTGTATAGTATTTTCTTCAAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTA]
[+] EMBL BI808328 [GTGCCCTGCAGAATTCTGTGTGGAAGCATCATGTAACATGCGACCCAGGTCCCTGTAGATGCCTTTTGGAGGCTCATTGAGACATTCTTGTTGCGAAACATGACATTGCAATTCGATGGGGGTTCAGACTTTCAGAGCCAAACTGGAATATGGGAAGTTGAGAACAAGTCTTGTCGGACTTCCCAGGTCTGCTGAGGTTTGACCAAAGAAATGGGTTTGCTGCACGAATGGAACAAAAATTTTGGCATGTAGCACTTTTGGTCCTTTGTATTACTGGTCTTTTGTATAGTATTTTCTTCAAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6919#0 TGATGATGAAGAGGAAGCTAATATGGAAACAACATCATACGCTATTATTAAATTGAAGAA 60
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 TCATATGGCGCAGCAGCTCTTAGTTGTTCAGGGCATAGTTAAATTGTATGAGACACACAG 120
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 GTGGTCTTTTTATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTC 180
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 ACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTC 240
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 CCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTA 300
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 TCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAAT 360
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 TGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGG 420
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 GCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTT 480
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 GGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCA 540
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 GTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTT 600
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 ATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGA 660
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 TATATTCCAGTCATCGATAGGCCCTATAATATCAACATAGTATATATATCATTTGTTCAG 720
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 CGGTTGTACAATTTTTCCATTCCAATTTCATAAGGTATAGCTTATTGATAGTGGTTACAT 780
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 GAGAATATAAGATAAGAAAAAGGTACCAGCTTGGCACTGCTGTAAATGACTGGCAGTTGG 840
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 AACCTGCGCCTT-CAGAATTCTGTTTG-AAGCATCATTTAACAT-CGACCCAGGTGCCTG 897
consensus_6919#1 -----GTGCCCTGCAGAATTCTGTGTGGAAGCATCATGTAACATGCGACCCAGGTCCCTG 55
* *** * *********** ** ********* ****** ********** ****
consensus_6919#0 GAGATGGTCTTTTGAGGCTCATTT-GACATTCTTTTTCT--AACAT-ACATTTCAATTCG 953
consensus_6919#1 TAGATGCCTTTTGGAGGCTCATTGAGACATTCTTGTTGCGAAACATGACATTGCAATTCG 115
***** *** ********** ********* ** ***** ***** *******
consensus_6919#0 ATGGGGGTTCAGACTT-CAGAGGCAACT--GAATATTGGAAGTT-AGAACAAGTCTT-TC 1008
consensus_6919#1 ATGGGGGTTCAGACTTTCAGAGCCAAACTGGAATATGGGAAGTTGAGAACAAGTCTTGTC 175
**************** ***** *** ****** ******* ************ **
consensus_6919#0 TGACTTCC-AGGTCTGCTGAGGTTTTAC-AAAGAAATGG-TTTGCT-CACGAATG--ACA 1062
consensus_6919#1 GGACTTCCCAGGTCTGCTGAGGTTTGACCAAAGAAATGGGTTTGCTGCACGAATGGAACA 235
******* **************** ** ********** ****** ******** ***
consensus_6919#0 AAAATTTTGGCATGTAGCATTTT--GTCCTTTGTATTACTTGTCTTTTGTATAGTATTTT 1120
consensus_6919#1 AAAATTTTGGCATGTAGCACTTTTGGTCCTTTGTATTACTGGTCTTTTGTATAGTATTTT 295
******************* *** *************** *******************
consensus_6919#0 CTTCA-GAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATT 1179
consensus_6919#1 CTTCAAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTA---- 351
***** **************************************************
consensus_6919#0 TATATACTCGAATTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAA 1239
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 TGAAAGTTGATTGGTAAAAAAAAAA 1264
consensus_6919#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||