cluster # 692

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Oryza sativa
cluster # 692 cluster # 692 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_692#0 length = 322 sequences # 1

consensus_692#1 length = 304 sequences # 1

consensusID : consensus_692#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [CTTGTCCGAAAGTTCAGAAATCACTCTACTTTTNTTGTNAGTTTCGCTTCCGGCCATGGCGTTGAACCCGCTCTTCACCGTNACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGGCCCGTCCTGCCGCCGGTGGAGCCGNCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGGCGTCGCGACCGCCGCGCTCACGCTCGCAACGNGCGCCGACAACCTCTACCTGGAGGGATTCCGGAGCAGCGACGGGAGGTGGT]

[+] EMBL C73224               [CTTGTCCGAAAGTTCAGAAATCACTCTACTTTTNTTGTNAGTTTCGCTTCCGGCCATGGCGTTGAACCCGCTCTTCACCGTNACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGGCCCGTCCTGCCGCCGGTGGAGCCGNCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGGCGTCGCGACCGCCGCGCTCACGCTCGCAACGNGCGCCGACAACCTCTACCTGGAGGGATTCCGGAGCAGCGACGGGAGGTGGT]




>consensus_692#0
CTTGTCCGAAAGTTCAGAAATCACTCTACTTTTNTTGTNAGTTTCGCTTCCGGCCATGGC
GTTGAACCCGCTCTTCACCGTNACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACTT
CATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGGCCCGT
CCTGCCGCCGGTGGAGCCGNCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGGC
GTCGCGACCGCCGCGCTCACGCTCGCAACGNGCGCCGACAACCTCTACCTGGAGGGATTC
CGGAGCAGCGACGGGAGGTGGT

consensusID : consensus_692#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [CAAAGCAAAAATTCCATTTTGTTTTGACTATTTCGCTTCCGGCCATGGCGTTGAACCCGCTCTTCACCGTGACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGCCCCGTCCTGCCGCCGGTGGAGCCGCCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGGCGTCGCCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCGGTCCTCTCGGCGGCCATGCTCGG]

[-] EMBL BI306712             [CAAAGCAAAAATTCCATTTTGTTTTGACTATTTCGCTTCCGGCCATGGCGTTGAACCCGCTCTTCACCGTGACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGCCCCGTCCTGCCGCCGGTGGAGCCGCCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGGCGTCGCCGACAACTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCGGTCCTCTCGGCGGCCATGCTCGG]




>consensus_692#1
CAAAGCAAAAATTCCATTTTGTTTTGACTATTTCGCTTCCGGCCATGGCGTTGAACCCGC
TCTTCACCGTGACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACTTCATCGCCGGCA
TCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGCCCCGTCCTGCCGCCGG
TGGAGCCGCCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGGCGTCGCCGACAA
CTACGGCGACTTCATCGCCGGCATCCGCAGCAGGGTGGCCGGTCCTCTCGGCGGCCATGC
TCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_692#0      CTTGTCCGAAAGTTCAGAAATCACTCTACTTT-TNTTGTNAGTTTCGCTTCCGGCCATGG 59
consensus_692#1      ------------CAAAGCAAAAATTCCATTTTGTTTTGACTATTTCGCTTCCGGCCATGG 48
                                    ** **  * ** * *** * ***    ******************

consensus_692#0      CGTTGAACCCGCTCTTCACCGTNACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACT 119
consensus_692#1      CGTTGAACCCGCTCTTCACCGTGACGTTCGACGTGAGCAGCGGCGACAACTACGGCGACT 108
                     ********************** *************************************

consensus_692#0      TCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGGCCCG 179
consensus_692#1      TCATCGCCGGCATCCGCAGCAGGGTGGCCAACCCGAGGCACTTCTCCCGCAACCGCCCCG 168
                     ******************************************************* ****

consensus_692#0      TCCTGCCGCCGGTGGAGCCGNCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGG 239
consensus_692#1      TCCTGCCGCCGGTGGAGCCGCCGCCGCCGCCGCGCCGCTGGTTCCACGTCGTGCTCCGGG 228
                     ******************** ***************************************

consensus_692#0      CGTCGC-GACCGCCGCGCTCACGCTCGCAACGNGCGCCGACAACCTCTACCTGGAGGGAT 298
consensus_692#1      CGTCGCCGACAACTACGGCGAC-TTCATCGCCGGCATCCGCAGCA---GGGTGGCCGGTC 284
                     ****** ***  *  **   **  **    *  **  *  ** *       ***  **  

consensus_692#0      TCCGGAGCAGCGACGGGAGGTGGT 322
consensus_692#1      CTCTCGGCGGCCATGCTCGG---- 304
                       *   ** ** * *   **