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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1774 fasta sequence
[TCCGGCCACGCCACAATGTCCACCACCACCACCACCACCGTCACAGAACCCGACAATGCCGAAGCCTCGCCATCGCCGTCGCTGCTGTACCCGGCGGCGGCGGAGGCGTCGGCCGCGGTCGCCGCCCTCCTCGCGGACCTCCGGCTGGGCCACGCGGCGCACACCCGCGTCTCCGCCACGCGGCTGTCCGGCGGCGAGCGGCGTCGCGTGTCCATCGGGCTCGCCCTCCTCCGGGACCCCGGGGTCCTCCTCCTCGACGAGCCCACCTCCGGCCTCGACTCCTCCTCCGCGCACGTCGTCGTCGGCTGCCTGCGCGCCGTCGCGGCCGCGCGCGGCACGACGGTGGTGCTCTCCATCCACCAGCCCAGCTCGCGCCTCCTCTCCGCCGTGGACTCCCTCCTCCTCCTCTCCCGTGGCGCCGTCGTGCACCACGGCTCCGTCGACTCCCTCGACGCCGCGCTCCTCTCCCACGGCCTCGCCGTGCCGGCGCAGCTCAACCCGCTGGAGTTTGCCCTCGAGGTACTCGACCAGATGCCCCACCCGTCCGCCTCCTCCCCTGAGCCCAAGACGACGGAGGAGCTCGCCGCCGTGACGTCCTCCAAGTCGTCGTCGTCGTCAACCTCGCCGTGCTCGAGGATACACGAGGTGGTGGTCCTGTACAAGCGGGCATGGAAGGTGGTGTACCGAAGCAAGCAACTGCTGCTGACCAACTTCCTGGAGTCGGTGGTGGTGGGGACGCTGCTGGGGAGCATCTACATCAACGCCGGCGACGGCGAGGGCGGCGCGCACAAGCGGCTGGGGCTGTTCGCCTTCACGCTGACGTTCCTCCTGACGTCCACGACGGAGACGCTGCCGACGTTCGTGTCGGAGCGGCCGATCGTGCTGGCGGAGACGGCGTC-GGGGCTGTACAGGCTGTCGTCGCACGCGGCGGCGGCGACGCT-GGTGTTCCTCCCGTACCTCCTGGCGGTGGCGCTCCTCTACTCCGCCTGCGTCTACCTCCTCGTCGGCCTCTGCGCGTCGGCGGCGGCGTTCGCGGCGTTCGTGATGGTGGTGTGGGCGGTGGTGCTGACGGCGAACTCCTTCGTGCTGTTCGTGAGCTCGTTCGCGCCGGACTACATCGCCGGGATGTCGCTGGTGTCGGTGTCCCTCGCCGGCTTCTTCCTCTTCTCCGGCTACTTCCTGTCCAGGGGGAGCATGCCGCCGTACTGGGTGTTCATGCACTACGTCTCCCCGTACAAGTACGCCCTCGACGCCCTCCTCGCCAACGAGTACACCTGCGCCGCCACCCGCTGCTTCGGCGTCGCCGGCCCCGCCGCCGGCGACTGCTCCGAGACCGGCGCCGACGTGCTGGCGGAGAAGGGGCTCACGGCCAAGGAGCGGTGGACCGGGGTGCAGGTGCTCTTCGGCTTCTTCCTCCTCTACAGAGTTCTCTACTGGGTGGTGCTCAGCCGCCGAGCCGCCAGGGCCAAGAGGTGACCCATCCATCGTCACCTCCAGCTCAGGCGACGGCGAGCGGCCGCACCGTACGTACGTACGTGTGAACGCGTGCATGGAGACGAAGTGGGGCCCATGCATGCGCATGCAAGTCAAGGTATGACGTCAACAATGGCGTAGACAAGGTGGTGATCGAGTTAATTAACTGGTAATTAAGCTGCTGCTGCTGCTATACTGATAAGTGATGATGTGTATATTTTATGAACATAAAAAAACGAGCCTTTTATATGTGTAATGATGAGTGGTTGATAGTGCGATCTTGACTTGAAAATCACGATCG]
[+] EMBL AK105826 [TCCGGCCACGCCACAATGTCCACCACCACCACCACCACCGTCACAGAACCCGACAATGCCGAAGCCTCGCCATCGCCGTCGCTGCTGTACCCGGCGGCGGCGGAGGCGTCGGCCGCGGTCGCCGCCCTCCTCGCGGACCTCCGGCTGGGCCACGCGGCGCACACCCGCGTCTCCGCCACGCGGCTGTCCGGCGGCGAGCGGCGTCGCGTGTCCATCGGGCTCGCCCTCCTCCGGGACCCCGGGGTCCTCCTCCTCGACGAGCCCACCTCCGGCCTCGACTCCTCCTCCGCGCACGTCGTCGTCGGCTGCCTGCGCGCCGTCGCGGCCGCGCGCGGCACGACGGTGGTGCTCTCCATCCACCAGCCCAGCTCGCGCCTCCTCTCCGCCGTGGACTCCCTCCTCCTCCTCTCCCGTGGCGCCGTCGTGCACCACGGCTCCGTCGACTCCCTCGACGCCGCGCTCCTCTCCCACGGCCTCGCCGTGCCGGCGCAGCTCAACCCGCTGGAGTTTGCCCTCGAGGTACTCGACCAGATGCCCCACCCGTCCGCCTCCTCCCCTGAGCCCAAGACGACGGAGGAGCTCGCCGCCGTGACGTCCTCCAAGTCGTCGTCGTCGTCAACCTCGCCGTGCTCGAGGATACACGAGGTGGTGGTCCTGTACAAGCGGGCATGGAAGGTGGTGTACCGAAGCAAGCAACTGCTGCTGACCAACTTCCTGGAGTCGGTGGTGGTGGGGACGCTGCTGGGGAGCATCTACATCAACGCCGGCGACGGCGAGGGCGGCGCGCACAAGCGGCTGGGGCTGTTCGCCTTCACGCTGACGTTCCTCCTGACGTCCACGACGGAGACGCTGCCGACGTTCGTGTCGGAGCGGCCGATCGTGCTGGCGGAGACGGCGTC GGGGCTGTACAGGCTGTCGTCGCACGCGGCGGCGGCGACGCT GGTGTTCCTCCCGTACCTCCTGGCGGTGGCGCTCCTCTACTCCGCCTGCGTCTACCTCCTCGTCGGCCTCTGCGCGTCGGCGGCGGCGTTCGCGGCGTTCGTGATGGTGGTGTGGGCGGTGGTGCTGACGGCGAACTCCTTCGTGCTGTTCGTGAGCTCGTTCGCGCCGGACTACATCGCCGGGATGTCGCTGGTGTCGGTGTCCCTCGCCGGCTTCTTCCTCTTCTCCGGCTACTTCCTGTCCAGGGGGAGCATGCCGCCGTACTGGGTGTTCATGCACTACGTCTCCCCGTACAAGTACGCCCTCGACGCCCTCCTCGCCAACGAGTACACCTGCGCCGCCACCCGCTGCTTCGGCGTCGCCGGCCCCGCCGCCGGCGACTGCTCCGAGACCGGCGCCGACGTGCTGGCGGAGAAGGGGCTCACGGCCAAGGAGCGGTGGACCGGGGTGCAGGTGCTCTTCGGCTTCTTCCTCCTCTACAGAGTTCTCTACTGGGTGGTGCTCAGCCGCCGAGCCGCCAGGGCCAAGAGGTGACCCATCCATCGTCACCTCCAGCTCAGGCGACGGCGAGCGGCCGCACCGTACGTACGTACGTGTGAACGCGTGCATGGAGACGAAGTGGGGCCCATGCATGCGCATGCAAGTCAAGGTATGACGTCAACAATGGCGTAGACAAGGTGGTGATCGAGTTAATTAACTGGTAATTAAGCTGCTGCTGCTGCTATACTGATAAGTGATGATGTGTATATTTTATGAACATAAAAAAACGAGCCTTTTATATGTGTAATGATGAGTGGTTGATAGTGCGATCTTGACTTGAAAATCACGATCG]
[+] EMBL AU033292 [ TGGTCCTGTACAAGCGGGCATGGAAGGTGGTGTACCGAAGCAAGCAACTNCTGCTGACCAACTTCCTGGAGTCGGTGGTGGTGGGGACGCTGCTGGGGAGCATCTACATCAACGCCGGCNACGGANGNNGCGGCGCGCACAAGCGGCTGGGGCTGTTCGCCTTCACGCTGACGTTCCTCCTGACGTCCACGACGGAGACGCTGCCGACGTTCGTTTCGGAGCGGCCGATCGTNCTGGCGGAGACGGCGTCGGGGGCTGTACAGGNTGTCGTCGCACGCGGCGGCGGCNACGCTGGGTNTTCCTCCCGTACCTNCTGGCGGTG ]
[+] EMBL AU225581 [ gccgctCGAGTACACCTGCGCCGCCACCCGCTGCTTCGGCGTCGCCGGCCCCGCCGCCGGCGACTGCTCCGAGACCGGCGCCGACGTGCTGGCGGAGAAGGGGCTCACGGCCAAGGAGCGGTGGACCGGGGTGCAGGTGCTCTTCGGCTTCTTCCTCCTCTACAGAGTTCTCTACTGGGTGGTGCTCAGCCGCCGAGCCGCCAGGGCCAAGAGGTGACCCATCCATCGTCACCTCCAGCTCAGGCGACGGCGAGCGGCCGCACCGTACGTACGTACGTGTGAACGCGTGCATGGAGACGAAGTGGGGCCCATGCATGCGCATGCAAGTCAAGGTATGACGTCAACAATGGCGTAGACAAGGTGGTGATCGAGTTAATTAACTGGTAATAAAGCTGCTGCTGCTGCTATACTGATAAGTGATGATGTGTATATTTTAgcgg ]
consensusID : consensus_6922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence
[TGGTCCTGTACAAGCGGGCATGGAAGGTGGTGTACCGAAGCAANCAACTNCTGNTGACCAACTTNNTGGANTNGGTGGTNGNGNGGACNATTNTTNATCNNATCNAAANNACNGNCNCCATCGGNANGTTAGCCNTNAATAGTAGNCGTNGNNGNANNCNANTTANTNGTCTNGNCGCTACTANNGATCATCTGGNCNCNGTTCANTTTTNCGTNGGGTGACGTNCTTTNNTTANAGGATTCNNNTCTGCGCTCTNTTGCTNCTGGCTCTGCGAGCTNGTGCTTGCGACNNGTAGAAGGGNTATTTATATATATANTNTATTTNANATTTTNTATNTTNNTTTNNANANNTNTNTGNCCTNNTNCNNNTGTTANATACTNNNGGTTTTTTTTNNTTTTTTNGCGTNGTGGNCGTTTTNCCNTNNTNNTNNTTTTGNTTANGTTTNTNTCTTNNTNTATTTTTATNTTTGGGTAGTTTATTNNTNTTATTGGACTTTNTATATNGTNTNTNGNNATTGTNTTTTTTNGTANTTNTTTNGGNGTNTTNTAGATNNTTNTCNTTNTNNTNNNTNATTGTTNGTTTTTTNTTN]
[+] EMBL AU070631 [TGGTCCTGTACAAGCGGGCATGGAAGGTGGTGTACCGAAGCAANCAACTNCTGNTGACCAACTTNNTGGANTNGGTGGTNGNGNGGACNATTNTTNATCNNATCNAAANNACNGNCNCCATCGGNANGTTAGCCNTNAATAGTAGNCGTNGNNGNANNCNANTTANTNGTCTNGNCGCTACTANNGATCATCTGGNCNCNGTTCANTTTTNCGTNGGGTGACGTNCTTTNNTTANAGGATTCNNNTCTGCGCTCTNTTGCTNCTGGCTCTGCGAGCTNGTGCTTGCGACNNGTAGAAGGGNTATTTATATATATANTNTATTTNANATTTTNTATNTTNNTTTNNANANNTNTNTGNCCTNNTNCNNNTGTTANATACTNNNGGTTTTTTTTNNTTTTTTNGCGTNGTGGNCGTTTTNCCNTNNTNNTNNTTTTGNTTANGTTTNTNTCTTNNTNTATTTTTATNTTTGGGTAGTTTATTNNTNTTATTGGACTTTNTATATNGTNTNTNGNNATTGTNTTTTTTNGTANTTNTTTNGGNGTNTTNTAGATNNTTNTCNTTNTNNTNNNTNATTGTTNGTTTTTTNTTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6922#0 TCCGGCCACGCCACAATGTCCACCACCACCACCACCACCGTCACAGAACCCGACAATGCC 60
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 GAAGCCTCGCCATCGCCGTCGCTGCTGTACCCGGCGGCGGCGGAGGCGTCGGCCGCGGTC 120
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 GCCGCCCTCCTCGCGGACCTCCGGCTGGGCCACGCGGCGCACACCCGCGTCTCCGCCACG 180
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 CGGCTGTCCGGCGGCGAGCGGCGTCGCGTGTCCATCGGGCTCGCCCTCCTCCGGGACCCC 240
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 GGGGTCCTCCTCCTCGACGAGCCCACCTCCGGCCTCGACTCCTCCTCCGCGCACGTCGTC 300
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 GTCGGCTGCCTGCGCGCCGTCGCGGCCGCGCGCGGCACGACGGTGGTGCTCTCCATCCAC 360
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 CAGCCCAGCTCGCGCCTCCTCTCCGCCGTGGACTCCCTCCTCCTCCTCTCCCGTGGCGCC 420
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 GTCGTGCACCACGGCTCCGTCGACTCCCTCGACGCCGCGCTCCTCTCCCACGGCCTCGCC 480
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 GTGCCGGCGCAGCTCAACCCGCTGGAGTTTGCCCTCGAGGTACTCGACCAGATGCCCCAC 540
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 CCGTCCGCCTCCTCCCCTGAGCCCAAGACGACGGAGGAGCTCGCCGCCGTGACGTCCTCC 600
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 AAGTCGTCGTCGTCGTCAACCTCGCCGTGCTCGAGGATACACGAGGTGGTGGTCCTGTAC 660
consensus_6922#1 -------------------------------------------------TGGTCCTGTAC 11
***********
consensus_6922#0 AAGCGGGCATGGAAGGTGGTGTACCGAAGCAAGCAACTGCTGCTGACCAACTTCCTGGAG 720
consensus_6922#1 AAGCGGGCATGGAAGGTGGTGTACCGAAGCAANCAACTNCTGNTGACCAACTTNNTGGAN 71
******************************** ***** *** ********** ****
consensus_6922#0 TCGGTGGTGGTGGGGACGCTGCTGGGGAGCATCTACATCAACGCCGGCGACGGCGAGGGC 780
consensus_6922#1 TNGGTGGTNGNGNGGACNATTNTTNATCNNATCNAAANNACNGNCNCCATCGGN-ANGTT 130
* ****** * * **** * * *** * * * * * * *** * *
consensus_6922#0 GGCGCGCACAAGCGGCTGGGGCTGTTCGCCTTCACGCTGACGTTCCTCCTGACGTCCACG 840
consensus_6922#1 AGCCNTNAATAGTAGNCGTNGNNGNANNCNANT-TANTNGTCTNGNCGCTACTANNGATC 189
** * ** * * * * * * * ** *
consensus_6922#0 ACGGAGACGCTGCCGACGTTCGTGTCGGAGCGGCCGATCGTGCTGGCGGAGACGGCGTCG 900
consensus_6922#1 ATCTGGNCNCNGTTCANTTTTNCGTNGG-GTGACGTNCTTTNNTTANAGGATTCNNNTCT 248
* * * * * * ** ** ** * * * * * * **
consensus_6922#0 GGGCTGTACAGGCTGTCGTCGCACGCGGCGGCGGCGACG-CTGGTGTTCCTCCCGTACCT 959
consensus_6922#1 GCGCTCTNTTGCTNCTGGCTCTGCGAGCTNGTGCTTGCGACNNGTAGAAGGGNTATTTAT 308
* *** * * * * ** * * * ** * ** * *
consensus_6922#0 CCTGGCGGTGGCGCTCCTCTACTCCGCCTGCGTCTACCTCCTCGTCGGCCTCTGCGCGTC 1019
consensus_6922#1 ATATATANTNTATTTNANATTTTNTATNTTNNTTTNNANANNTNTNTGNCCTNNTNCNNN 368
* * * * * * * * * * *
consensus_6922#0 GGCGGCGGCGTTCGCGGCGTTCGTGATGGTGGTGTGGGCGGTGGTGCTGACGGCGAACTC 1079
consensus_6922#1 TGTTANATACTNNNGGTTTTTTTTNNT--TTTTTNGCGTNGTGGNCGTTTTNCCNTNNTN 426
* * * ** * * * * * * **** * * *
consensus_6922#0 CTTCGTGCTGTTCGTGAGCTCGTTCGCGCCGGACTACATCGCCGGGATGTCGCTGGTGTC 1139
consensus_6922#1 NTNNTT-TTGNTTANGTTTNTNTCTTNNTNTATTTTTATNTTTGGGTAGTT-----TATT 480
* * ** * * * * ** *** ** * *
consensus_6922#0 GGTGTCCCTCGCCGGCTTCTTCCTCTTCTCCGGCTACT-TCCTGTCCAGGGGGAGCATGC 1198
consensus_6922#1 NNTNTTATTGGAC--TTTNTATATNGTNTNTNGNNATTGTNTTTTTTNGTANTTNTTTNG 538
* * * * * ** * * * * * * * * * * * *
consensus_6922#0 CGCCGTACTGGGTGTTCATGCACTACGTCTCCCCGTACAAGTACGCCCTCGACGCCCTCC 1258
consensus_6922#1 GNGTNTTNTAGATNNTTNTCNTTNTNNTNNNTNATTGTTNGTTTTTTNTTN--------- 589
* * * * * * * * ** *
consensus_6922#0 TCGCCAACGAGTACACCTGCGCCGCCACCCGCTGCTTCGGCGTCGCCGGCCCCGCCGCCG 1318
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 GCGACTGCTCCGAGACCGGCGCCGACGTGCTGGCGGAGAAGGGGCTCACGGCCAAGGAGC 1378
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 GGTGGACCGGGGTGCAGGTGCTCTTCGGCTTCTTCCTCCTCTACAGAGTTCTCTACTGGG 1438
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 TGGTGCTCAGCCGCCGAGCCGCCAGGGCCAAGAGGTGACCCATCCATCGTCACCTCCAGC 1498
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 TCAGGCGACGGCGAGCGGCCGCACCGTACGTACGTACGTGTGAACGCGTGCATGGAGACG 1558
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 AAGTGGGGCCCATGCATGCGCATGCAAGTCAAGGTATGACGTCAACAATGGCGTAGACAA 1618
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 GGTGGTGATCGAGTTAATTAACTGGTAATTAAGCTGCTGCTGCTGCTATACTGATAAGTG 1678
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 ATGATGTGTATATTTTATGAACATAAAAAAACGAGCCTTTTATATGTGTAATGATGAGTG 1738
consensus_6922#1 ------------------------------------------------------------
consensus_6922#0 GTTGATAGTGCGATCTTGACTTGAAAATCACGATCG 1774
consensus_6922#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||