|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 843 fasta sequence
[AATATGAAGTCCTCCTAGCTCAATATAATGCTGAACGCAATACATATGCCCAGATAAATTCTCGAACCAAATCATTTGGCCCAATTTCTTCACTATTACTCAAAAGCCATCTAACTTTACACCTATTGCAACTGGAATCCTCCACAGTCCCTTGAGCTGTCATCATCAATTCCTCAACCCCACATTCAGCAGAGTGTGCATAGCAGGCGGCCCTATCCACCGGGAATAGCTGATGAGGCACACAAGAATAGAAGAATCTAGCTTGCATCGTCTATCGCAATCACCTCAATTATTGAAACATGAAGCCAACATTGCCATAAAACGAGAGAGACGCTCTTGCTGTGTCATTTTCATACAAGAAATAATTGCTGATCGGCGTGTGCATATTGGCACATGGTGTTAACCATACAACAACATGAAGATCCATTGAGCACACCAAAACAGAGATGGGTTTTTATTTCTACTCTCGATTTTGATATACTAGTAATCGTGCACGTGCAATGCACGTTATTCACAATATGTATTGCACACAGTCAAATTCAAGATGCAAAATATGAAAACAAATAAGATTTTCTTACTGCAATGATTGAGTAAGACTATTACATTTTTTAGTTAAAAGACAATTTGATAAGCATGCATCAGTGTAGAAAATCTTCCTACCAACTTAAGTGAAATAAACTTCAGAGAAATGATACTATACTATATCTTGGAAGTCTTTCTTTATTGTTTACAAATAAAATAACCAGAATGAACTTAAGGTGGGAATTTGCACNCATAAGCAATAACAATAAAAATGACAAAGAACAGGGTGAATAACTATGACCCGTATATATTTAAATTCAC]
[+] EMBL CB627051 [AATATGAAGTCCTCCTAGCTCAATATAATGCTGAACGCAATACATATGCCCAGATAAATTCTCGAACCAAATCATTTGGCCCAATTTCTTCACTATTACTCAAAAGCCATCTAACTTTACACCTATTGCAACTGGAATCCTCCACAGTCCCTTGAGCTGTCATCATCAATTCCTCAACCCCACATTCAGCAGAGTGTGCATAGCAGGCGGCCCTATCCACCGGGAATAGCTGATGAGGCACACAAGAATAGAAGAATCTAGCTTGCATCGTCTATCGCAATCACCTCAATTATTGAAACATGAAGCCAACATTGCCATAAAACGAGAGAGACGCTCTTGCTGTGTCATTTTCATACAAGAAATAATTGCTGATCGGCGTGTGCATATTGGCACATGGTGTTAACCATACAACAACATGAAGATCCATTGAGCACACCAAAACAGAGATGGGTTTTTATTTCTACTCTCGATTTTGATATACTAGTAATCGTGCACGTGCAATGCACGTTATTCACAATATGTATTGCACACAGTCAAATTCAAGATGCAAAATATGAAAACAAATAAGATTTTCTTACTGCAATGATTGAGTAAGACTATTACATTTTTTAGTTAAAAGACAATTTGATAAGCATGCATCAGTGTAGAAAATCTTCCTACCAACTTAAGTGAAATAAACTTCAGAGAAATGATACTATACTATATCTTGGAAGTCTTTCTTTATTGTTTACAAATAAAATAACCAGAATGAACTTAAGGTGGGAATTTGCACNCATAAGCAATAACAATAAAAATGACAAAGAACAGGGTGAATAACTATGACCCGTATATATTTAAATTCAC]
consensusID : consensus_6930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence
[TTTGCAAGACCCTATGAGATTCACTACCCTGCAATTGCTTCACAGGTTAGAGGCCGCTGATCGTCCTGCCCGGTGCTGCTCCTCAATCTCCGCAGTCGCGTCCTCAACCCTTGCAGCTGATCCACCGGCCACGGTTGCATCTGGGCTTCCTCCAATAGAGGTAAATCTCTGTCGCTATTGCTCACTGCTCTTGATTTGGCGAATTGTAGTCGGTTGGAATCTGTTCTATTGTTGAATGACCGATGCTTCTCTTCGCGTGAGCTGAAGGTGATCAACAAAATCCTGCTTAGGTACTGTTACTTCTCTTGCAGACTATTTGATCCGTTGTGTGTGTGTTTTTTTTTTGTTAAATTCATGGCATAGACCAATTTCCAAACATAAGAAAATAGTAAGCAAGCATTTTGACTGTTTTACGTAGTTCACACTCTTTTTTGCAGGTAAGCAAGAATTAATCCTGACTGGAGTATATGACAGGACCTCTCATACAACATCTATATCTATATCTATACTAATATAAAAATAATATAAAAAGGAGGAGTTGCCCCCCTCCAATCGTACAGGCCAAATCACTTGGATCAATCCGTACCGTCCATCTGCCGCATCCAATTCCAGGTCATTCAGAAATTCATAGATAGCTCCAAGTTGAAGAGAGACCATCTTATTCATGCATGACAAAAGGATTTTATCTGTCTTCATCCCGGATGTGGTAAGGTGATTACATTTATCCCTTTATTCAATCATGGCTTCAAATAATATCTATANGGCGACTGCACCTTTGCATTTACTTCTCCATA]
[+] EMBL CB627050 [TTTGCAAGACCCTATGAGATTCACTACCCTGCAATTGCTTCACAGGTTAGAGGCCGCTGATCGTCCTGCCCGGTGCTGCTCCTCAATCTCCGCAGTCGCGTCCTCAACCCTTGCAGCTGATCCACCGGCCACGGTTGCATCTGGGCTTCCTCCAATAGAGGTAAATCTCTGTCGCTATTGCTCACTGCTCTTGATTTGGCGAATTGTAGTCGGTTGGAATCTGTTCTATTGTTGAATGACCGATGCTTCTCTTCGCGTGAGCTGAAGGTGATCAACAAAATCCTGCTTAGGTACTGTTACTTCTCTTGCAGACTATTTGATCCGTTGTGTGTGTGTTTTTTTTTTGTTAAATTCATGGCATAGACCAATTTCCAAACATAAGAAAATAGTAAGCAAGCATTTTGACTGTTTTACGTAGTTCACACTCTTTTTTGCAGGTAAGCAAGAATTAATCCTGACTGGAGTATATGACAGGACCTCTCATACAACATCTATATCTATATCTATACTAATATAAAAATAATATAAAAAGGAGGAGTTGCCCCCCTCCAATCGTACAGGCCAAATCACTTGGATCAATCCGTACCGTCCATCTGCCGCATCCAATTCCAGGTCATTCAGAAATTCATAGATAGCTCCAAGTTGAAGAGAGACCATCTTATTCATGCATGACAAAAGGATTTTATCTGTCTTCATCCCGGATGTGGTAAGGTGATTACATTTATCCCTTTATTCAATCATGGCTTCAAATAATATCTATANGGCGACTGCACCTTTGCATTTACTTCTCCATA]
consensusID : consensus_6930#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[AATGACATATGCCCAGATAAATTCTGCGAACCAAATCATTTGGCCCAATTTCTTCACTATTACTCAAAAGCCATCTAACTTTACACCTATGGCAACGTGGAATCCTCCACAGTCCCTTGAGCTGTCATCATCAATTCCTCAACCCCACATTCAGCAGAGTGTGCATAGGAGGCGGGCCCTATCCACGGGAATAGCTGATGAGGCACACCAGGAATAGAACGAATCTAGCTTGCATCGTCTATCGCAAATCACCCTCAATTATTGAAACATGAAGCCAACATTTGCCATAAAACCGAGAGAGACGCTCTTGCGTGTGTCATTTTCATGCAAGAAATAATGCGTGATCGGGTGTGCATATGGACATGGGGTTAACCATACAAGCAACATGAAGATCCATGTGAGCACACCAAAACAGAGATGGGTTTTGATTGTCTACTCTCGATTTGATATACTAGTAATCGTGCACGTGCAATGCACTTATTCACGCAATGTATGTGCCCACATCACATTCACAGATGCCAAAATATGGACAACGAATAGGATTCTTACTGGATGATTGCGTCAGCCCTATACCT]
[-] EMBL BI807872 [AATGACATATGCCCAGATAAATTCTGCGAACCAAATCATTTGGCCCAATTTCTTCACTATTACTCAAAAGCCATCTAACTTTACACCTATGGCAACGTGGAATCCTCCACAGTCCCTTGAGCTGTCATCATCAATTCCTCAACCCCACATTCAGCAGAGTGTGCATAGGAGGCGGGCCCTATCCACGGGAATAGCTGATGAGGCACACCAGGAATAGAACGAATCTAGCTTGCATCGTCTATCGCAAATCACCCTCAATTATTGAAACATGAAGCCAACATTTGCCATAAAACCGAGAGAGACGCTCTTGCGTGTGTCATTTTCATGCAAGAAATAATGCGTGATCGGGTGTGCATATGGACATGGGGTTAACCATACAAGCAACATGAAGATCCATGTGAGCACACCAAAACAGAGATGGGTTTTGATTGTCTACTCTCGATTTGATATACTAGTAATCGTGCACGTGCAATGCACTTATTCACGCAATGTATGTGCCCACATCACATTCACAGATGCCAAAATATGGACAACGAATAGGATTCTTACTGGATGATTGCGTCAGCCCTATACCT]
consensusID : consensus_6930#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[TTTTTTTTTCCAAATCAAGCTGCAGTGAATATGAAGTCCTCCTAGCTCAATATAATGCTGAACGCAATACATATGCCCAGATAAATTCTCGAACCAAATCATTGGCCCAATTTCTTCACTATTACTCAAAAGCCATCTAACTTTACACCTATGCAACTGGAATCCTCCACAGTCCCTTGAGCTGTCATCATCAATTCCTCAACCCCACATTCAGCAGAGTGTGCATAGCAGGCGGCCACATCCGGGATGAAGACAGATAAAATCCTTTGTCATGCATGAATAAGATGGTCTCTCTTCAACTTGGAGCTATCTATGAATTTCTGAATGACCTGGAATTGGATGCGGCACGATGGACGGTACGGATTGATCCAAGTGATTGGGCCTCTATTGGCGGACGCCCAGATGCAACCGTGGCCGGCTGGATCAGTGCCAAGGGTTGAGGA]
[-] EMBL BI813276 [TTTTTTTTTCCAAATCAAGCTGCAGTGAATATGAAGTCCTCCTAGCTCAATATAATGCTGAACGCAATACATATGCCCAGATAAATTCTCGAACCAAATCATTGGCCCAATTTCTTCACTATTACTCAAAAGCCATCTAACTTTACACCTATGCAACTGGAATCCTCCACAGTCCCTTGAGCTGTCATCATCAATTCCTCAACCCCACATTCAGCAGAGTGTGCATAGCAGGCGGCCACATCCGGGATGAAGACAGATAAAATCCTTTGTCATGCATGAATAAGATGGTCTCTCTTCAACTTGGAGCTATCTATGAATTTCTGAATGACCTGGAATTGGATGCGGCACGATGGACGGTACGGATTGATCCAAGTGATTGGGCCTCTATTGGCGGACGCCCAGATGCAACCGTGGCCGGCTGGATCAGTGCCAAGGGTTGAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6930#0 ---------------------------AATATGAAGTCCTCCTAGCTCAATATAATGCTG 33
consensus_6930#2 ------------------------------------------------------------
consensus_6930#3 TTTTTTTTTCCAAATCAAGCTGCAGTGAATATGAAGTCCTCCTAGCTCAATATAATGCTG 60
consensus_6930#1 TTTGCAAGACCCTATGAGATTCACTACCCTGCAATTGCTTCACAGGTTAG-AGGCCGCTG 59
consensus_6930#0 AACGCAAT-ACATATGCCCAGATAAATTCT-CG-AACCAAATCATTTGGCCCAATTTCTT 90
consensus_6930#2 -----AATGACATATGCCCAGATAAATTCTGCG-AACCAAATCATTTGGCCCAATTTCTT 54
consensus_6930#3 AACGCAAT-ACATATGCCCAGATAAATTCT-CG-AACCAAATCATT-GGCCCAATTTCTT 116
consensus_6930#1 ATCGTCCTGCCCGGTGCTGCTCCTCAATCTCCGCAGTCGCGTCCTCAACCCTTGCAGCTG 119
* * *** * *** ** * * ** * ** **
consensus_6930#0 CACTATTACTCAAAAGC-CATCTAACTTTACACCTATTGCAAC----------TGGAATC 139
consensus_6930#2 CACTATTACTCAAAAGC-CATCTAACTTTACACCTATGGCAACG---------TGGAATC 104
consensus_6930#3 CACTATTACTCAAAAGC-CATCTAACTTTACACCTAT-GCAAC----------TGGAATC 164
consensus_6930#1 ATCCACCGGCCACGGTTGCATCTGGGCTTCCTCCAATAGAGGTAAATCTCTGTCGCTATT 179
* * ** ***** ** * ** ** * * **
consensus_6930#0 CTCCACAGTCCCTTGAGCTGTC--ATCATCAATTCCTCAACCCCACATT-CAGCAGAGTG 196
consensus_6930#2 CTCCACAGTCCCTTGAGCTGTC--ATCATCAATTCCTCAACCCCACATT-CAGCAGAGTG 161
consensus_6930#3 CTCCACAGTCCCTTGAGCTGTC--ATCATCAATTCCTCAACCCCACATT-CAGCAGAGTG 221
consensus_6930#1 GCTCACTG-CTCTTGATTTGGCGAATTGTAGTCGGTTGGAATCTGTTCTATTGTTGAATG 238
*** * * ***** ** * ** * * * * * * ** **
consensus_6930#0 TGCATAGCAGGCGG-CCCTATCCACCGGGAATAGCTGATGAGGCACAC-AAGAATAGAA- 253
consensus_6930#2 TGCATAGGAGGCGGGCCCTATCCAC-GGGAATAGCTGATGAGGCACACCAGGAATAGAAC 220
consensus_6930#3 TGCATAGCAGGCGG-CCACATCCGG-GATGAAGACAGATAAAATCCTT------TGTCAT 273
consensus_6930#1 ACCGATGCTTCTCT-TCGCGTGAGCTGAAGGTGATCAACAAAATCCTGCTTAGGTACTGT 297
* * * * * * * * *
consensus_6930#0 -GAATCTAGCTTGCATCGTCTATCGCAA-TCACC-TCAATTATTGAAACATGAAGCCAAC 310
consensus_6930#2 -GAATCTAGCTTGCATCGTCTATCGCAAATCACCCTCAATTATTGAAACATGAAGCCAAC 279
consensus_6930#3 -GCA--TGAATAAGATGGTCTCTCTTCA---ACTTGGAGCTATC----TATGAATTTCTG 323
consensus_6930#1 TACTTCTCTTGCAGACTATTTGATCCGTTGTGTGTGTGTTTTTTTTTTGTTAAATTCATG 357
* * * * * * * **
consensus_6930#0 A-TT-GCCATAAAAC-GAGAGAGACGCTCTTGC-TGTGT-CATTTTCA----TACAAGAA 361
consensus_6930#2 A-TTTGCCATAAAACCGAGAGAGACGCTCTTGCGTGTGT-CATTTTCA----TGCAAGAA 333
consensus_6930#3 A-AT-GACCTGGAATTGGATGCGGCACGATGGACGGTA--CGGATTGA----TCCAAGTG 375
consensus_6930#1 GCATAGACCAATTTCCAAACATAAGAAAATAGTAAGCAAGCATTTTGACTGTTTTACGTA 417
* * * * * * * ** * * * *
consensus_6930#0 ATAATTGCTG--ATCGGCGTGTGCATATTGGCACATGGTGTTAACCATACAA-CAACATG 418
consensus_6930#2 ATAATGCGTG--ATCGG-GTGTGCATAT--GGACATGGGGTTAACCATACAAGCAACATG 388
consensus_6930#3 ATTGGGCCTCT-ATTGGCGGACGCCCAGATGCAACCGTGGCCGGCTGGATCAGTGCCA-- 432
consensus_6930#1 GTTCACACTCTTTTTTGCAGGTAAGCAA---GAATTAATCCTGACTGGAGTA-TATGAC- 472
* * * * * * * * * *
consensus_6930#0 AAGATCCAT-TGAGCACACCAAAACAGAGATGGGTTTTTATT-TCTACTCTCGATTTTGA 476
consensus_6930#2 AAGATCCATGTGAGCACACCAAAACAGAGATGGGTTTTGATTGTCTACTCTCGATTT-GA 447
consensus_6930#3 AGGGT-----TGAGGA-------------------------------------------- 443
consensus_6930#1 AGGACCTCTCATACAACATCTATATCTATATCTATACTAATA--TAAAAATAATATAAAA 530
* * * *
consensus_6930#0 TATACTAGTAATCGTGCACGTGCAATGCACGTTATTCACAATATGTAT-TGCACACAGTC 535
consensus_6930#2 TATACTAGTAATCGTGCACGTGCAATGCAC-TTATTCACGCAATGTATGTGCCCACA-TC 505
consensus_6930#3 ------------------------------------------------------------
consensus_6930#1 AGGAGGAGTTGCCCCCCTCCAATCGTACAGGCCAAATCACTTGGATCAATCCGTACCGTC 590
consensus_6930#0 AAATTCA-AGATGC-AAAATATGAA-AACAAATAAGATTTTCTTACTGCAATGATTGAGT 592
consensus_6930#2 ACATTCACAGATGCCAAAATATGGACAACGAATAGGAT--TCTTACTG-GATGATTGCGT 562
consensus_6930#3 ------------------------------------------------------------
consensus_6930#1 CATCTGCCGCATCC-AATTCCAGGTCATTCAGAAATTCATAGATAGCTCCAAGTTGAAGA 649
consensus_6930#0 AAGACTATTACATTTTTTAGTTAAAAGACAATTTGATAAGCATGCATCAGTGTAGAAAAT 652
consensus_6930#2 CAGCCCTATACCT----------------------------------------------- 575
consensus_6930#3 ------------------------------------------------------------
consensus_6930#1 GAGACCATCTTATTCATGCATGACAAAAGGATTTTATCTGTCTTCATCCCGGATGTGGTA 709
consensus_6930#0 CTTCCTACCAACTTAAGTGAAATAAACTTCAGAGAAATGATACTATACTATATCTTGGAA 712
consensus_6930#2 ------------------------------------------------------------
consensus_6930#3 ------------------------------------------------------------
consensus_6930#1 AGGTGATTACATTTATCCCTTTATTCAATCATGGCTTCAAATAATATCTATANGGCGACT 769
consensus_6930#0 GTCTTTCTTTATTGTTTACAAATAAAATAACCAGAATGAACTTAAGGTGGGAATTTGCAC 772
consensus_6930#2 ------------------------------------------------------------
consensus_6930#3 ------------------------------------------------------------
consensus_6930#1 GCACCTTTGCATTTACTTCTCCATA----------------------------------- 794
consensus_6930#0 NCATAAGCAATAACAATAAAAATGACAAAGAACAGGGTGAATAACTATGACCCGTATATA 832
consensus_6930#2 ------------------------------------------------------------
consensus_6930#3 ------------------------------------------------------------
consensus_6930#1 ------------------------------------------------------------
consensus_6930#0 TTTAAATTCAC 843
consensus_6930#2 -----------
consensus_6930#3 -----------
consensus_6930#1 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||