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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1187 fasta sequence
[CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATGTACAGGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACT-TATTTTGGGCGACAATTTGATCTA-GGACAGTTTGAACGTTTCCGGC-GGATATTTCACCATTCAACTTATAGGGTTTTGCTTGCCCACAAA-GAAAGAACTATATTGAGCAGTTT-ATGGGTTG-AAGAGAA-CCTA-TA-TAAGC-AAAGAGTGT-GGGTTCGA-GGATC-ACGTCCGG--AGGAAG--AAGCTATA-TTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGTTAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGACCGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATTATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAAAAAAAATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGAATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCTATTGTACATAAGTTTGGCGGCTGTATGGTTGTTTATGAAATACCGTCATCTGGAAAGCTTTCAGCGATAGCTCAATGTGGATGTTCAGGTCAGGAAACGGCATTGTCAGAAGAAACAAAGTCCTATATACACACATCTATGTTTTTATTTTGTGTACGCTATGATTGTCTATTGCTCCATCCAATCAGAAGTTGAATTGTTAACTGCTCAGGTACCTGATTTCCGAGTATATCTTCGATGTTTCCTGATTGACTTGTGAGTTTATCCTCTATGTTTCCTGCTTTTAGGATTACATGGCTCATGACTGCAGGTGACGAGGGTTGTGGCGTCCTTTCCGATCAGAATGTGTAACCTTCAAGTACTTGAAAACATGAAAGAAGAACCGGAAGGTGGATTGAATATGTTGTTTCACACTCACCAGAAAAGGGCAGGTAACTTGTTGGGAATATTTTTTTAGGTGACCATCATCGTCAGGTCAATAACTTGCTTGCAAGATGAAAGTAACATGATATCGATATCTATATATTTTCGCACAACCTGATGATGAGGCAAA]
[+] EMBL AK108682 [CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATGTACAGGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACT TATTTTGGGCGACAATTTGATCTA GGACAGTTTGAACGTTTCCGGC GGATATTTCACCATTCAACTTATAGGGTTTTGCTTGCCCACAAA GAAAGAACTATATTGAGCAGTTT ATGGGTTG AAGAGAA CCTA TA TAAGC AAAGAGTGT GGGTTCGA GGATC ACGTCCGG AGGAAG AAGCTATA TTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGTTAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGACCGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATTATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAAAAAAAATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGAATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCTATTGTACATAAGTTTGGCGGCTGTATGGTTGTTTATGAAATACCGTCATCTGGAAAGCTTTCAGCGATAGCTCAATGTGGATGTTCAGGTCAGGAAACGGCATTGTCAGAAGAAACAAAGTCCTATATACACACATCTATGTTTTTATTTTGTGTACGCTATGATTGTCTATTGCTCCATCCAATCAGAAGTTGAATTGTTAACTGCTCAGGTACCTGATTTCCGAGTATATCTTCGATGTTTCCTGATTGACTTGTGAGTTTATCCTCTATGTTTCCTGCTTTTAGGATTACATGGCTCATGACTGCAGGTGACGAGGGTTGTGGCGTCCTTTCCGATCAGAATGTGTAACCTTCAAGTACTTGAAAACATGAAAGAAGAACCGGAAGGTGGATTGAATATGTTGTTTCACACTCACCAGAAAAGGGCAGGTAACTTGTTGGGAATATTTTTTTAGGTGACCATCATCGTCAGGTCAATAACTTGCTTGCAAGATGAAAGTAACATGATATCGATATCTATATATTTTCGCACAACCTGATGATGAGGCAAA]
[+] EMBL AU162657 [CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATGTACAGGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACTNTATTTTGGGCGACAATTTGATCTAGGGACAGTTTGAACGTTTCCGGCGGGATATTTCACCATTCAACTTATAGGGNTTTGCTTGCCCACAAAGGAAAGAACTATATTGAGCAGTTTAATGGGTTGAAAGAGAANCCTATTANAAAGCAAAAGAGTGTGGGGTTCGAGGGATCAACGTCCGGGAAGAAAGGAAAGCTATATTTTCAGTTTACnaa ]
[+] EMBL AU056149 [ GAAACGGCATTGTCAGAAGAAACAAAGTCCTATATACACACATCTATGTTTTTATTTTGTGTACGCTATGATTGTCTATTGCTCCATCCAATCAGAAGTTGAATTGTTAACTGCTCAGGTACCTGATTTCCGAGTATATCTTCGATGTTTCCTGATTGACTTGTGAGTTTATCCTCTATGTTTCCTGCTTTTAGGATTACATGGCTCATGACTGCAGGTGACGAGGGTTGTGGCGTCCTTTCCGATCAGAATGTGTAACCTTCAAGTACTTGAAAACATGAAAGAAGAACCGGAAGGTGGATTGAATAaaaaaaa ]
consensusID : consensus_6932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 924 fasta sequence
[CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATGTACAGGGTAATAGGCTAATAGCTGCTTGCAAATTGCTCATTTTTGCTTAGATGTGGTAAAGGTTTGACACAACTTCATAAGTCTGAATCTATATGGCCTTATCAGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACTTATTTTGGGCGACAATTTGATCTAGGACAGGTAGACCAGAAGTATTTTCCTTCTGACATATATGGTTGTTCATGCTTCATAGCTGTCTTGCTGATTGCCACTAGTGCTACTCCAGTTTGAACGTTTCCGGCGGATATTTCACCATTCAACTTATAGGGTTTTGCTTGCCCACAAAGAAAGAACTATATTGAGCAGTTTATGGGTTGAAGAGGTTGGTCTTAACCCCCTTAATATTTCTGTCTATCGTACAATGAGACAAATTATCTTGATCTTGAATCTGATCGTGCTAACAGAACCTATATAAGCAAAGAGTGTGGGTTCGAGGATCACGTCCGGAGGAAGAAGCTATATTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGTTAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGACCGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATTATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAAAAAAGATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGAATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCTATTGTACATAAGTTTGGCGGCTGT]
[+] EMBL AK111387 [CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATGTACAGGGTAATAGGCTAATAGCTGCTTGCAAATTGCTCATTTTTGCTTAGATGTGGTAAAGGTTTGACACAACTTCATAAGTCTGAATCTATATGGCCTTATCAGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACTTATTTTGGGCGACAATTTGATCTAGGACAGGTAGACCAGAAGTATTTTCCTTCTGACATATATGGTTGTTCATGCTTCATAGCTGTCTTGCTGATTGCCACTAGTGCTACTCCAGTTTGAACGTTTCCGGCGGATATTTCACCATTCAACTTATAGGGTTTTGCTTGCCCACAAAGAAAGAACTATATTGAGCAGTTTATGGGTTGAAGAGGTTGGTCTTAACCCCCTTAATATTTCTGTCTATCGTACAATGAGACAAATTATCTTGATCTTGAATCTGATCGTGCTAACAGAACCTATATAAGCAAAGAGTGTGGGTTCGAGGATCACGTCCGGAGGAAGAAGCTATATTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGTTAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGACCGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATTATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAAAAAAGATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGAATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCTATTGTACATAAGTTTGGCGGCTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6932#0 ------------------------------------------------------------
consensus_6932#1 CAACTTGAGGCATTAAAATACAATGATCAGCCACGCCAAGATTATGGGATAGAAGTCATG 60
consensus_6932#0 ------------------------------------------------------------
consensus_6932#1 TACAGGGTAATAGGCTAATAGCTGCTTGCAAATTGCTCATTTTTGCTTAGATGTGGTAAA 120
consensus_6932#0 ------------------------------------------------------------
consensus_6932#1 GGTTTGACACAACTTCATAAGTCTGAATCTATATGGCCTTATCAGTTTGCAGGCTTTGAT 180
consensus_6932#0 CAACTTGAGGCATTAAAATACAATGATCAGCCACG----CCAAGATTATGGGATAGAAGT 56
consensus_6932#1 CCTTTTGAGAGATCAACTTATTTTGGGCGACAATTTGATCTAGGACAGGTAGACCAGAAG 240
* ***** ** ** ** ** * * * * * ** ** *
consensus_6932#0 CATGTACAGGTTTGCAGGCTTTGATCCTTTTGAGAGATCAACTTATTTTGGGCGACAATT 116
consensus_6932#1 TATTTTCCTTCTGACATATATGGTTGTTCATGCTTCATAGCTGTCTTGCTGATTGCCACT 300
** * * * ** * * * * ** ** * ** * * * *
consensus_6932#0 TGATCTAGGACAGTTTGAACGTTTCCGGCGGATATTTCACCATTCAACTTATAGGGTTTT 176
consensus_6932#1 AGTGCTACTCCAGTTTGAACGTTTCCGGCGGATATTTCACCATTCAACTTATAGGGTTTT 360
* *** **************************************************
consensus_6932#0 GCTTGCCCACAAAGAAAGAACTATATTGAGCAGTTTATGGGTTGAAGAG----------- 225
consensus_6932#1 GCTTGCCCACAAAGAAAGAACTATATTGAGCAGTTTATGGGTTGAAGAGGTTGGTCTTAA 420
*************************************************
consensus_6932#0 ------------------------------------------------------------
consensus_6932#1 CCCCCTTAATATTTCTGTCTATCGTACAATGAGACAAATTATCTTGATCTTGAATCTGAT 480
consensus_6932#0 -----------AACCTATATAAGCAAAGAGTGTGGGTTCGAGGATCACGTCCGGAGGAAG 274
consensus_6932#1 CGTGCTAACAGAACCTATATAAGCAAAGAGTGTGGGTTCGAGGATCACGTCCGGAGGAAG 540
*************************************************
consensus_6932#0 AAGCTATATTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGT 334
consensus_6932#1 AAGCTATATTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTACTGGT 600
************************************************************
consensus_6932#0 TAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGAC 394
consensus_6932#1 TAACTGAGAGCTTAATCAATGATGATGGAGATGCACTCTCAGGTGGTCTTGCTTACTGAC 660
************************************************************
consensus_6932#0 CGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATT 454
consensus_6932#1 CGATATGTGTCTTACACTCAAGCTTCTAGCGTATTGATGTACTGATGAATCTAGAAAATT 720
************************************************************
consensus_6932#0 ATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAA 514
consensus_6932#1 ATATAGCCGTGCAATTATGCACGGTTGGTCCAGAAATAGGTTTTCTTTTTTTTTAAAAAA 780
************************************************************
consensus_6932#0 AAAAAATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGA 574
consensus_6932#1 AAAAGATTGTCCAGTTATATGTCACGGAAAGAGTAGCAATAGTACATGTGCTGTGGTAGA 840
**** *******************************************************
consensus_6932#0 ATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCT 634
consensus_6932#1 ATTGACTGCGACACTCCCATTCTGGGAGCATTCAATATGTCAATGGTCAAACACGCCGCT 900
************************************************************
consensus_6932#0 ATTGTACATAAGTTTGGCGGCTGTATGGTTGTTTATGAAATACCGTCATCTGGAAAGCTT 694
consensus_6932#1 ATTGTACATAAGTTTGGCGGCTGT------------------------------------ 924
************************
consensus_6932#0 TCAGCGATAGCTCAATGTGGATGTTCAGGTCAGGAAACGGCATTGTCAGAAGAAACAAAG 754
consensus_6932#1 ------------------------------------------------------------
consensus_6932#0 TCCTATATACACACATCTATGTTTTTATTTTGTGTACGCTATGATTGTCTATTGCTCCAT 814
consensus_6932#1 ------------------------------------------------------------
consensus_6932#0 CCAATCAGAAGTTGAATTGTTAACTGCTCAGGTACCTGATTTCCGAGTATATCTTCGATG 874
consensus_6932#1 ------------------------------------------------------------
consensus_6932#0 TTTCCTGATTGACTTGTGAGTTTATCCTCTATGTTTCCTGCTTTTAGGATTACATGGCTC 934
consensus_6932#1 ------------------------------------------------------------
consensus_6932#0 ATGACTGCAGGTGACGAGGGTTGTGGCGTCCTTTCCGATCAGAATGTGTAACCTTCAAGT 994
consensus_6932#1 ------------------------------------------------------------
consensus_6932#0 ACTTGAAAACATGAAAGAAGAACCGGAAGGTGGATTGAATATGTTGTTTCACACTCACCA 1054
consensus_6932#1 ------------------------------------------------------------
consensus_6932#0 GAAAAGGGCAGGTAACTTGTTGGGAATATTTTTTTAGGTGACCATCATCGTCAGGTCAAT 1114
consensus_6932#1 ------------------------------------------------------------
consensus_6932#0 AACTTGCTTGCAAGATGAAAGTAACATGATATCGATATCTATATATTTTCGCACAACCTG 1174
consensus_6932#1 ------------------------------------------------------------
consensus_6932#0 ATGATGAGGCAAA 1187
consensus_6932#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||