cluster # 6934

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Oryza sativa
cluster # 6934 cluster # 6934 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6934#0 length = 283 sequences # 1

consensus_6934#1 length = 237 sequences # 2
consensus_6934#2 length = 179 sequences # 1

consensusID : consensus_6934#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 283
fasta sequence

                              [ACTTGAACAGGATCTGTTCTATAGGCTCGTACCGTTGCATCCTTTACCAATAAGGAGGCAAGCACTCCAGTCTGGTTGATGCGACATGACCTCTGGGCCAGAGCGTGATTAACGGCCAGGATGAATCCGATGCGAGCTCATCCGACGGCTGTAGAGGATCGTTCCTGCCTGGTTCACTCCAGTGCAGGGTGGCCCAGAGGTTGTCTGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF314301             [ACTTGAACAGGATCTGTTCTATAGGCTCGTACCGTTGCATCCTTTACCAATAAGGAGGCAAGCACTCCAGTCTGGTTGATGCGACATGACCTCTGGGCCAGAGCGTGATTAACGGCCAGGATGAATCCGATGCGAGCTCATCCGACGGCTGTAGAGGATCGTTCCTGCCTGGTTCACTCCAGTGCAGGGTGGCCCAGAGGTTGTCTGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6934#0
ACTTGAACAGGATCTGTTCTATAGGCTCGTACCGTTGCATCCTTTACCAATAAGGAGGCA
AGCACTCCAGTCTGGTTGATGCGACATGACCTCTGGGCCAGAGCGTGATTAACGGCCAGG
ATGAATCCGATGCGAGCTCATCCGACGGCTGTAGAGGATCGTTCCTGCCTGGTTCACTCC
AGTGCAGGGTGGCCCAGAGGTTGTCTGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6934#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 237
fasta sequence

                              [ACACTGACATGGACTGAGGAGTAGGAAATTGGTTGATGACGCATGACCTGTGGGCCAGAGCGTGATTAACGGCCGGATCATGTCACTGGCTGATTCGATCCCACGGCTGTAGAGGATCGTTCCTTGCCGGGCCTCGCTTGGCCAGGATGGCTCTCAGGTTGTCTGACAGGCTCCATAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]

[+] EMBL CF319163             [ACACTGACATGGACTGAGGAGTAGGAAATTGGTTGATGACGCATGACCTGTGGGCCAGAGCGTGATTAACGGCCGGATCATGTCACTGGCTGATTCGATCCCACGGCTGTAGAGGATCGTTCCTTGCCGGGCCTCGCTTGGCCAGGATGGCTCTCAGGTTGTCTGACAGGCTCCATAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]
[-] EMBL CF319164             [        ATGGACTGAGGAGTAGGAAATTGGTTGATGACGCATGACCTGTGGGCCAGAGCGTGATTAACGGCCGGATCATGTCACTGGGTGATTCGATCCCCCGGCTGTAAAGGATCGTTCCTTGCCGGGCCTCGCTTGGCCAGGATGGCTTTCAGGTTGTTTGACAGGCTCCATAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA                         ]




>consensus_6934#1
ACACTGACATGGACTGAGGAGTAGGAAATTGGTTGATGACGCATGACCTGTGGGCCAGAG
CGTGATTAACGGCCGGATCATGTCACTGGCTGATTCGATCCCACGGCTGTAGAGGATCGT
TCCTTGCCGGGCCTCGCTTGGCCAGGATGGCTCTCAGGTTGTCTGACAGGCTCCATAAAA
AAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG

consensusID : consensus_6934#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [GGCTCGTACCGTTGCATCCTTGACTAATAAGGAGGCAAGCACTCAAGCTTGGTTGATGACGCATGACCTGTGNGCCAGAGCGTGATTAACNGCCGGATCATGTCACTGGCTGATTCGATCCCACGGCTGTAGAGGATCGTTCCTTGCCGGCCTCGCTTGGCAGGATGGCTCTCAGGTTG]

[-] EMBL D42674               [GGCTCGTACCGTTGCATCCTTGACTAATAAGGAGGCAAGCACTCAAGCTTGGTTGATGACGCATGACCTGTGNGCCAGAGCGTGATTAACNGCCGGATCATGTCACTGGCTGATTCGATCCCACGGCTGTAGAGGATCGTTCCTTGCCGGCCTCGCTTGGCAGGATGGCTCTCAGGTTG]




>consensus_6934#2
GGCTCGTACCGTTGCATCCTTGACTAATAAGGAGGCAAGCACTCAAGCTTGGTTGATGAC
GCATGACCTGTGNGCCAGAGCGTGATTAACNGCCGGATCATGTCACTGGCTGATTCGATC
CCACGGCTGTAGAGGATCGTTCCTTGCCGGCCTCGCTTGGCAGGATGGCTCTCAGGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6934#0      ACTTGAACAGGATCTGTTCTATAGGCTCGTACCGTTGCATCCTTTACCAATAAGGAGGCA 60
consensus_6934#2      -----------------------GGCTCGTACCGTTGCATCCTTGACTAATAAGGAGGCA 37
consensus_6934#1      -------------------------------------------ACACTGACATGGACTGA 17
                                                                   **  * * ***   *

consensus_6934#0      AGCACTCCAGTCTGGTTGATGCGACATGACCTCTGGGCCAGAGCGTGATTAACGGCCAGG 120
consensus_6934#2      AGCACTCAAGCTTGGTTGATGACGCATGACCTGTGNGCCAGAGCGTGATTAACNGCCGGA 97
consensus_6934#1      GGAGTAGGAAATTGGTTGATGACGCATGACCTGTGGGCCAGAGCGTGATTAACGGCCGGA 77
                       *      *   *********   ******** ** ***************** *** * 

consensus_6934#0      ATGAATCCGATGCGAGCTC-ATCCGACGGCTGTAGAGGATCGTTCCT-GCCTGGT-TCAC 177
consensus_6934#2      TCATGTCACTGGCTGATTCGATCCCACGGCTGTAGAGGATCGTTCCTTGCCGGCC-TCGC 156
consensus_6934#1      TCATGTCACTGGCTGATTCGATCCCACGGCTGTAGAGGATCGTTCCTTGCCGGGCCTCGC 137
                           **    **    ** **** ********************** *** *   ** *

consensus_6934#0      TCCAGTGCAGGGTGGCCCAGAGGTTGTCTGACAGAAAAAAAAAAAAAAAAAAAAAAAAAA 237
consensus_6934#2      TTG---GCAGGATGGCTCTCAGGTTG---------------------------------- 179
consensus_6934#1      TTGG--CCAGGATGGCTCTCAGGTTGTCTGACAGGCTCCATAAAAAAAAAGAAAAAAAAA 195
                      *      **** **** *  ******                                  

consensus_6934#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 283
consensus_6934#2      ----------------------------------------------
consensus_6934#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG---- 237