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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1730 fasta sequence
[GACTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCGGCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAGATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGGCAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAGTCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACGGCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAACAGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATGGTTAGTTTTACTAAAAGTACATTTTGTGCCAAGAATTTTATTCTTCTCATTTGCTTTGTTGTCCTATTGTTCTCATGTTAACTCCAATTTAACACCTTCTGCAATGATGTGAGTAGATGTCTAACAAGGCCAACCCCTGAAAAGAAACTCTGATCAGTAAATCCAGATTCTAGTTATGAGGAGTTTGTGTGCTCATATCTAAATTAGTCATGTACAAAAAATATTCACAAACAGTTCAGAAACTTTCATTAGTTACTATTGAATCTCACTTTCATTTAGATTTGGAAGCAATGTTTCGTGACTTTGTTCATTTTAAGCTAGGTTTACTTTTTTGGAGATTCTCTGACTGGTTGGCTGCATTCATCCATTGGTTATTTTTAAAATGGGTCTCTCAATCTTCATGACAGCTCTGCAGAAGCAGTTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTGCTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTGATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGGAGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCATTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCGGGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATGTCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAACACCAGGAGTCTACAAGATATTGAGAGATGGAAGTTCAAGGCAGGAAACGACAGCGGTGCTCGGCAAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCATAAAATTGGATCATGATTCAATTTGAAATAGTATACTCTTTGTTGGTGATTAAATGTAACAGAAGTCAGAATCATGACCGGAGATGATGTCATCTCGATAGAAAAACAATCATACGCTAATGGCCATGGGAAAAGGATCGGCCGTCCAAGCTACAGCAAACCTGCTGAAATCCTTCAGCGAGAAAGAAAGAATAACTGGAAATGAGTACAAGAGACTCCAAAAGTTTAGCATAATGGCTAATATGGGTACTATTAGGCTATATTTTTCCCTTTTGTGTAGCTCCATTTCAATTCAGCTGCAATTTTTCAGAGTAAAATTGGTACATGAATCATGAATGGCTAATATGGGTACTATTAGGCTA]
[+] EMBL AK065564 [GACTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCGGCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAGATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGGCAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAGTCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACGGCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAACAGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATGGTTAGTTTTACTAAAAGTACATTTTGTGCCAAGAATTTTATTCTTCTCATTTGCTTTGTTGTCCTATTGTTCTCATGTTAACTCCAATTTAACACCTTCTGCAATGATGTGAGTAGATGTCTAACAAGGCCAACCCCTGAAAAGAAACTCTGATCAGTAAATCCAGATTCTAGTTATGAGGAGTTTGTGTGCTCATATCTAAATTAGTCATGTACAAAAAATATTCACAAACAGTTCAGAAACTTTCATTAGTTACTATTGAATCTCACTTTCATTTAGATTTGGAAGCAATGTTTCGTGACTTTGTTCATTTTAAGCTAGGTTTACTTTTTTGGAGATTCTCTGACTGGTTGGCTGCATTCATCCATTGGTTATTTTTAAAATGGGTCTCTCAATCTTCATGACAGCTCTGCAGAAGCAGTTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTGCTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTGATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGGAGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCATTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCGGGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATGTCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAACACCAGGAGTCTACAAGATATTGAGAGATGGAAGTTCAAGGCAGGAAACGACAGCGGTGCTCGGCAAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCATAAAATTGGATCATGATTCAATTTGAAATAGTATACTCTTTGTTGGTGATTAAATGTAACAGAAGTCAGAATCATGACCGGAGATGATGTCATCTCGATAGAAAAACAATCATACGCTAATGGCCATGGGAAAAGGATCGGCCGTCCAAGCTACAGCAAACCTGCTGAAATCCTTCAGCGAGAAAGAAAGAATAACTGGAAATGAGTACAAGAGACTCCAAAAGTTTAGCATAATGGCTAATATGGGTACTATTAGGCTATATTTTTCCCTTTTGTGTAGCTCCATTTCAATTCAGCTGCAATTTTTCAGAGTAAAATTGGTACATGAATCATGAATGGCTAATATGGGTACTATTAGGCTA]
consensusID : consensus_6937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1223 fasta sequence
[CTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCGGCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAGATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGGCAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAGTCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACGGCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAACAGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATGCTCTGCAGAAGCAGTTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTGCTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTGATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGGAGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCATTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCGGGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATGTCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAACACCAGGAGTCTACAAGATATTGAGAGAT-GGAAGTTCAA-GGCAGG-AAACGACAGCGGTGCTCGGC-AAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCAT-AAAATTGGTACCATCAAATACTAGTCCCTTTGTTATCTATCTGGCTTCTTGCTTAGTTAGGTGCTGTACCAGAATATAGGTTGTTGTTTGTGCTTTTCTTTTTCATATTCTGAATCAGAAGGTGTCAGCTTCCTGTTTCAATGTCAATGCCCTTACAGTATCACGTGAACTTCGATTGCTACACTACAGTTCATTCTATGGTAGATTACACTAGCATGCCTATGCAAGCTAAAAGAAATATTGATTGTAATGGATTTTAATAT]
[+] EMBL AK067825 [CTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCGGCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAGATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGGCAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAGTCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACGGCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAACAGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATGCTCTGCAGAAGCAGTTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTGCTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTGATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGGAGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCATTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCGGGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATGTCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAACACCAGGAGTCTACAAGATATTGAGAGAT GGAAGTTCAA GGCAGG AAACGACAGCGGTGCTCGGC AAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCAT AAAATTGGTACCATCAAATACTAGTCCCTTTGTTATCTATCTGGCTTCTTGCTTAGTTAGGTGCTGTACCAGAATATAGGTTGTTGTTTGTGCTTTTCTTTTTCATATTCTGAATCAGAAGGTGTCAGCTTCCTGTTTCAATGTCAATGCCCTTACAGTATCACGTGAACTTCGATTGCTACACTACAGTTCATTCTATGGTAGATTACACTAGCATGCCTATGCAAGCTAAAAGAAATATTGATTGTAAT ]
[-] EMBL AU063465 [ ACAAGATATTGACNGATGGGAAGTTCAANGCCAGGAAAACGACAGCNGTGCTCGGCNAAGTTTGGCTTTGGTGAAGCTTGGTGACAACTTGGTGACCTCAT AAAATTGGTACCATCAAATACTAGTCCCTTTGTTATCTATCTGGCNTCTTGCNTAGTTAGGTGCTGTACCAGAATATAGGTTGTTGTTTGTGCTTTTCTTTTTCATATTCTGAATCAGAAGGTGTCAGCTTCCTGTTTCAATGTCAATGCCCTTACAGTATCACGTGAACTTCGATTGCTACACTACAGTTCATTCTATGGTAGATTACACTAGCATGCCTATGCAAGCTAAAAGAAATATTGATTGTAATGGATTTTAATAT]
[-] EMBL AU063450 [ nCTTGTTGACCTCATAAAAATTGGTACCATCAAATACTAGTCCCTTTGTTATCTANCTGNCTTCTTGCTTAGTTAGGTGCTGTACCAGAATATAGGTTGTTGTNTGTGCTTTTCTTTTTCATATTCTGAATCAGAAGGTGTCAGCTTCCTGTTTCAATGTCAATGCCCTTACAGTATCACGTGAACTTCGATTGCTACACTACAGTTCATTCTATGGTAGATTACACTAGCATGCCTATGCAAGCTAAAAGAAATATTGATTGTAATGGATTTTAATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6937#0 GACTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCG 60
consensus_6937#1 --CTAGTCCTCTCTCTCCGGGAGAAATTTTGCTCCGGCCGCCTCGGCGTCGCGCTCCGCG 58
**********************************************************
consensus_6937#0 GCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAG 120
consensus_6937#1 GCTCGTAATCTTTCGCGGTGGCCGGCGGCGGGGGAGAGGAGGAGGAGGAGGAGGAGGGAG 118
************************************************************
consensus_6937#0 ATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGG 180
consensus_6937#1 ATGAAGGCGTGCGCGAGGGCAGCGGGGGAGAGGCTCCCCCTGGTCGGTGCTCCCGCCAGG 178
************************************************************
consensus_6937#0 CAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAG 240
consensus_6937#1 CAACCCCTGGCTCGGAGTTTTGTTAAGGTCAACAGATTATCATCTCAACATGAGACGAAG 238
************************************************************
consensus_6937#0 TCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACG 300
consensus_6937#1 TCTGTGGTATCCTGCTCGGTAAGGGTGTCAGATGACAAGACACACCGAATAGAAGCCACG 298
************************************************************
consensus_6937#0 GCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAAC 360
consensus_6937#1 GCAGAACACATCCTTCCAGCAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAAC 358
************************************************************
consensus_6937#0 AGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATGG 420
consensus_6937#1 AGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATG- 417
***********************************************************
consensus_6937#0 TTAGTTTTACTAAAAGTACATTTTGTGCCAAGAATTTTATTCTTCTCATTTGCTTTGTTG 480
consensus_6937#1 ------------------------------------------------------------
consensus_6937#0 TCCTATTGTTCTCATGTTAACTCCAATTTAACACCTTCTGCAATGATGTGAGTAGATGTC 540
consensus_6937#1 ------------------------------------------------------------
consensus_6937#0 TAACAAGGCCAACCCCTGAAAAGAAACTCTGATCAGTAAATCCAGATTCTAGTTATGAGG 600
consensus_6937#1 ------------------------------------------------------------
consensus_6937#0 AGTTTGTGTGCTCATATCTAAATTAGTCATGTACAAAAAATATTCACAAACAGTTCAGAA 660
consensus_6937#1 ------------------------------------------------------------
consensus_6937#0 ACTTTCATTAGTTACTATTGAATCTCACTTTCATTTAGATTTGGAAGCAATGTTTCGTGA 720
consensus_6937#1 ------------------------------------------------------------
consensus_6937#0 CTTTGTTCATTTTAAGCTAGGTTTACTTTTTTGGAGATTCTCTGACTGGTTGGCTGCATT 780
consensus_6937#1 ------------------------------------------------------------
consensus_6937#0 CATCCATTGGTTATTTTTAAAATGGGTCTCTCAATCTTCATGACAGCTCTGCAGAAGCAG 840
consensus_6937#1 ----------------------------------------------CTCTGCAGAAGCAG 431
**************
consensus_6937#0 TTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTG 900
consensus_6937#1 TTAATCGTATATATGAGATCAAAGGACGCGTACAGACACGGCCTCTTGCAATCTGTGTTG 491
************************************************************
consensus_6937#0 CTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTG 960
consensus_6937#1 CTGATGTCCCAGACATATCACGGTTTGCTGTTGTGGATCACCTACCTCATGGCCTGCTTG 551
************************************************************
consensus_6937#0 ATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGG 1020
consensus_6937#1 ATAGTCTACTTCCTGGGCCTGTCACAGTTGTTTTAAAACGAGGTAACAACAGTATATTGG 611
************************************************************
consensus_6937#0 AGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCA 1080
consensus_6937#1 AGAGATCTCTTAATCCTGGTTTGGAAAGCATTGGAGTTCGTGTGCCAGATTTTGATTTCA 671
************************************************************
consensus_6937#0 TTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCG 1140
consensus_6937#1 TTCGAGCCATTTCCCGTGGTGCTGGAAGTGCGCTTGCACTTACAAGCGCCAACTTAAGCG 731
************************************************************
consensus_6937#0 GGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATG 1200
consensus_6937#1 GGCATCCTAGTAGTGTCAACGTCAAAGATTTTGAGGATCTGTGGCCACATTGTTCATATG 791
************************************************************
consensus_6937#0 TCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAA 1260
consensus_6937#1 TCTTTGATGGTGGAATCCTCCCTTCTGGGCGTGCTGGTTCAACAATTGTGGACCTAATAA 851
************************************************************
consensus_6937#0 CACCAGGAGTCTACAAGATATTGAGAGATGGAAGTTCAAGGCAGGAAACGACAGCGGTGC 1320
consensus_6937#1 CACCAGGAGTCTACAAGATATTGAGAGATGGAAGTTCAAGGCAGGAAACGACAGCGGTGC 911
************************************************************
consensus_6937#0 TCGGCAAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCATAAAATTGGATC 1380
consensus_6937#1 TCGGCAAGTTTGGCTTTGTTGAAGCTTGGTGACAACTTGTTGACCTCATAAAATTGG--T 969
*********************************************************
consensus_6937#0 ATGATTCAATTTGAAATAGTATACTCTTTGTTGGTGATTAAATGTAACAGAAGTCAGAAT 1440
consensus_6937#1 ACCATCAAATACTAGTCCCTTTGTTATCTATCTGGCTTCTTGCTTAGTTAGGTGCTGTAC 1029
* ** *** * * * * * * * * * ** * * *
consensus_6937#0 CATGACCGGAGATGATGTCATCTCGATAGAAAAACAATCATACGCTAATGGCCATGGGAA 1500
consensus_6937#1 CAGAATATAGGTTGTTGTTTGTGCTTTT----CTTTTTCATATTCTGA--ATCAGAAGGT 1083
** * * ** *** * * ***** ** * ** *
consensus_6937#0 AAGGATCGGCCGTCCAAGCTACAGCAAACCTGCTGAAATCCTTCAGCGAGAAAGAAAGAA 1560
consensus_6937#1 GTCAGCTTCCTGTTTCAATGTCAATGCCCTTACAGTATCACGTGAACTTCGATTGCTACA 1143
* ** * ** * * * * * * * * * * *
consensus_6937#0 TAACTGGAAATGAGTACAAGAGACTCCAAAAGTTTAGC-ATAATGGCTAATATGGGTACT 1619
consensus_6937#1 CTACAGTTCATTC-TATGGTAGATTACACTAGCATGCCTATGCAAGCTAAAAGAAATATT 1202
** * ** ** *** * ** ** * * ** ***** * ** *
consensus_6937#0 -ATTAGGCTATATTTTTCCCTTTTGTGTAGCTCCATTTCAATTCAGCTGCAATTTTTCAG 1678
consensus_6937#1 GATTGTAATGGATTTTAATAT--------------------------------------- 1223
*** * ***** *
consensus_6937#0 AGTAAAATTGGTACATGAATCATGAATGGCTAATATGGGTACTATTAGGCTA 1730
consensus_6937#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||