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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6939#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2652 fasta sequence
[CAAAAGCTAGCTGTCTGGGAGATGGTGGTGGATGAAGGGATGTGCTGCTAGCAGAAATGGTGATCGGGAGCAAATGTGGGTTGATGATTCTCGTACCAGAAGCATTGTTTGATACGATTTTGATCAGCTGGCGGGAGAGGAAACATGTCATCGGAATCGGATCAAGCCCCCTCGCCAAGCTCGCCCTCGTCGTCGTCGTCGTCGTCGTCAGGAAATGGTTCCAACAAGGCGCCTCCGCCGGAAGAGTCTGATAATTCGAGCAGCAATGGGTCGTCGTCGTCTAGCCCGACACCTCCTTCGTCGCAGAGCTCCGACTCCGACTCCGGAGGAGGCTCGAGTTCGCCGTCACAAGGCTCGTCCTCGCCTAGCCCGCCTCCGCCGTCGGGGAGCTCTTCCGAGTCGCATTCGTCTCCACCGCCGGCGCCGCCCCAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGGTGGAGGTTCCAAGTCTTCGCCGGAGGCACCGTCTCCGCCATCCGAGTCATCTGGAAATGGTGGCGGTGGCGGCGGCGGCGGCCGCTCCTCGCCGCCGCCAAACTGGTCGCCCCCTCCGCAGCAGCAGCAGCAGCACCAGTCCGGAGGCTCAACTCCATCACCTCCTCCGTCTCCGTCCTCTAACCAGCCACCGCCATCGAGTGGCTCGTCAGCGTCATCGTCGGAACCATCTCCGCCTCGCTCATCGCCGCCGCCATCGCCGCCGCAATCAAGTGGCGGCAATAATGGCCAACCGCCTAAACCTTCCGGCGGGCAGCAGCAAGCTCCTCCGCAGTCACCTCCGTCGGCGGCGAACCAGTCGGTGGTGTTCATTCCCGTCCCGGTGGCGTCGAACAGCCCTCCCGGAATGCTGCCGCCACCGCAGGTGATCGACGCCACGCCCTCCGGCGCCATCTCGTCGACCAACTTCCCCGGAGGAAGAAACAGCACGGCGGGCTCCTCCAACACTTCATTGTCACAGCAGCAACACACAACCGTAAGCTCGACGGCCCAGGCCAGCAGCAGCGGCCACATAGCCGCCGCCATCGCCGGCGCCGCGGTCACGGGCCTCCTGTGTGCCATAGTGGCCATCTACCTCATCGTGTCGAGCCGGAGGAAGAAGAAGATGGATGGGCTGGTCTACCACTACGATGGCAACAACTACTTCGTGCCATCGTCTCAGTTTGGCGGGTCAAGCCGCAACCACCACCCACCACCGTCGGCGATTATGCTCAACTCCGGTGGGGCGTCAGCGGACGGCGGCGGGTACTACAATTCGGGGACATTCTCGGGCGGAGAGGGGACAGGGCCGGCGGGGTCCAAGTCGCGGTTCAGCTACGAGGAGCTGACGGGGATCACCAGCAACTTCTCGCGGGACAACGTGATCGGCGAGGGCGGGTTTGGGTGCGTGTACAAGGGGTGGCTAAGCGACGGCAAGTGCGTGGCCGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGCGCACCACCGCATGCTCATCTACGAGTTCGTTCCCAACGGCACCCTCGAACACCACCTTCATGGCCGTGGCATGCCAGTGATGGACTGGCCGACGAGGCTGCGGATTGCCATTGGTGCAGCCAAGGGGCTAGCATACCTACACGAGGACTGCCACCCGCGGATTATCCACCGGGACATCAAGACCGCCAATATCCTACTGGACTACTCGTGGGAAGCACAGGTGGCAGACTTTGGGCTTGCGAAGCTGGCGAATGATACGCACACTCACGTGTCGACGCGCATCATGGGCACCTTCGGGTACCTAGCGCCAGAGTACGCCTCCAGCGGCAAGCTCACGGACCGCTCCGACGTCTTCTCCTTTGGTGTCGTCCTACTGGAGCTCATCACCGGCCGCAAGCCGGTTGACCAGACGCAGCCCCTCGGAGAGGAGAGCCTCGTCGAATGGGCACGACCAGTGCTGGCGGATGCGGTAGAGACGGGTGATCTCAGTGAGCTGGTTGATCCACGGCTAGAGGGCGCATACAACCGCAATGAGATGATGACGATGGTGGAAGCAGCGGCCGCATGTGTTCGCCACTCCGCTCCCAAACGGCCGCGGATGGTGCAGGTGATGCGGGTACTAGATGAGGGGAGCATGACGGACCTTAGCAATGGGATCAAGGTGGGGCAGAGCCAAGTGTTCACTGGTGGCAGCGACGCTGCTGACATCCAGCAACTCCGTCGTATCGCATTCGCCTCCGAGGAGTTCACCGGAGAGTTTGAGCAGAGAACAACCAACTCCAACTCTGAGTCGCGGCCGATGAATCGGATACCAGAGTAATAACGCCTTGTATGTTTTGAAGTGCTTAGCACCGGTGCAATTACGTGATAAGGGTGACAACAAGAGGTGAGTCCATATAGAACTGAACTGAACTCAAAAACACATGTAGGAAATTCAGGGTTTTGGGTCTAATTTTCGGCAGTTTGTACTTATGTACTTCAAAACCCTTTTGCACATGGAGGACATTCAATCAAGTGATAAAGATATAGGGAAATCAGTCTATTAGGATCCATAATGGTTTGCTAAGCACATACCATCAGC]
[+] EMBL AK100169 [CAAAAGCTAGCTGTCTGGGAGATGGTGGTGGATGAAGGGATGTGCTGCTAGCAGAAATGGTGATCGGGAGCAAATGTGGGTTGATGATTCTCGTACCAGAAGCATTGTTTGATACGATTTTGATCAGCTGGCGGGAGAGGAAACATGTCATCGGAATCGGATCAAGCCCCCTCGCCAAGCTCGCCCTCGTCGTCGTCGTCGTCGTCGTCAGGAAATGGTTCCAACAAGGCGCCTCCGCCGGAAGAGTCTGATAATTCGAGCAGCAATGGGTCGTCGTCGTCTAGCCCGACACCTCCTTCGTCGCAGAGCTCCGACTCCGACTCCGGAGGAGGCTCGAGTTCGCCGTCACAAGGCTCGTCCTCGCCTAGCCCGCCTCCGCCGTCGGGGAGCTCTTCCGAGTCGCATTCGTCTCCACCGCCGGCGCCGCCCCAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGGTGGAGGTTCCAAGTCTTCGCCGGAGGCACCGTCTCCGCCATCCGAGTCATCTGGAAATGGTGGCGGTGGCGGCGGCGGCGGCCGCTCCTCGCCGCCGCCAAACTGGTCGCCCCCTCCGCAGCAGCAGCAGCAGCACCAGTCCGGAGGCTCAACTCCATCACCTCCTCCGTCTCCGTCCTCTAACCAGCCACCGCCATCGAGTGGCTCGTCAGCGTCATCGTCGGAACCATCTCCGCCTCGCTCATCGCCGCCGCCATCGCCGCCGCAATCAAGTGGCGGCAATAATGGCCAACCGCCTAAACCTTCCGGCGGGCAGCAGCAAGCTCCTCCGCAGTCACCTCCGTCGGCGGCGAACCAGTCGGTGGTGTTCATTCCCGTCCCGGTGGCGTCGAACAGCCCTCCCGGAATGCTGCCGCCACCGCAGGTGATCGACGCCACGCCCTCCGGCGCCATCTCGTCGACCAACTTCCCCGGAGGAAGAAACAGCACGGCGGGCTCCTCCAACACTTCATTGTCACAGCAGCAACACACAACCGTAAGCTCGACGGCCCAGGCCAGCAGCAGCGGCCACATAGCCGCCGCCATCGCCGGCGCCGCGGTCACGGGCCTCCTGTGTGCCATAGTGGCCATCTACCTCATCGTGTCGAGCCGGAGGAAGAAGAAGATGGATGGGCTGGTCTACCACTACGATGGCAACAACTACTTCGTGCCATCGTCTCAGTTTGGCGGGTCAAGCCGCAACCACCACCCACCACCGTCGGCGATTATGCTCAACTCCGGTGGGGCGTCAGCGGACGGCGGCGGGTACTACAATTCGGGGACATTCTCGGGCGGAGAGGGGACAGGGCCGGCGGGGTCCAAGTCGCGGTTCAGCTACGAGGAGCTGACGGGGATCACCAGCAACTTCTCGCGGGACAACGTGATCGGCGAGGGCGGGTTTGGGTGCGTGTACAAGGGGTGGCTAAGCGACGGCAAGTGCGTGGCCGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGCGCACCACCGCATGCTCATCTACGAGTTCGTTCCCAACGGCACCCTCGAACACCACCTTCATGGCCGTGGCATGCCAGTGATGGACTGGCCGACGAGGCTGCGGATTGCCATTGGTGCAGCCAAGGGGCTAGCATACCTACACGAGGACTGCCACCCGCGGATTATCCACCGGGACATCAAGACCGCCAATATCCTACTGGACTACTCGTGGGAAGCACAGGTGGCAGACTTTGGGCTTGCGAAGCTGGCGAATGATACGCACACTCACGTGTCGACGCGCATCATGGGCACCTTCGGGTACCTAGCGCCAGAGTACGCCTCCAGCGGCAAGCTCACGGACCGCTCCGACGTCTTCTCCTTTGGTGTCGTCCTACTGGAGCTCATCACCGGCCGCAAGCCGGTTGACCAGACGCAGCCCCTCGGAGAGGAGAGCCTCGTCGAATGGGCACGACCAGTGCTGGCGGATGCGGTAGAGACGGGTGATCTCAGTGAGCTGGTTGATCCACGGCTAGAGGGCGCATACAACCGCAATGAGATGATGACGATGGTGGAAGCAGCGGCCGCATGTGTTCGCCACTCCGCTCCCAAACGGCCGCGGATGGTGCAGGTGATGCGGGTACTAGATGAGGGGAGCATGACGGACCTTAGCAATGGGATCAAGGTGGGGCAGAGCCAAGTGTTCACTGGTGGCAGCGACGCTGCTGACATCCAGCAACTCCGTCGTATCGCATTCGCCTCCGAGGAGTTCACCGGAGAGTTTGAGCAGAGAACAACCAACTCCAACTCTGAGTCGCGGCCGATGAATCGGATACCAGAGTAATAACGCCTTGTATGTTTTGAAGTGCTTAGCACCGGTGCAATTACGTGATAAGGGTGACAACAAGAGGTGAGTCCATATAGAACTGAACTGAACTCAAAAACACATGTAGGAAATTCAGGGTTTTGGGTCTAATTTTCGGCAGTTTGTACTTATGTACTTCAAAACCCTTTTGCACATGGAGGACATTCAATCAAGTGATAAAGATATAGGGAAATCAGTCTATTAGGATCCATAATGGTTTGCTAAGCACATACCATCAGC]
consensusID : consensus_6939#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2141 fasta sequence
[CCCTCTTCCCTTTGGCCCTGTTGCCCCCAATTCGCCTTCGACCCCTTCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGGGTTCACAAATTTTTTCAATTGTGTTCTTATTTATTAGAGGTAATTAAGTAATTATTATTAGAGGTACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAGGTAATGGCAGCCTCGCCGGAGTCGTCTCCGTCGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAATCAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGTCTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGTCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGATGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACGTGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGAACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCACCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGGCGAGGCCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAATCATCACTAATTCTTTTATTTATCGATTTAAATTATAATTAGCTGGTTTCACAAATCACCCTACACTCGTGGAGAAACCATCTTTACTCCCGGTTGGATATCCATTTAATCCCGGTTTTCCAACCGGGAGTAAGGATCCGGGACTAACCGGGACTAAAGATGTATCCTTAGCCACCAACCAGGACTAAAAAGAAGGGATCAACCGGGACTAAACAGACAATA]
[+] EMBL AK100339 [CCCTCTTCCCTTTGGCCCTGTTGCCCCCAATTCGCCTTCGACCCCTTCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGGGTTCACAAATTTTTTCAATTGTGTTCTTATTTATTAGAGGTAATTAAGTAATTATTATTAGAGGTACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAGGTAATGGCAGCCTCGCCGGAGTCGTCTCCGTCGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAATCAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGTCTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGTCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGATGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACGTGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGAACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCACCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGGCGAGGCCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAATCATCACTAATTCTTTTATTTATCGATTTAAATTATAATTAGCTGGTTTCACAAATCACCCTACACTCGTGGAGAAACCATCTTTACTCCCGGTTGGATATCCATTTAATCCCGGTTTTCCAACCGGGAGTAAGGATCCGGGACTAACCGGGACTAAAGATGTATCCTTAGCCACCAACCAGGACTAAAAAGAAGGGATCAACCGGGACTAAACAGACAATA]
[+] EMBL AK071821 [CCCTCTTCCCTTTGGCCCTGTTGCCCCCAATTCGCCTTCGACCCCTTCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGGGTTCACAAATTTTTTCAATTGTGTTCTTATTTATTAGAGGTAATTAAGTAATTATTATTAGAGGTACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAGGTAATGGCAGCCTCGCCGGAGTCGTCTCCGTCGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAATCAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGTCTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGTCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGATGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACGTGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGGACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCT CACCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGGCGAGACCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAATCATCACTAATTCTTTTATTTATCGATTCAAATTATAATT ]
consensusID : consensus_6939#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence
[GACATCATCAGCCGGGTGCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACGAGTTCGTCCCAAACAAGACCCTCGAGTTCCACCTCCATGGGAAAGGCTTGCNGGTGATGCCATGGCCGACGAGGCTGCGCATTGCGTCGGGTCGGCGAAGGGGCTCGCCTACCTACACGAAGACTGCCATCCTCGGATCATCCANCGCGACATCAAATCCGCCA]
[+] EMBL AU056321 [GACATCATCAGCCGGGTGCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACGAGTTCGTCCCAAACAAGACCCTCGAGTTCCACCTCCATGGGAAAGGCTTGCNGGTGATGCCATGGCCGACGAGGCTGCGCATTGCGTCGGGTCGGCGAAGGGGCTCGCCTACCTACACGAAGACTGCCATCCTCGGATCATCCANCGCGACATCAAATCCGCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6939#0 CAAAAGCTAGCTGTCTGGGAGATGGTGGTGGATGAAGGGATGTGCTGCTAGCAGAAATGG 60
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ------------------------------------------------------------
consensus_6939#0 TGATCGGGAGCAAATGTGGGTTGATGATTCTCGTACCAGAAGCATTGTTTGATACGATTT 120
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ------------------------------------------------------------
consensus_6939#0 TGATCAGCTGGCGGGAGAGGAAACATGTCATCGGAATCGGATCAAGCCCCCTCGCCAAGC 180
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ------------------------------------------------------------
consensus_6939#0 TCGCCCTCGTCGTCGTCGTCGTCGTCGTCAGGAAATGGTTCCAACAAGGCGCCTCCGCCG 240
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ------------------------------------------------------------
consensus_6939#0 GAAGAGTCTGATAATTCGAGCAGCAATGGGTCGTCGTCGTCTAGCCCGACACCTCCTTCG 300
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ------------------------------------------------------------
consensus_6939#0 TCGCAGAGCTCCGACTCCGACTCCGGAGGAGGCTCGAGTTCGCCGTCACAAGGCTCGTCC 360
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ------------------------------------------------------------
consensus_6939#0 TCGCCTAGCCCGCCTCCGCCGTCGGGGAGCTCTTCCGAGTCGCATTCGTCTCCACCGCCG 420
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 -----------CCCTCTTCCCTTTGG---CCCTGTTGCCCCCAATTCGCCTTCGACCCCT 46
consensus_6939#0 GCGCCGCCCCAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGGTGGAGGTTCCAAG 480
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 TCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGG-GTTCACAAA 105
consensus_6939#0 TCTTCGCCGGAGGCACCGTCTCCGCCATCCGAGTCATCTGGAAATGGTGGCGGTGGCGGC 540
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 TTTTTTC---AATTGTGTTCTTATTTATTAGAGGTAATTAAGTA-ATTATTATTAGAGGT 161
consensus_6939#0 GGCGGCGGCCGCTCCTCGCCGCCGCCAAACTGGTCGCCCCCTCCGCAGCAGCAGCAGCAG 600
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAG--GTAATGGCAG 219
consensus_6939#0 CACCAGTCCGGAGGCTCAACTCCATCACCTCCTCCGTCTCCGTCCTCTAACCAGCCACCG 660
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 CCTCG--CCGGAG--TCGTCTCCGTCG--TCGGCCAACTCCA----CCACCCCGTCAGCA 269
consensus_6939#0 CCATCGAGTGGCTCGTCAGCGTCATCGTCGGAACCATCTCCGCCTCGCTCATCGCCGCCG 720
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 CCGTCG------CCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCC------CCA 317
consensus_6939#0 CCATCGCCGCCGCAATCAAGTGGCGGCAATAATGGCCAACCGCCTAAACCTTCCGGCGGG 780
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 TCATCGCCGCCGCCACCA----GCATCGACGAACGC--GCCACCAAAATCAGCTGGCGGC 371
consensus_6939#0 CAGCAGCAAGCTCCTCCGCAGTCACCTCCGTCGGCGGCGAACCAGTCGGTGGTGTTCATT 840
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 --GTTTCAT-CTTCCACGCAAGCGCAACCATCGTCGG--AATCA-TCGTCGGAGTCTACG 425
consensus_6939#0 CCCGTCCCGGTGGCGTCGAACAGCCCTCCCGGAATGCTGCCGCCACCGCAGGTGATCGAC 900
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ACTACGCCTTCGGCGCC----AGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGA--GAG 479
consensus_6939#0 GCCACGCCCTCCGGCGCCATCTCGTCGACCAACTTCCCCGGAGGAAGAAACAGCACGGCG 960
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 TCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCG 539
consensus_6939#0 GGCTCCTCCAACACTTCATTGTCACAGCAGCAACACACAACCGTAAGCTCGACGGCCCAG 1020
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 A-TGGTTGCGGTG-TTGGCGGGTGTGGTGGC----CATCGTGGTGTGCT--GCTGTATAA 591
consensus_6939#0 GCCAGCAGCAGCGGCCACATAGCCGCCGCCATCGCCGGCGCCGCGGTCACGGGCCTCCTG 1080
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 A--GATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGA--------ACATGCCCTTCTTC 641
consensus_6939#0 TGTGCCATAGTGGCCATCTACCTCATCGTGTCGAGCCGGAGGAAGAAGAAGATGGATGGG 1140
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ACCGACGAGAAGGGCAACG-------TGTACTACGCCACAGGCGGCCTGCCTCCCATGTG 694
consensus_6939#0 CTGGTCTACCACTACGATGGCAACAACTACTTCGTGCCATCGTCTCAGTTTGGCGGGTCA 1200
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 GCAG-----CAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCC---------- 739
consensus_6939#0 AGCCGCAACCACCACCCACCACCGTCGGCGATTATGCTCAACTCCGGTGGGGCGTCAGCG 1260
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 -GCC-CGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGG 797
consensus_6939#0 GACGGCGGCGGGTAC-TACAATTCGGGGACATTCTCGGGCGGAGAGGGGACAGGGCCGGC 1319
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 TACT-CGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGAACGTGGCGCTGGG 856
consensus_6939#0 GGGGTCCAAGTCGCGGTTCAGCTACGAGGAGCTGACGGGGATCACCAGCAACTTCTCGCG 1379
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 TTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGC 916
consensus_6939#0 GGACAACGTGATCGGCGAGGGCGGGTTTGGGTGCGTGTACAAGGGGTGGCTAAGCG---A 1436
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 GGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAA 976
consensus_6939#0 CGGCAAGTGCGTGGCCGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGGGAGCGGGAGTT 1496
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 CGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTT 1036
consensus_6939#0 CCAGGCGGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCACCTCGTCTCCCTCGTCGG 1556
consensus_6939#2 -------------GACATCATCAGCCGGGTGCACCACCGCCACCTCGTCTCCCTCGTCGG 47
consensus_6939#1 CCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGG 1096
** *********** ** ***************** ** ** ** **
consensus_6939#0 CTACTGCATCGCCGCGCACCACCGCATGCTCATCTACGAGTTCGTTCCCAACGGCACCCT 1616
consensus_6939#2 CTACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACGAGTTCGTCCCAAACAAGACCCT 107
consensus_6939#1 ATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCT 1156
************* * *** ***** ************* ** *** *****
consensus_6939#0 CGAACACCACCTTCAT------GGCCGTGGCATGCCAGTGATGGACTGGCCGACGAGGCT 1670
consensus_6939#2 CGAGTTCCACCTCCAT------GGGAAAGGCTTGCNGGTGATGCCATGGCCGACGAGGCT 161
consensus_6939#1 CGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCA 1216
*** ****** ** ** *** * ** * *** ** ** ***
consensus_6939#0 GCGGATTGCCATTGGTGCAGCCAAGGGGCTAGCATACCTACACGAGGACTGCCACCCGCG 1730
consensus_6939#2 GCGCATTGC-GTCGGGTCGGCGAAGGGGCTCGCCTACCTACACGAAGACTGCCATCCTCG 220
consensus_6939#1 CAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCG 1276
* ** ** * ** * ** ***** ** ** ***** ***** ******** ** **
consensus_6939#0 GATTATCCACCGGGACATCAAGACCGCCAATATCCTACTGGACTACTCGTGGGAAGCACA 1790
consensus_6939#2 GATCATCCANCGCGACATCAAATCCGCCA------------------------------- 249
consensus_6939#1 GATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCAT 1336
*** ***** ** ******** * ****
consensus_6939#0 GGTGGCAGACTTTGGGCTTGCGAAGCTGGCGAATGATACGCACACTCACGTGTCGACGCG 1850
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 GGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCG 1396
consensus_6939#0 CATCATGGGCACCTTCGGGTACCTAGCGCCAGAGTACGCCTCCAGCGGCAAGCTCACGGA 1910
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 CGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCACCGGCAAGCTCACCGA 1456
consensus_6939#0 CCGCTCCGACGTCTTCTCCTTTGGTGTCGTCCTACTGGAGCTCATCACCGGCCGCAAGCC 1970
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 GAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCC 1516
consensus_6939#0 GGTTGACCAGACGCAGCCCCTCGGAGAGGAGAGCCTCGTCGAATGGGCACGACCAGTGCT 2030
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 CGTCGAC-ACCTCCAACTACATGGAG--GACAGCCTCGTGGACTGGGCGAGGCCGGTGCT 1573
consensus_6939#0 GGCGGAT-------------GCGGTAGAGACGGGTGATC--TCAGTGAGCTGGTTGATCC 2075
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 GGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTC 1633
consensus_6939#0 ACGGCTAGAGGGCGCATACAACCGCAATG-AGATGATGACGATGGTGGAAGCAGCGGCCG 2134
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 GCGGCTGGGCGGGGAGTACT-CGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGG 1692
consensus_6939#0 CATGTGTTCGCCACTCCGCTCCCAAACGGCCGCGGATGGTGCAGGTGATGCGGGTACTAG 2194
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 CGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGG 1752
consensus_6939#0 ATGAGGGGAGCATGACGGACCTTAGCAATGGGATCAAGGTGGGGCAGAGCCAAGTGTTCA 2254
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 A-GGGGGACGCCTCGC-----------------TCTCGCTGGACCACCACCACGA---CG 1791
consensus_6939#0 CTGGTGGCAGCGACGCTGCTGACATCCAGCAACTCCGTCGTATCGCATTCGCCTCCGAGG 2314
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCG 1851
consensus_6939#0 AGTTCACCGGAGAGTTTGAGCAGAGAACAACCAACTCCAACTCTGAGTCGCGGCCGATGA 2374
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ACTACACCGACGACTAC---------TCCACCACCTCCACCTCC-ACCCACTCCTCCCGC 1901
consensus_6939#0 ATCGGATACCAGAGTAATAACGCCTTGTATGTTTTGAAGTGCTTAGCACCGGTGCAATTA 2434
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 CTCCCACCCAAGCGCTA-ATCATCACTAATTCTTTTATTTATCGATTTAAATTATAATTA 1960
consensus_6939#0 CGTGATAAGGGTGACAACAAGAGGTGAGTCCATATAGAACTGAACTGAACTCAAAAACAC 2494
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 GCTGGT----TTCACAAATCACCCTACACTCGTGGAGAAACCATCTTTACTC-------C 2009
consensus_6939#0 ATGTAGGAAATTCAGGGTTTTGGGTCTAATTTTCGGCAGTTTGTACTTATGTACTTCAAA 2554
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 CGGTTGGATATCCA----TTTAATCCCGGTTTTC--CAACCGGGAGTAAGGA--TCCGGG 2061
consensus_6939#0 ACCCTTTTGCACATGGAGGACATTCA-ATCAAGTGATAAAGATATAGGGAAATCAGTCTA 2613
consensus_6939#2 ------------------------------------------------------------
consensus_6939#1 ACTAACCGGGACTAAAGATGTATCCTTAGCCACCAACCAGGACTAAAAAGAAGGGATCAA 2121
consensus_6939#0 TTAGGATCCATAATGGTTTGCTAAGCACATACCATCAGC 2652
consensus_6939#2 ---------------------------------------
consensus_6939#1 CCGGGACTAAACAGACAATA------------------- 2141
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||