cluster # 6940

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Oryza sativa
cluster # 6940 cluster # 6940 Sequences # 4 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6940#0 length = 1148 sequences # 4
consensusID : consensus_6940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1148
fasta sequence
                              [TTTTTTTTTTTTTAGCACCAAACAAACATCATTTCGCCATGCAACTGGCCTGATAATCTTAAAACATATGGAACGCCAGAATGCTTTGATCAGCATGTTTACAATCACAAACCACACTCTGTCACCATGTTCACAACATGGGACATGAGGTCAAACACATGCACAGGGTAGTCAGTAATGTATACAATCCGTCCAGCTTGTCCTGACAATCAAGAATAATCTGATAGATCTACATTTCCACAGCATGTAAACATGAGTAAAAAGTTGGGTAAAATGTACAACAGTCCGTATAGTGGTGACTTTGGAAGTACATGCCGCTGCCAGCTC-TTCGTTTGCTCCAAAGTNCCAGCCTT-GAAATCTGACAAACATTTCAGAGCAATAGTTCCTTCT-GACAGCACTTGTGAGAACTCATATTCTAACAAATATTACTTGAGCTCAGTATCAAGAATGGGACTTGACAAACACATACTAGGAGCTTTTGCTGTTTACTTCCAGAATCCTGGCATGCAGTCACCTGTATGGATGTGTTCCCAAATGATCTAGATTTTGTCTAGACCAAGGCTCCTCACAATCATGACCCTGACTCCGCGATTTCACCACCAGATGATTCTGGTTTGGTA-TCCACATTTTCAGGATACAAATCTGATTTTACTTCATCAGATGAAGCAGACACCTTTTCCCCAGAGTCTGTGATAACCGTTT-CAGATTTTTCATTGGCAACCAACACCTTGT-CACAAG-CCTT-ATTTGATTTATCCTTCTGTACCATCTGAAATATTATTCAAGTTGGAATCCATCTACGGAAGAAATATTTTCATCCAGCGCATCACCCGTGGCCCTTCTAATTTCTCCAGAGGTATCATTTTCCTCTTCACCTGCTGAACCAGCGATCTCATTCGATAAGTACAAGTCATAATTCTTGCTTTCCCTACTCACAAATTGGTCACCGTGAATCTGCTGTGATTCATCATCCGTCTCTTCTTTAGTAACATGAGCTGATGATCCTGTGCAATGAACTTTTGGATGTTTTGGGGATTCCTCATGATCCTTACAGGAGAACTCTTGAGATTTGCTCTCGACCTGTTGTGCAGTATCTGAGAAATGTGAAGTGGAGGGTTCTTTAAGATATTTATCAAAAGAACTTAGGCCTT]

[+] EMBL CA761947             [TTTTTTTTTTTTTAGCACCAAACAAACATCATTTCGCCATGCAACTGGCCTGATAATCTTAAAACATATGGAACGCCAGAATGCTTTGATCAGCATGTTTACAATCACAAACCACACTCTGTCACCATGTTCACAACATGGGACATGAGGTCAAACACATGCACAGGGTAGTCAGTAATGTATACAATCCGTCCAGCTTGTCCTGACAATCAAGACTAATCTGATAGATCTACATTTCCACAGCATGTAAACATGAGTAAAAAGTTGGGTAAAATGTACAACAGTCCGTATAGTGGTGACTTTGGAAGTACATGCCGCTGCCAGCTC TTCGTTTGCTCCAAAGT CCAGTCTT GAAATCTGAC  ACATTTCAGAGCAATAGTTCCTTCT GACAGCACTTGTGAGAACTCATATTCTAACAAATATTACTTGAGCTCAGTATCAAGAATGGGACTTGACAAACACATACTAGGAGCTTTTGCTGTTTACTTCCAGAATCCTGGCATGCAGTCACCTGTATGGATGTGTTCCCAAATGATCTAGATTTTGTCTAGACCAAGGCTCCTCACAATCATGACCCTGACTCCGCGATTTCACCACCAGATGATTCTGGTTTGGTA TCCACATTTTCAGGATACAAATCTGATTTTACTTCATCAGATGAAGCAGACACCTTTTCCCCAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL AU056361             [TTTTTTTTTTTTTAGCACCAAACAAACATCATTTCGCCATGCAACTGGCCTGATAATCTTAAAACATATGGAACGCCAGAATGCTTTGATCAGCATGTTTACAATCACAAACCACACTCTGTCACCATGTTCACAACATGGGACATGAGGTCAAACACATGCACAGGGTAGTCAGTAATGTATACAATCCGTCCAGCTTGTCCTGACAATCAAGAATAATCTGATAGATCTACATTTCCACAGCATGTAAACATGAGTAAAAAGTTGGGTAAAATGTACAACAGTCCGTATAGTGGTGACTTTGGNAGTACATGCCGCTGCCANCTCTTTCGTTTGCTCCAAAGTNCCAGCCTTGGAAATCTGACAAACATTTCAGAGCAATAGTTCCTTCTGGACAGCACTTGTGAGAACTCATATTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB663996             [                      CAAACATCATTTCGCCATGCAACTGGCCTGATAATCTTAAAACATATGGAACGCCAAAATGCTTTGATCAGCATGTTTACAATCACAAACCACACTCTGGCACCATGTTCACAACATGGGACATGAGGTCAAACACATGCACAGGGTAATCAGTAATGTATACAATCCGTCCAGCTTGTCCTGACAATCAAGAATAATCTGATAGATCTACATTTCCACAGCATGTAAACATGAGAAAAAAGTTGGGTAAAATGTACAACAGTCCGTATAGTGGTGACTTTGGAAGTACATGCCGCTGCCAGCTC TTCGTTTGCTCCAAAGTCACAGCCTT GAAATCTGACAAACATTTCAGAGCAATAGTTCCTTCT GACAGCACTTGTGAGAACTCATATTCTAACAAATATTACTTGAGCTCAGTATCAAGAATGGGACTTGACAAACACATACTAAGAGCTTTTGCTGTTTACTTCCAGAATCCTGGCATGCAGCCACCTGTATGGATGTGTACCCAAATGATCTAGATTTTGTCTAGACCAAGGCTCCTCACAATCATGACCCTGACTCCGCGATTTCACCACCAGATGATTCTGGTTTGGTA TCCACATTTTCAGGATACAAATCTGATTTTACTTCATCAGATGAAGCAGACACCTTTTCCCCAGAGTCTGTGATAACCGTTT CAGATTTTTCATTGGCAACCAACACCTTGT CACAAG CCTT ATTTGATTTATCCT                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AU056360             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     acCCACCAGATGATCCTGGTTTGGTANCCCACATTTTCAGGATACAAATCTGATTTTACTTCATCAGATGAAGCAGACACCTTTTCCCCAGAGTCTGTGATAACCGTTTCCAGATTTTTCATTGGCAACCAACACCTTGTCCACAAGCCCTTNATTTGATTTATCCCTCTGTACCATCTGAAATATTATTCAAGTTGGAATCCATCTACGGAAGAAATATTTTCATCCAGCGCATCACCCGTGGCCCTTCTAATTTCTCCAGAGGTATCATTTTCCTCTTCACCTGCTGAACCAGCGATCTCATTCGATAAGTACAAGTCATAATTCTTGCTTTCCCTACTCACAAATTGGTCACCGTGAATCTGCTGTGATTCATCATCCGTCTCTTCTTTAGTAACATGAGCTGATGATCCTGTGCAATGAACTTTTGGATGTTTTGGGGATTCCTCATGATCCTTACAGGAGAACTCTTGAGATTTGCTCTCGACCTGTTGTGCAGTATCTGAGAAATGTGAAGTGGAGGGTTCTTTAAGATATTTATCAAAAGAACTTAGGCCTT]




>consensus_6940#0
TTTTTTTTTTTTTAGCACCAAACAAACATCATTTCGCCATGCAACTGGCCTGATAATCTT
AAAACATATGGAACGCCAGAATGCTTTGATCAGCATGTTTACAATCACAAACCACACTCT
GTCACCATGTTCACAACATGGGACATGAGGTCAAACACATGCACAGGGTAGTCAGTAATG
TATACAATCCGTCCAGCTTGTCCTGACAATCAAGAATAATCTGATAGATCTACATTTCCA
CAGCATGTAAACATGAGTAAAAAGTTGGGTAAAATGTACAACAGTCCGTATAGTGGTGAC
TTTGGAAGTACATGCCGCTGCCAGCTCTTCGTTTGCTCCAAAGTNCCAGCCTTGAAATCT
GACAAACATTTCAGAGCAATAGTTCCTTCTGACAGCACTTGTGAGAACTCATATTCTAAC
AAATATTACTTGAGCTCAGTATCAAGAATGGGACTTGACAAACACATACTAGGAGCTTTT
GCTGTTTACTTCCAGAATCCTGGCATGCAGTCACCTGTATGGATGTGTTCCCAAATGATC
TAGATTTTGTCTAGACCAAGGCTCCTCACAATCATGACCCTGACTCCGCGATTTCACCAC
CAGATGATTCTGGTTTGGTATCCACATTTTCAGGATACAAATCTGATTTTACTTCATCAG
ATGAAGCAGACACCTTTTCCCCAGAGTCTGTGATAACCGTTTCAGATTTTTCATTGGCAA
CCAACACCTTGTCACAAGCCTTATTTGATTTATCCTTCTGTACCATCTGAAATATTATTC
AAGTTGGAATCCATCTACGGAAGAAATATTTTCATCCAGCGCATCACCCGTGGCCCTTCT
AATTTCTCCAGAGGTATCATTTTCCTCTTCACCTGCTGAACCAGCGATCTCATTCGATAA
GTACAAGTCATAATTCTTGCTTTCCCTACTCACAAATTGGTCACCGTGAATCTGCTGTGA
TTCATCATCCGTCTCTTCTTTAGTAACATGAGCTGATGATCCTGTGCAATGAACTTTTGG
ATGTTTTGGGGATTCCTCATGATCCTTACAGGAGAACTCTTGAGATTTGCTCTCGACCTG
TTGTGCAGTATCTGAGAAATGTGAAGTGGAGGGTTCTTTAAGATATTTATCAAAAGAACT
TAGGCCTT
clustalw multiple alignements is not computed in this case