These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 841 fasta sequence [AGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGCTGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAGGTGGATGGGTCCTGCGCGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACTTACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAGACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTCAACATCTGAACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATGGGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTT-CCTTTTACTTATGGCATCTAACCTGTTACAAGAGGTCCGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTAGGTCAATACATGGATATCCATTTACCCAAGCTAGCTGAACTAATAGTCAGATGAGTTCATTTTTAGTTGATTCAGTTGAACTAAAGTGGGTCAATGGGTACCTATATATTGACCCACCATCCCTATTTAGCTATTTTTTATAGACTGGTTGCGCTCGAGTTGGAACTCTGAACCTTTTCATAGTTGATGTATGTTTACTCACTGAAGTGAACATGGCCGCAC] [+] EMBL CF307332 [AGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGCTGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAGGTGGATGGGTCCTGCGCGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACTTACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAGACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTCAACATCTGAACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATGGGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTT CCTTTTACTTATGGCATCTAAC ] [+] EMBL CB644987 [ TATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAGGTGGATGGGTCCTGCGCGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACTTACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAGACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTCAACATCTGAACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATGGGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTTCCCTTTTACTTATGGTGAGAAATCTGTTACAAGAGGTCCGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTAGGTCAATACATGGATATCCATTTACCCAAGCTAGCTGAACTAATAGTCAGATGAGTTCATTTTTAGTTGATTCAGTTGAACTAAAGTGGGTCAATGGGTACCTATATATTGACCCACCATCCCTATTTAGCTATTTTTTATAGACTGGTTGCGCTCGAGTTGGAACTCTGAACCTTTTCATAGTTGATGTATGTTTACTCACTGAAGTGAACATGGCCGCAC] consensusID : consensus_6941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [TCAAGTTGTCAGATGGAAAAGTAGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGCTGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAGGTGGATGGGTCCTGCGAGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGGTGATTAACAATGAATTTGTGCTGGTATCTACCTATTCAGTTTGAAATTAACAGTCTCTAGTTGTTTTTCAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACTTACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAGACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTTAACATCTGAACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATGGGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTTCCCTTTTACTTATGGTGAGAAATCTGTTACAAGAGGTCCGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTANGTCAATAC] [+] EMBL CB620015 [TCAAGTTGTCAGATGGAAAAGTAGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGCTGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAGGTGGATGGGTCCTGCGAGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGGTGATTAACAATGAATTTGTGCTGGTATCTACCTATTCAGTTTGAAATTAACAGTCTCTAGTTGTTTTTCAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACTTACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAGACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTTAACATCTGAACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATGGGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTTCCCTTTTACTTATGGTGAGAAATCTGTTACAAGAGGTCCGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTANGTCAATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6941#0 ----------------------AGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGC 38 consensus_6941#1 TCAAGTTGTCAGATGGAAAAGTAGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGC 60 ************************************** consensus_6941#0 TGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAG 98 consensus_6941#1 TGCTTCGTTTGCAGGATATGGATTTTATGGAGAAGTTATAAGGGAGAGTGAAAAGTACAG 120 ************************************************************ consensus_6941#0 GTGGATGGGTCCTGCGCGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAG--- 155 consensus_6941#1 GTGGATGGGTCCTGCGAGATATGACTTCTCTGGAACAATGGTATTTTTGAAGCACAGGTG 180 **************** **************************************** consensus_6941#0 ------------------------------------------------------------ consensus_6941#1 ATTAACAATGAATTTGTGCTGGTATCTACCTATTCAGTTTGAAATTAACAGTCTCTAGTT 240 consensus_6941#0 ---------ATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACT 206 consensus_6941#1 GTTTTTCAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATTCACT 300 *************************************************** consensus_6941#0 TACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAG 266 consensus_6941#1 TACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAAATAG 360 ************************************************************ consensus_6941#0 ACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTCAACATCTGA 326 consensus_6941#1 ACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTTAACATCTGA 420 ************************************************** ********* consensus_6941#0 ACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATG 386 consensus_6941#1 ACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAAAATG 480 ************************************************************ consensus_6941#0 GGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGA 446 consensus_6941#1 GGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTAACGA 540 ************************************************************ consensus_6941#0 AAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCT 506 consensus_6941#1 AAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCT 600 ************************************************************ consensus_6941#0 GCTCATTAGAGATTGCCCTCTTCC-TTTTACTTATGGCATCTAACCTGTTACAAGAGGTC 565 consensus_6941#1 GCTCATTAGAGATTGCCCTCTTCCCTTTTACTTATGGTGAGAAATCTGTTACAAGAGGTC 660 ************************ ************ ** *************** consensus_6941#0 CGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTAGGTCAA 625 consensus_6941#1 CGGTGTGCGTATTATCCCAAGTTTAAAAAGTTTTCTTAATTTAGGAAGGGAGTANGTCAA 720 ****************************************************** ***** consensus_6941#0 TACATGGATATCCATTTACCCAAGCTAGCTGAACTAATAGTCAGATGAGTTCATTTTTAG 685 consensus_6941#1 TAC--------------------------------------------------------- 723 *** consensus_6941#0 TTGATTCAGTTGAACTAAAGTGGGTCAATGGGTACCTATATATTGACCCACCATCCCTAT 745 consensus_6941#1 ------------------------------------------------------------ consensus_6941#0 TTAGCTATTTTTTATAGACTGGTTGCGCTCGAGTTGGAACTCTGAACCTTTTCATAGTTG 805 consensus_6941#1 ------------------------------------------------------------ consensus_6941#0 ATGTATGTTTACTCACTGAAGTGAACATGGCCGCAC 841 consensus_6941#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||