These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1440 fasta sequence [CAGGAGTTCTCTGAATTCTGATGGAAACCAACACTCCTCCAAAGTCTGGGACAAGCTTTCTCAAGACTTGCTTCAATGGTGTCAATGCCCTCTCAGGTGTTGGGATACTATCCATGCCTTACGCATTGTCCCAGGGAGGATGGCTGAGCCTAGCAATCTTCATAACCATAGCAGCGATCTGCTTCTACACGGGGATCCTCCTGCAGCGATGCATCGACTCCAGCTCCCTCGTCAAGACCTACCCGGACATCGGCGAGCTGGCGTTCGGCCGGAAGGGCAGGATCGCCGTCGCCGCCTTCATGTATCTCGAGCTCTACCTCGTCGCCATCGACTTCCTCATCCTGGAGGGGGACAACCTGGAGAAGCTGTTCCCGAACGCGAGCTTCTTCTCCTCCTTCCACAGGATCGCCGGCGGGACGAGGCAAGGGTTCGTGCTGCTGTTCGCGCTGCTCGT-GCTGCCCACGACGT-GGTTCCGGAGCCTCGACCTCCTGGCGTACGTCTCCCT-GGGCGGCGTCCTGGCGTCCGCCATCCTCGTCGCGTCCGT-GCTCTGGGTCGGCGCCGCCGACGGCGTC-GGGTTCCGCGAGGGCGGCGTGGCGGTGAGGTGGGGTGGCGTCCCGACCGCCATGAGCCTGTACGCGTTCTGCTTCAGTGGCCATGCGGTTTTCCCCATGATTTATACCGGCATGAGGAACAGGAGAATGTTTCCACATGTGCTGCTCATCTGCTTCATCATCTGCACCCTCGCCTACGGCGTGATGGGCGTCATCGGCTACCTCATGTACGGCGGCTCGCTCCGGTCGCAGGTGACGCTCAACCTGCCGGCGAGGAAGCTGAGCTCCAGCATCGCCATCTACACGACGCTCATCAACCCCTTCACCAAGTTCGCCCTCCTCATCACCCCGATCGCCGAGGCCATCGAGGGCGTCCTCGGCCTCGGCACCGCCACCACCGGCGGCAAGCCGGCGCAGTACAGGGCCGCGGCCGTGAGCGTGTCGGTGAGGACGGCGCTGGTGGTGAGCACCACGGCGGTGGCGCTCGCCGTGCCCTTCTTCGCCTACGTGGTGGCGCTCACCGGCTCGTTCCTCAGCGCCACCGCGACGATGCTGCTGCCGTGCGCGTGCTACCTCCGGATCAGCTCCAGGGCCTCCGGGAAGCTGGGGGTGCTCGAGATCGTGGCTTGCGTGGGGATCATCGTGCTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGCTTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAATTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGTTATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAAAAAAAAAAAAAAGA] [+] EMBL AK107472 [CAGGAGTTCTCTGAATTCTGATGGAAACCAACACTCCTCCAAAGTCTGGGACAAGCTTTCTCAAGACTTGCTTCAATGGTGTCAATGCCCTCTCAGGTGTTGGGATACTATCCATGCCTTACGCATTGTCCCAGGGAGGATGGCTGAGCCTAGCAATCTTCATAACCATAGCAGCGATCTGCTTCTACACGGGGATCCTCCTGCAGCGATGCATCGACTCCAGCTCCCTCGTCAAGACCTACCCGGACATCGGCGAGCTGGCGTTCGGCCGGAAGGGCAGGATCGCCGTCGCCGCCTTCATGTATCTCGAGCTCTACCTCGTCGCCATCGACTTCCTCATCCTGGAGGGGGACAACCTGGAGAAGCTGTTCCCGAACGCGAGCTTCTTCTCCTCCTTCCACAGGATCGCCGGCGGGACGAGGCAAGGGTTCGTGCTGCTGTTCGCGCTGCTCGT GCTGCCCACGACGT GGTTCCGGAGCCTCGACCTCCTGGCGTACGTCTCCCT GGGCGGCGTCCTGGCGTCCGCCATCCTCGTCGCGTCCGT GCTCTGGGTCGGCGCCGCCGACGGCGTC GGGTTCCGCGAGGGCGGCGTGGCGGTGAGGTGGGGTGGCGTCCCGACCGCCATGAGCCTGTACGCGTTCTGCTTCAGTGGCCATGCGGTTTTCCCCATGATTTATACCGGCATGAGGAACAGGAGAATGTTTCCACATGTGCTGCTCATCTGCTTCATCATCTGCACCCTCGCCTACGGCGTGATGGGCGTCATCGGCTACCTCATGTACGGCGGCTCGCTCCGGTCGCAGGTGACGCTCAACCTGCCGGCGAGGAAGCTGAGCTCCAGCATCGCCATCTACACGACGCTCATCAACCCCTTCACCAAGTTCGCCCTCCTCATCACCCCGATCGCCGAGGCCATCGAGGGCGTCCTCGGCCTCGGCACCGCCACCACCGGCGGCAAGCCGGCGCAGTACAGGGCCGCGGCCGTGAGCGTGTCGGTGAGGACGGCGCTGGTGGTGAGCACCACGGCGGTGGCGCTCGCCGTGCCCTTCTTCGCCTACGTGGTGGCGCTCACCGGCTCGTTCCTCAGCGCCACCGCGACGATGCTGCTGCCGTGCGCGTGCTACCTCCGGATCAGCTCCAGGGCCTCCGGGAAGCTGGGGGTGCTCGAGATCGTGGCTTGCGTGGGGATCATCGTGCTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGCTTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAATTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGTTATGCATAAATCACTTGAGAAAGAAATCCATATGCCGT ] [+] EMBL AU056478 [ CAGGTGTTGGGATACTATCCATGCCTTACGCATTGTCCCAGGGAGGATGGCTGAGCCTAGCAATCTTCATAACCATAGCAGCGATCTGCTTCTACACGGGGATCCTCCTGCAGCGATGCATCGACTCCAGCTCCCTCGTCAAGACCTACCCGGACATCGGCGAGCTGGCGTTCGGCCGGAAGGGCAGGATCGCCGTCGCCGCCTTCATGTATCTCGAGCTCTACCTCGTCGCCATCGACTTCCTCATCCTGGAGGGGGACAACCTGGAGAAGCTGTTCCCGAACGCGAGCTTCTTCTCCTCCTTCCACAGGATCGCCGGCGGGACGAGGCAAGGGTTCGTGCTGCTGTTCGCGCTGCTCGTGGCTGCCCACGAAGTGGGTTCCGGAGCCTNGACCTCCTGGCGTACGTCTCCCTGGGGCGGCGTCCTGGCGTCCGCCATCCTCGTCGCGTCCGTGGCTCTGGGTCGGCGCCGCGAAAGGNTTCGGGGTTCCGCGAGGGCGGCGTGGCGGTGANGTG ] [-] EMBL CB620995 [ GCGGTTTTCCCCATGATTTATACCGGCATGAGGAACAGGAGAATGTTTCCACATGTGCTGCTCATCTGCTTCATCATCTGCACCCTCGCCTACGGCGTGATGGGCGTCATCGGCTACCTCATGTACGGCGGCTCGCTCCGGTCGCAGGTGACGCTCAACCT CGGCGAGGAAGNTGAGCTCCAGCATCGCCATTTACACGACGCTCATCAACCCCTTCACCAAGTTCGCCCTCCTCATCACCCCGATCGCCGAGGCCATCGAGGGCGTCCTCGGCCTCGGCACCGCCACCACCGGCGGCAAGCCGGCGCAGTACAGGGCCGCGGCCGTGAGCGTGTCGGTGAGGACGGCGCTGGTGGTGAGCACCACGGCGGTGGCGCTCGCCGTGCCCTTTTTCGCCTACGTGGTGGCGCTCACCGGCTCGTTCCTCAGCGCCACCGCGACGATGCTGCTGCCGTGCGCGTGCTACCTCCGGATCAGCTCCAGGGCCTCCGGGAAGCTGGGGGTGCTCGAGATCGTGGCTTGCGTGGGGATCATCGTGCTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGCTTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAATTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGTTATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAAAAAAAAAAAAAAGA] consensusID : consensus_6948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [CTCGCCGTGCCCTTCTTCGCNTACGTGGTGGCGCTCACCGGCTCCTTTCCTCAGCGCCACCGCGAACGATGCTGCTGCCCGTNCGCGTGCTACCTCCGGATCAGCTCCAGGNCCTCCCGGGAANCTGGGGGTGCCCGAGATCGTGGCTTGCGTGGGGATCATCGTGCTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGCTTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAATTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGTTATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAGGAAGATGATTCTACTNGTGGAGATTGATTTTTTTTTCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU056479 [CTCGCCGTGCCCTTCTTCGCNTACGTGGTGGCGCTCACCGGCTCCTTTCCTCAGCGCCACCGCGAACGATGCTGCTGCCCGTNCGCGTGCTACCTCCGGATCAGCTCCAGGNCCTCCCGGGAANCTGGGGGTGCCCGAGATCGTGGCTTGCGTGGGGATCATCGTGCTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGCTTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAATTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGTTATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAGGAAGATGATTCTACTNGTGGAGATTGATTTTTTTTTCAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6948#0 CAGGAGTTCTCTGAATTCTGATGGAAACCAACACTCCTCCAAAGTCTGGGACAAGCTTTC 60 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 TCAAGACTTGCTTCAATGGTGTCAATGCCCTCTCAGGTGTTGGGATACTATCCATGCCTT 120 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 ACGCATTGTCCCAGGGAGGATGGCTGAGCCTAGCAATCTTCATAACCATAGCAGCGATCT 180 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 GCTTCTACACGGGGATCCTCCTGCAGCGATGCATCGACTCCAGCTCCCTCGTCAAGACCT 240 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 ACCCGGACATCGGCGAGCTGGCGTTCGGCCGGAAGGGCAGGATCGCCGTCGCCGCCTTCA 300 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 TGTATCTCGAGCTCTACCTCGTCGCCATCGACTTCCTCATCCTGGAGGGGGACAACCTGG 360 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 AGAAGCTGTTCCCGAACGCGAGCTTCTTCTCCTCCTTCCACAGGATCGCCGGCGGGACGA 420 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 GGCAAGGGTTCGTGCTGCTGTTCGCGCTGCTCGTGCTGCCCACGACGTGGTTCCGGAGCC 480 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 TCGACCTCCTGGCGTACGTCTCCCTGGGCGGCGTCCTGGCGTCCGCCATCCTCGTCGCGT 540 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 CCGTGCTCTGGGTCGGCGCCGCCGACGGCGTCGGGTTCCGCGAGGGCGGCGTGGCGGTGA 600 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 GGTGGGGTGGCGTCCCGACCGCCATGAGCCTGTACGCGTTCTGCTTCAGTGGCCATGCGG 660 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 TTTTCCCCATGATTTATACCGGCATGAGGAACAGGAGAATGTTTCCACATGTGCTGCTCA 720 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 TCTGCTTCATCATCTGCACCCTCGCCTACGGCGTGATGGGCGTCATCGGCTACCTCATGT 780 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 ACGGCGGCTCGCTCCGGTCGCAGGTGACGCTCAACCTGCCGGCGAGGAAGCTGAGCTCCA 840 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 GCATCGCCATCTACACGACGCTCATCAACCCCTTCACCAAGTTCGCCCTCCTCATCACCC 900 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 CGATCGCCGAGGCCATCGAGGGCGTCCTCGGCCTCGGCACCGCCACCACCGGCGGCAAGC 960 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 CGGCGCAGTACAGGGCCGCGGCCGTGAGCGTGTCGGTGAGGACGGCGCTGGTGGTGAGCA 1020 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 CCACGGCGGTGGCGCTCGCCGTGCCCTTCTTCGCCTACGTGGTGGCGCTCACCGGCTCGT 1080 consensus_6948#1 --------------CTCGCCGTGCCCTTCTTCGCNTACGTGGTGGCGCTCACCGGCTCCT 46 ******************** *********************** * consensus_6948#0 T-CCTCAGCGCCACCGCGA-CGATGCTGCTGCC-GTGCGCGTGCTACCTCCGGATCAGCT 1137 consensus_6948#1 TTCCTCAGCGCCACCGCGAACGATGCTGCTGCCCGTNCGCGTGCTACCTCCGGATCAGCT 106 * ***************** ************* ** *********************** consensus_6948#0 CCAGGGCCTCC-GGGAAGCTGGGGGTGCTCGAGATCGTGGCTTGCGTGGGGATCATCGTG 1196 consensus_6948#1 CCAGGNCCTCCCGGGAANCTGGGGGTGCCCGAGATCGTGGCTTGCGTGGGGATCATCGTG 166 ***** ***** ***** ********** ******************************* consensus_6948#0 CTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGC 1256 consensus_6948#1 CTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGC 226 ************************************************************ consensus_6948#0 TTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAA 1316 consensus_6948#1 TTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAA 286 ************************************************************ consensus_6948#0 TTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGT 1376 consensus_6948#1 TTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGT 346 ************************************************************ consensus_6948#0 TATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAAAAAAAAAAAA 1436 consensus_6948#1 TATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAGGAAGATGATT 406 ************************************************* ** * * consensus_6948#0 AAGA-------------------------------------------- 1440 consensus_6948#1 CTACTNGTGGAGATTGATTTTTTTTTCAAAAAAAAAAAAAAAAAAAAA 454 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||