cluster # 6950

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Oryza sativa
cluster # 6950 cluster # 6950 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6950#0 length = 773 sequences # 2

consensus_6950#1 length = 564 sequences # 2

consensusID : consensus_6950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 773
fasta sequence

                              [TGTTATTCCTCAGTCTGTGGAGTTTGGTGGCACCATGAGGAGCATGACTGATGAGGGTTTAGCATATCTAATGAAGAGGATCAAAGAGATAGTGGAAGGGCAGGCGGCGGTGAACCGGTGCGGCGGCGGCGTGGACTTCATGGAGGAGTCGATGCGGCCGTACCCGGCGGTGGTGAACGACGAGGGGATGTACGCGCACGCGCGGGCGTCGGCGGAGCGGCTGCTGGGCGCCGGCGGCGTCCGCGTGGCACCGCAGCTGATGGGCGCCGAGGACTTCGGGTTCTACGCGGCGCGGATGCCCAGCGCCTTCTTCACCATCGGCGTCGGCAACGCCACCACCAGCAGCGCCCGGGCGGCGCACACCACGCACTCCCCGCACTTCGTCATCGACGAGGCCGCACTCCCCGTCGGCGCCGCGGTCCACGCCGCCGTCGCCATCGACTACCTCTCCAAGCACGCGTCGTCCATGTGAAGAATTAAGGATCAGTGTGTGCTTGTGCATGCATGTGCGTGAGGCAAAGAAGTATCGTTTGGTGGTCATAGGTACAGTATGTGTAGAGGATACGTAGCATGCGTACACATTCTCGCCATACATAGGGCATGTGCTATATTTTAGTGCAAAAATTCTATTGTTTCTCAAAATATAGGTTAAATGAGATATAAAATACCTCGTTAAGTTTACGAAGGACCTCAATATAGAGGAGACGACAACCGCGGATTTCCAGAATACTTTTATAAGGAATGATCATTGAATGTGTATTCTTTCTAAAAAA]

[+] EMBL AK110676             [TGTTATTCCTCAGTCTGTGGAGTTTGGTGGCACCATGAGGAGCATGACTGATGAGGGTTTAGCATATCTAATGAAGAGGATCAAAGAGATAGTGGAAGGGCAGGCGGCGGTGAACCGGTGCGGCGGCGGCGTGGACTTCATGGAGGAGTCGATGCGGCCGTACCCGGCGGTGGTGAACGACGAGGGGATGTACGCGCACGCGCGGGCGTCGGCGGAGCGGCTGCTGGGCGCCGGCGGCGTCCGCGTGGCACCGCAGCTGATGGGCGCCGAGGACTTCGGGTTCTACGCGGCGCGGATGCCCAGCGCCTTCTTCACCATCGGCGTCGGCAACGCCACCACCAGCAGCGCCCGGGCGGCGCACACCACGCACTCCCCGCACTTCGTCATCGACGAGGCCGCACTCCCCGTCGGCGCCGCGGTCCACGCCGCCGTCGCCATCGACTACCTCTCCAAGCACGCGTCGTCCATGTGAAGAATTAAGGATCAGTGTGTGCTTGTGCATGCATGTGCGTGAGGCAAAGAAGTATCGTTTGGTGGTCATAGGTACAGTATGTGTAGAGGATACGTAGCATGCGTACACATTCTCGCCATACATAGGGCATGTGCTATATTTTAGTGCAAAAATTCTATTGTTTCTCAAAATATAGGTTAAATGAGATATAAAATACCTCGTTAAGTTTACGAAGGACCTCAATATAGAGGAGACGACAACCGCGGA                                                       ]
[-] EMBL CB654672             [                                                                                                                                                                                                                                                               gaTGATGGGCGCCGAGGCCTTCGGGTTTTACGCGGGGCGGATGCCCAGCGCCTTCTTCACCATCGGCGTCGGCAACGCCACCACCAGCAGCGCCCGGGCGGCGCACACCACGCACTCCCCGCACTTTGTCATCGACGAGGCCGCACTCCCCGTCGGCGCCGCGGTCCACGCCGCCGTCGCCATCGACTACCTCTCCAAGCACGCGTCGTCCATGTGAAGAATTAAGGATCAGTGTGTGCTTGTGCATGCATGTGCGTGAGGCAAAGAAGTATCGTTTGGTGGTCATAGGTACAGTATGTGTAGAGGATACGTAGCATGCGTACACATTCTCGCCATACATAGGGCATGTGCTATATTTTAGTGCAAAAATTCTATTGTTTCTCAAAATATAGGTTAAATGAGATATAAAATACCTCGTTAAGTTTACGAAGGACCTCAATATAGAGGAGACGACAACCGCGGATTTCCAGAATACTTTTATAAGGAATGATCATTGAATGTGTATTCTTTCTAAAAAA]




>consensus_6950#0
TGTTATTCCTCAGTCTGTGGAGTTTGGTGGCACCATGAGGAGCATGACTGATGAGGGTTT
AGCATATCTAATGAAGAGGATCAAAGAGATAGTGGAAGGGCAGGCGGCGGTGAACCGGTG
CGGCGGCGGCGTGGACTTCATGGAGGAGTCGATGCGGCCGTACCCGGCGGTGGTGAACGA
CGAGGGGATGTACGCGCACGCGCGGGCGTCGGCGGAGCGGCTGCTGGGCGCCGGCGGCGT
CCGCGTGGCACCGCAGCTGATGGGCGCCGAGGACTTCGGGTTCTACGCGGCGCGGATGCC
CAGCGCCTTCTTCACCATCGGCGTCGGCAACGCCACCACCAGCAGCGCCCGGGCGGCGCA
CACCACGCACTCCCCGCACTTCGTCATCGACGAGGCCGCACTCCCCGTCGGCGCCGCGGT
CCACGCCGCCGTCGCCATCGACTACCTCTCCAAGCACGCGTCGTCCATGTGAAGAATTAA
GGATCAGTGTGTGCTTGTGCATGCATGTGCGTGAGGCAAAGAAGTATCGTTTGGTGGTCA
TAGGTACAGTATGTGTAGAGGATACGTAGCATGCGTACACATTCTCGCCATACATAGGGC
ATGTGCTATATTTTAGTGCAAAAATTCTATTGTTTCTCAAAATATAGGTTAAATGAGATA
TAAAATACCTCGTTAAGTTTACGAAGGACCTCAATATAGAGGAGACGACAACCGCGGATT
TCCAGAATACTTTTATAAGGAATGATCATTGAATGTGTATTCTTTCTAAAAAA

consensusID : consensus_6950#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 564
fasta sequence

                              [GGCNTGGACTTCATGGAGGAGTCGATGCGGCCGTACCCGGCGGTGGTGAACGACGAGGGGATGTACCGCACGCGCGGGCGTCGGCGGAGCGGCTGCTGGGCGCCGGCGGCGTCCGCGTGGCACCGCAGCTGATGGGCGCCGAGGACTTCGGGTTCT-ACGCGGCGCGGATGCCCAGCGCCTTCTTCACCATCGGCGTCGGCAACGCCACCACCCAGCAGCGCCCGGGCGGCGCACACCACGCACTCCCCGCACTTCGTCATCGACGAGGCCGCACTCCCCGTCGGCGCCGCGGTCCACGCCGCCGTCGCCATCGACTACCTCTCCAAGCACGCGTCGTCCATGTGAAGAATTAAGGATCAGTGTGTGCTTGTGCATGCATGTGCGTGAGGCAAAGAAGTATCGTTTGGTGGTCATAGGTACAGTATGTGTAGAGGATACGTAGCATGCGTACACATTCTCGCCATACATAGGGCATGTGCTATATTTTAGTGCAAAAATTCTATTGTTTCTCAAAATATAGGTTAAATGAGATATAAAATACCTCGTTAAGTTTAAAAAAAAAAA]

[+] EMBL AU057861             [GGCNTGGACTTCATGGAGGAGTCGATGCGGCCGTACCCGGCGGTGGTGAACGACGAGGGGATGTACCGCACGCGCGGGCGTCGGCGGAGCGGCTGCTGGGCGCCGGCGGCGTCCGCGTGGCACCGCAGCTGATGGGCGCCGAGGACTTCGGGTTCT ACGCGGCGCGGATGCCCAGCGCCTTCTTCACCATCGGCGTCGGCAACGCCACCACCCAGCAGCGCCCGGGCGGCGCACACCACGCACTCCCCGCACTTCGTCATCGACGAGGCCGCACTCCCCGTCGGCGCCGCGGTCCACGCCGCCGTCGCCATCGACTACCTCTCCAAGCACGCGTCGTCCATGTGAAGAATTAAGGATCAGTGTGTGCTTGTGCATGCATGTGCGTGAGGCAAAGAAGTATCGTTTGGTGGTCATAGGTACAGTATGTGTAGAGGATACGTAGCATGCGTACACATTCTCGCCATACATAGGGCATGTGCTATATTTTAGTGCAAAAATTCTATTGTTTCTCAAAATATAGGTTAAATGAGATATAAAATACCTCGTTAAGTTTAAAAAAAAAAA]
[+] EMBL AU056703             [                                                                                                         GCGGCGTCCGCGTGGCACCGCAGCTGATGGGCGCCGAGGACTTCGGGTTCTAACGCGGCGCGGATGCCCAGCGCCTTCTTCACCATCGGCGTCGGCAACGCCACCA CCAGCAGCGCCCGGGCGGCGCACACCACGCACTCCCCGCACTTCGTCATCGACGAGGCCGCACTCCCCGTCGGCGCCGCGGTCCACGCCGCCGTCGCCATCGACTACCTCTCCAAGCACGCGTCGTCCATGTGAAGAATTAAGGATCAGTGTGTGCTTGTGCATGCATGTGCGTGAGGCAAAGAAGTATCGTTTGGTGGTCATAGGTACAGTATGTGTAGAGGATACGTAGCATGCGTACACATTCTCGCCATACATAGGGCATGTGCTATATTTTAGTGCAAAAATTCTATTGTTTCTCAAAATATAGGTTAAATGAGATATAAAATACCTCGTTAAGTTTAAAAAAAA   ]




>consensus_6950#1
GGCNTGGACTTCATGGAGGAGTCGATGCGGCCGTACCCGGCGGTGGTGAACGACGAGGGG
ATGTACCGCACGCGCGGGCGTCGGCGGAGCGGCTGCTGGGCGCCGGCGGCGTCCGCGTGG
CACCGCAGCTGATGGGCGCCGAGGACTTCGGGTTCTACGCGGCGCGGATGCCCAGCGCCT
TCTTCACCATCGGCGTCGGCAACGCCACCACCCAGCAGCGCCCGGGCGGCGCACACCACG
CACTCCCCGCACTTCGTCATCGACGAGGCCGCACTCCCCGTCGGCGCCGCGGTCCACGCC
GCCGTCGCCATCGACTACCTCTCCAAGCACGCGTCGTCCATGTGAAGAATTAAGGATCAG
TGTGTGCTTGTGCATGCATGTGCGTGAGGCAAAGAAGTATCGTTTGGTGGTCATAGGTAC
AGTATGTGTAGAGGATACGTAGCATGCGTACACATTCTCGCCATACATAGGGCATGTGCT
ATATTTTAGTGCAAAAATTCTATTGTTTCTCAAAATATAGGTTAAATGAGATATAAAATA
CCTCGTTAAGTTTAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6950#0      TGTTATTCCTCAGTCTGTGGAGTTTGGTGGCACCATGAGGAGCATGACTGATGAGGGTTT 60
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      AGCATATCTAATGAAGAGGATCAAAGAGATAGTGGAAGGGCAGGCGGCGGTGAACCGGTG 120
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      CGGCGGCGGCGTGGACTTCATGGAGGAGTCGATGCGGCCGTACCCGGCGGTGGTGAACGA 180
consensus_6950#1      -------GGCNTGGACTTCATGGAGGAGTCGATGCGGCCGTACCCGGCGGTGGTGAACGA 53
                             *** *************************************************

consensus_6950#0      CGAGGGGATGTACGCGCACGCGCGGGCGTCGGCGGAGCGGCTGCTGGGCGCCGGCGGCGT 240
consensus_6950#1      CGAGGGGATGTAC-CGCACGCGCGGGCGTCGGCGGAGCGGCTGCTGGGCGCCGGCGGCGT 112
                      ************* **********************************************

consensus_6950#0      CCGCGTGGCACCGCAGCTGATGGGCGCCGAGGACTTCGGGTTCTACGCGGCGCGGATGCC 300
consensus_6950#1      CCGCGTGGCACCGCAGCTGATGGGCGCCGAGGACTTCGGGTTCTACGCGGCGCGGATGCC 172
                      ************************************************************

consensus_6950#0      CAGCGCCTTCTTCACCATCGGCGTCGGCAACGCCACCACC-AGCAGCGCCCGGGCGGCGC 359
consensus_6950#1      CAGCGCCTTCTTCACCATCGGCGTCGGCAACGCCACCACCCAGCAGCGCCCGGGCGGCGC 232
                      **************************************** *******************

consensus_6950#0      ACACCACGCACTCCCCGCACTTCGTCATCGACGAGGCCGCACTCCCCGTCGGCGCCGCGG 419
consensus_6950#1      ACACCACGCACTCCCCGCACTTCGTCATCGACGAGGCCGCACTCCCCGTCGGCGCCGCGG 292
                      ************************************************************

consensus_6950#0      TCCACGCCGCCGTCGCCATCGACTACCTCTCCAAGCACGCGTCGTCCATGTGAAGAATTA 479
consensus_6950#1      TCCACGCCGCCGTCGCCATCGACTACCTCTCCAAGCACGCGTCGTCCATGTGAAGAATTA 352
                      ************************************************************

consensus_6950#0      AGGATCAGTGTGTGCTTGTGCATGCATGTGCGTGAGGCAAAGAAGTATCGTTTGGTGGTC 539
consensus_6950#1      AGGATCAGTGTGTGCTTGTGCATGCATGTGCGTGAGGCAAAGAAGTATCGTTTGGTGGTC 412
                      ************************************************************

consensus_6950#0      ATAGGTACAGTATGTGTAGAGGATACGTAGCATGCGTACACATTCTCGCCATACATAGGG 599
consensus_6950#1      ATAGGTACAGTATGTGTAGAGGATACGTAGCATGCGTACACATTCTCGCCATACATAGGG 472
                      ************************************************************

consensus_6950#0      CATGTGCTATATTTTAGTGCAAAAATTCTATTGTTTCTCAAAATATAGGTTAAATGAGAT 659
consensus_6950#1      CATGTGCTATATTTTAGTGCAAAAATTCTATTGTTTCTCAAAATATAGGTTAAATGAGAT 532
                      ************************************************************

consensus_6950#0      ATAAAATACCTCGTTAAGTTTACGAAGGACCTCAATATAGAGGAGACGACAACCGCGGAT 719
consensus_6950#1      ATAAAATACCTCGTTAAGTTTAAAAAAAAAAA---------------------------- 564
                      **********************  **  *                               

consensus_6950#0      TTCCAGAATACTTTTATAAGGAATGATCATTGAATGTGTATTCTTTCTAAAAAA 773
consensus_6950#1      ------------------------------------------------------