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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1691 fasta sequence
[CTCGCCTCGCGTCCCCGCGATTTCTCACTCGCCATCGCCGACGAGATCCTCGCCACCGCGCCGCCCCCACCCCCCTCATGGCGGCCGCGCGGCGGGTGGCGGGCGGCGGCGGTGGCAGCCTGTGGGGCCCGCCTCAGCCGCCGCCGTCGACCGGAGGGGGCATCCCCCAGCTCCCCGCCGCGGCCGCCGCCCCAGTGGAGGGCCTCCTCGACGCCCCCTTCTCTTCCTCCTCCGGTGGCGGTGGCGGCGGCTGGCCGCCGCCGCCGCCGCCGCTCTCCGGCACCGCCGTCCTCATCGGGTACCCCCAGGGCAACTTTGAAACTTTCCCTCAACAGGACTTGGTACCTTTAACAGCACAAGAGGTTCATTCTAAGTGCATTACATTCGGTCGAGCAGAGAACCTGCCTTTTATCCCTTTGGCGACTTCAGCGCTGGTCTCCCAACATACTGGTTCTTCTTCTGTAAATGTGACACCGTTGCAAGAAATTCTGACTTCGCCGTCGCAAATAAGCAATGTCAACACTGAATCTATTGGGGTGTTACAAGGGCTCCCAGCTTCATCCATCGTTCTGGATAGACCTACTGATGATGGATACAACTGGCGAAAGTATGGTCAGAAGGCAGTGAAGGGTGGGGAATATCCAAAGAGCTACTACAAATGCACCCATCTGAACTGTTTGGTCAGGAAAAATGTGGAGCACTCTGCAGATGGACGAATCGTTCAGATAATTTACAGAGGACAACACACTCATGAACGGCCCTCAAAAAGGAGGTTTAAAGATTGTGGTGGTATATCAGATGATTTAGACGATTTCAGTGGCACCACGGGCACTTCAGTCAGATCACAGCCTGATTACGATGATTACTGCAGAAAGCCTATCATTCCAAGTGGCACCATGGTTGCTCCTTTAGTGAAAAAGATTGAAGATGGTGATGACCAATTGTCTGGATCAAGTGATAACCAGGATGAGCATGATGATGAGGTGAGGACTTCTGATGGAGCTTCCGGTGATGCCAGTGCAAATGAAAGGAATGTGCCAGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGATCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAGTTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCCATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGAACACAAAGTCGAATACCTACTGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTCTGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGCCGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAGCATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTTCAATGGGATATGCAGAAGTTGTGATTTCTGAACCTGATGGAGCTTCACTCTTGGTCAGACCTTTTAATGTGTGATGCTGTTGTACTAGTACATATCAACATGATTGATTTTCAGTAAAGCAAAAAAAAAAA]
[+] EMBL AY341847 [CTCGCCTCGCGTCCCCGCGATTTCTCACTCGCCATCGCCGACGAGATCCTCGCCACCGCGCCGCCCCCACCCCCCTCATGGCGGCCGCGCGGCGGGTGGCGGGCGGCGGCGGTGGCAGCCTGTGGGGCCCGCCTCAGCCGCCGCCGTCGACCGGAGGGGGCATCCCCCAGCTCCCCGCCGCGGCCGCCGCCCCAGTGGAGGGCCTCCTCGACGCCCCCTTCTCTTCCTCCTCCGGTGGCGGTGGCGGCGGCTGGCCGCCGCCGCCGCCGCCGCTCTCCGGCACCGCCGTCCTCATCGGGTACCCCCAGGGCAACTTTGAAACTTTCCCTCAACAGGACTTGGTACCTTTAACAGCACAAGAGGTTCATTCTAAGTGCATTACATTCGGTCGAGCAGAGAACCTGCCTTTTATCCCTTTGGCGACTTCAGCGCTGGTCTCCCAACATACTGGTTCTTCTTCTGTAAATGTGACACCGTTGCAAGAAATTCTGACTTCGCCGTCGCAAATAAGCAATGTCAACACTGAATCTATTGGGGTGTTACAAGGGCTCCCAGCTTCATCCATCGTTCTGGATAGACCTACTGATGATGGATACAACTGGCGAAAGTATGGTCAGAAGGCAGTGAAGGGTGGGGAATATCCAAAGAGCTACTACAAATGCACCCATCTGAACTGTTTGGTCAGGAAAAATGTGGAGCACTCTGCAGATGGACGAATCGTTCAGATAATTTACAGAGGACAACACACTCATGAACGGCCCTCAAAAAGGAGGTTTAAAGATTGTGGTGGTATATCAGATGATTTAGACGATTTCAGTGGCACCACGGGCACTTCAGTCAGATCACAGCCTGATTACGATGATTACTGCAGAAAGCCTATCATTCCAAGTGGCACCATGGTTGCTCCTTTAGTGAAAAAGATTGAAGATGGTGATGACCAATTGTCTGGATCAAGTGATAACCAGGATGAGCATGATGATGAGGTGAGGACTTCTGATGGAGCTTCCGGTGATGCCAGTGCAAATGAAAGGAATGTGCCAGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGATCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAGTTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCCATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGAACACAAAGTCGAATACCTACTGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTCTGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGCCGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCC ]
[-] EMBL CA759399 [ AAGGAATGTGCCAGCCCCAGGTCAAAAGATNATAGTGAGTACAACCAGTGAGATCGATCTTTTGGATGATGGTNATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAGTTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCCATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGAACACAAAGTCGAATACCTACGGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTCTGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGCCGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAGCATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTTCAATGGGATATGCAGAAGTTGTGATTTCTGAACCTGATGGAGCTTCACTCTTGGTCAGACCTTTTAATGTGTGATGCTGTTGTACTAGTACATATCAACATGATTGATTTTCAGTAAAGCAAAAAAAAAAA]
consensusID : consensus_6969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[TGCCGTCTGGGGCGCCGCAGCCGGGCGCCGGCAGATCGACCCCCGCCGGCGGGCGCCGCGGCGACGGCCTGCGCGCGCCGCGCGANCTGACACGCNTGNNNCNGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGATCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAGTTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCCATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGAACACAAAGTCGAATACCTACGGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTCTGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGCCGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAGCATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTTCGATGGGATATGCAGAAGTTGTGATTTCTGAACCAAAAAAAAAAAAA]
[-] EMBL CA759398 [TGCCGTCTGGGGCGCCGCAGCCGGGCGCCGGCAGATCGACCCCCGCCGGCGGGCGCCGCGGCGACGGCCTGCGCGCGCCGCGCGANCTGACACGCNTGNNNCNGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGATCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAGTTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCCATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGAACACAAAGTCGAATACCTACGGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTCTGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGCCGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAGCATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTTCGATGGGATATGCAGAAGTTGTGATTTCTGAACCAAAAAAAAAAAAA]
consensusID : consensus_6969#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence
[AGTGAGATCGATCTTTTGGATGATGGTTATNGGTGGNGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAAGCTGTGATGTGCCTGCTGCNAGGAACNAAAACCNTGTCNTNACCAATGCCTCTCNGNTGCNNAACNCNAANTCGAATACCTACAGNNCAGANCAATCCTNCACCACGATCACGTGCTANATTCTGCCNTACANCCGTCTGATTGCTCNTGTGTTNCNTTTCTGAANCTGTGTNTTTTATCNGCCGTGCCACTAACCAAGCGATTTTTGGCACCNNTGTGCCNTGTATTTTTCCNNCNGCAAGCATNCCTTCTCCTATTTGGGAANGNCCNAATTGTNATATTGATTTCTGCNNCTGCTATTTCCATGGGATATGCNGAAATTGTNATTT]
[+] EMBL BE228959 [AGTGAGATCGATCTTTTGGATGATGGTTATNGGTGGNGAAAATATGGACAGAAAGTGGTGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAAGCTGTGATGTGCCTGCTGCNAGGAACNAAAACCNTGTCNTNACCAATGCCTCTCNGNTGCNNAACNCNAANTCGAATACCTACAGNNCAGANCAATCCTNCACCACGATCACGTGCTANATTCTGCCNTACANCCGTCTGATTGCTCNTGTGTTNCNTTTCTGAANCTGTGTNTTTTATCNGCCGTGCCACTAACCAAGCGATTTTTGGCACCNNTGTGCCNTGTATTTTTCCNNCNGCAAGCATNCCTTCTCCTATTTGGGAANGNCCNAATTGTNATATTGATTTCTGCNNCTGCTATTTCCATGGGATATGCNGAAATTGTNATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 CTCGCCTCGCGTCCCCGCGATTTCTCACTCGCCATCGCCGACGAGATCCTCGCCACCGCG 60
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 CCGCCCCCACCCCCCTCATGGCGGCCGCGCGGCGGGTGGCGGGCGGCGGCGGTGGCAGCC 120
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 TGTGGGGCCCGCCTCAGCCGCCGCCGTCGACCGGAGGGGGCATCCCCCAGCTCCCCGCCG 180
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 CGGCCGCCGCCCCAGTGGAGGGCCTCCTCGACGCCCCCTTCTCTTCCTCCTCCGGTGGCG 240
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 GTGGCGGCGGCTGGCCGCCGCCGCCGCCGCCGCTCTCCGGCACCGCCGTCCTCATCGGGT 300
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 ACCCCCAGGGCAACTTTGAAACTTTCCCTCAACAGGACTTGGTACCTTTAACAGCACAAG 360
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 AGGTTCATTCTAAGTGCATTACATTCGGTCGAGCAGAGAACCTGCCTTTTATCCCTTTGG 420
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 CGACTTCAGCGCTGGTCTCCCAACATACTGGTTCTTCTTCTGTAAATGTGACACCGTTGC 480
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 AAGAAATTCTGACTTCGCCGTCGCAAATAAGCAATGTCAACACTGAATCTATTGGGGTGT 540
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 TACAAGGGCTCCCAGCTTCATCCATCGTTCTGGATAGACCTACTGATGATGGATACAACT 600
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 GGCGAAAGTATGGTCAGAAGGCAGTGAAGGGTGGGGAATATCCAAAGAGCTACTACAAAT 660
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 GCACCCATCTGAACTGTTTGGTCAGGAAAAATGTGGAGCACTCTGCAGATGGACGAATCG 720
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 TTCAGATAATTTACAGAGGACAACACACTCATGAACGGCCCTCAAAAAGGAGGTTTAAAG 780
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 ATTGTGGTGGTATATCAGATGATTTAGACGATTTCAGTGGCACCACGGGCACTTCAGTCA 840
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 GATCACAGCCTGATTACGATGATTACTGCAGAAAGCCTATCATTCCAAGTGGCACCATGG 900
consensus_6969#1 -----------------------------------TGCCGTCTGGGGCGCCGCAGCCGGG 25
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 TTGCTCCTTTAGTGAAAAAGATTGAAGATGGTGATGACCAATTGTCTGGATCAAGTGATA 960
consensus_6969#1 CGCCGGCAGATCGACCCCCGCCGGCGGGCGCCGCGGCGACGGCCTGCGC--GCGCCGCGC 83
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 ACCAGGATGAGCATGATGATGAGGTGAGGACTTCTGATGGAGCTTCCGGTGATGCCAGTG 1020
consensus_6969#1 GANCTGACACGCNTGNNNCNGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGA 143
consensus_6969#2 -----------------------------------------------------AGTGAGA 7
consensus_6969#0 CAAATGAAAGGAATGTGCCAGCCCCAGGTCAAAAGATTATAGTGAGTACAACCAGTGAGA 1080
*******
consensus_6969#1 TCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAA 203
consensus_6969#2 TCGATCTTTTGGATGATGGTTATNGGTGGNGAAAATATGGACAGAAAGTGGTGAAAGGAA 67
consensus_6969#0 TCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGGTGAAAGGAA 1140
*********************** ***** ******************************
consensus_6969#1 ATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAG 263
consensus_6969#2 ATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAAGCTGTGATGT----------- 116
consensus_6969#0 ATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAG 1200
************************************** **********
consensus_6969#1 TTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCC 323
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 TTGAGAGATCTGTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCC 1260
consensus_6969#1 ATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGA 383
consensus_6969#2 -------GCCTGCTGCNAGGAACNAAAACCNTGTCNTNACCAATGCCTCTCNGNTGCNNA 169
consensus_6969#0 ATGATGTGCCTGCTGCAAGGAACAAAAGCCATGTCGTAGCCAATGCCTCTCTATTGCAGA 1320
********* ****** *** ** **** * ************ *** *
consensus_6969#1 ACACAAAGTCGAATACCTACGGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTC 443
consensus_6969#2 ACNCNAANTCGAATACCTACAGNNCAGANCAATCCTNCACCACGATCACGTGCTANATTC 229
consensus_6969#0 ACACAAAGTCGAATACCTACTGCACAGAGCAATCCTACACAACGATCACTTGCTAGATTC 1380
** * ** ************ * **** ******* *** ******** ***** ****
consensus_6969#1 TGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGC 503
consensus_6969#2 TGCCNTACANCCGTCTGATTGCTCNTGTGTTNCNTTTCTGAANCTGTGTNTTTTATCNGC 289
consensus_6969#0 TGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGC 1440
**** **** ************** * *** * ******** ****** ******* **
consensus_6969#1 CGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAG 563
consensus_6969#2 CGTGCC-ACTAACCAAGCGATTTTTGGCACCNNTGTGCCNTGTATTTTTCCNNCNGCAAG 348
consensus_6969#0 CGTACCCACTAACGAGGCGATTTTTGGCACCATTGTGCCATGTATTTTTCCTGCTGCAAG 1500
*** ** ****** * *************** ****** *********** * *****
consensus_6969#1 CATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTT 623
consensus_6969#2 CATNCCTTCTCCTATTTGGGAANGNCCNAATTGTNATATTGATTTCTGCNNCTGCTATTT 408
consensus_6969#0 CATACGTTTTCCTATTTGGGAACATCCGAATTGTAATATTGATTTCTGCAAGTGCTATTT 1560
*** * ** ************* ** ****** ************** ********
consensus_6969#1 CGATGGGATATGCAGAAGTTGTGATTTCTGAACCAAAAAAAAAAAAA------------- 670
consensus_6969#2 CCATGGGATATGCNGAAATTGTNATTT--------------------------------- 435
consensus_6969#0 CAATGGGATATGCAGAAGTTGTGATTTCTGAACCTGATGGAGCTTCACTCTTGGTCAGAC 1620
* *********** *** **** ****
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 CTTTTAATGTGTGATGCTGTTGTACTAGTACATATCAACATGATTGATTTTCAGTAAAGC 1680
consensus_6969#1 -----------
consensus_6969#2 -----------
consensus_6969#0 AAAAAAAAAAA 1691
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||