cluster # 6972

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Oryza sativa
cluster # 6972 cluster # 6972 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6972#0 length = 363 sequences # 3

consensus_6972#1 length = 255 sequences # 1

consensusID : consensus_6972#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 363
fasta sequence

                              [CATCATAAAGCAGCTGCTCGGCCATGGCACCACCGCCTGCGGTGCTCAGCTCCGGTGAGCTCGGNGCGCGAGGGCACACACGGCCGCACGTCGTGTTCGTCCCGAGCGCCGGCATGGGCCACCTCCTCCAGTTCTTCCGCTTCATCGGCGCGCTGTCCGCCCACGACGTCGACATCTCCGTNGTCACCGTCTTCCCGACCGTNTCCGCCGCCGAGGCCGACCACTTCGCCGCCCTCTTAAGGGACTATCCCAGCGTCCGCCGCCTCGACTTCGACCTGCTGCCGTTCGACGCGTCCGAGTTNCCCGGCGGCGACCCGTTCCTGCTTCGGTGGGAGGCCCTGCGNCGTTCCTTGNAACTCCTGG]

[+] EMBL OSS12632A            [CATCATAAAGCAGCTGCTCGGCCATGGCACCACCGCCTGCGGTGCTCAGCTCCGGTGAGCTCGGNGCGCGAGGGCACACACGGCCGCACGTCGTGTTCGTCCCGAGCGCCGGCATGGGCCACCTCCTCCAGTTCTTCCGCTTCATCGGCGCGCTGTCCGCCCACGACGTCGACATCTCCGTNGTCACCGTNTTCCCGACCGTTTCCGCCGCCGAGGCCGACCACTTCGCCGCCCTCTTAAGGNACTATCCNAGCGTCCGCNGCCTCGACTTNGACCTGCTGCCGTTCGACGCGTCCGAGTTNCCCGGCGGCGACCCGTTCCTGCTNCGGTGGGAGGCCCTGCGNCGTTCCTTGNAACTCCTGG]
[+] EMBL OSS13419A            [CATCATAAAGCAGCTGCTCGGCCATGGCACCACCGCCTGCGGTGCTCAGCTCCGGTGAGCTCGGCGCGCGAGGGCACACACGGCCGCACGTNGTGTTCGTCCCGAGCGCCGGCATGGGCCACCTCCTCCAGTTCTTCCGCTTCATCGGCGCGCTGTCCGCCCACGACGTCGACATCTCCGTNGTCACCGTCTTCCCGACCGTNTCCGCCGCCGAGGCCGACCACTTCGCCGCCCTCTTCAGGGACTATCCCAGCGTCCGCCGCCTCGACTTCGACCTGCTGCCGTTCGACGCGTCCGAGTTCCCCGGCGGCGACCCGTTCCTGCTTCGGTGGGAGGCCCTGCGNCGNTCCTTG AACTCC   ]
[+] EMBL OSS12626A            [CATCATAAAGCAGCTGCTCGGCCATGGCACCACCGCCTGCGGTGCTCAGCTCCGGTGAGCTCGGNGCGCGAGGGCACACACGGCCGCACGTCGTGTTCGTCCCGAGCGCCGGCATGGGCCACCTCCTCCAGTTCTTCCGCTTCATCGGCGCGCTGTCCGCCCACGACGTCGACATCTCCGTNGTCACCGTCTTCCCGACCGTNTCCGCCGCCGAGGCCGACCACTTCGCCGCCCTCTTAAGGGACTATCCCAGCGTCCGCCGCCTCGACTTCGACCTGCTGCCGTTCGACGNGTCCGAGTTTCCCGGCGGCGANCCGTTCCTGCTTCGGTGGGAGGC                          ]




>consensus_6972#0
CATCATAAAGCAGCTGCTCGGCCATGGCACCACCGCCTGCGGTGCTCAGCTCCGGTGAGC
TCGGNGCGCGAGGGCACACACGGCCGCACGTCGTGTTCGTCCCGAGCGCCGGCATGGGCC
ACCTCCTCCAGTTCTTCCGCTTCATCGGCGCGCTGTCCGCCCACGACGTCGACATCTCCG
TNGTCACCGTCTTCCCGACCGTNTCCGCCGCCGAGGCCGACCACTTCGCCGCCCTCTTAA
GGGACTATCCCAGCGTCCGCCGCCTCGACTTCGACCTGCTGCCGTTCGACGCGTCCGAGT
TNCCCGGCGGCGACCCGTTCCTGCTTCGGTGGGAGGCCCTGCGNCGTTCCTTGNAACTCC
TGG

consensusID : consensus_6972#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [CATCATAAAGCAGCTGCTCGGNCATGGCACCACCGNCTGCGGTGCTCAGCTCCGGTGAGCTCGGCGCGCGAGGGCACACACGGCCGCACGTNGTGTTCGTCCCGAGCGCNGCATGGGNCACCTCCTCCAGTNCTTCCGCTTCATCGGCGCGNTGTNCGCCACGATGTCGACATCTCCGTTGTACCGTCTTCCGCCGTGTCNGCGCGAGGCGACCACTTCGCGNCTCTTCAGGGCTATCCAGTGTCGNGCTCGCTT]

[+] EMBL OSS13305A            [CATCATAAAGCAGCTGCTCGGNCATGGCACCACCGNCTGCGGTGCTCAGCTCCGGTGAGCTCGGCGCGCGAGGGCACACACGGCCGCACGTNGTGTTCGTCCCGAGCGCNGCATGGGNCACCTCCTCCAGTNCTTCCGCTTCATCGGCGCGNTGTNCGCCACGATGTCGACATCTCCGTTGTACCGTCTTCCGCCGTGTCNGCGCGAGGCGACCACTTCGCGNCTCTTCAGGGCTATCCAGTGTCGNGCTCGCTT]




>consensus_6972#1
CATCATAAAGCAGCTGCTCGGNCATGGCACCACCGNCTGCGGTGCTCAGCTCCGGTGAGC
TCGGCGCGCGAGGGCACACACGGCCGCACGTNGTGTTCGTCCCGAGCGCNGCATGGGNCA
CCTCCTCCAGTNCTTCCGCTTCATCGGCGCGNTGTNCGCCACGATGTCGACATCTCCGTT
GTACCGTCTTCCGCCGTGTCNGCGCGAGGCGACCACTTCGCGNCTCTTCAGGGCTATCCA
GTGTCGNGCTCGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6972#0      CATCATAAAGCAGCTGCTCGGCCATGGCACCACCGCCTGCGGTGCTCAGCTCCGGTGAGC 60
consensus_6972#1      CATCATAAAGCAGCTGCTCGGNCATGGCACCACCGNCTGCGGTGCTCAGCTCCGGTGAGC 60
                      ********************* ************* ************************

consensus_6972#0      TCGGNGCGCGAGGGCACACACGGCCGCACGTCGTGTTCGTCCCGAGCGCCGGCATGGGCC 120
consensus_6972#1      TCGGCGCGCGAGGGCACACACGGCCGCACGTNGTGTTCGTCCCGAGCGCNG-CATGGGNC 119
                      **** ************************** ***************** * ****** *

consensus_6972#0      ACCTCCTCCAGTTCTTCCGCTTCATCGGCGCGCTGTCCGCCCACGACGTCGACATCTCCG 180
consensus_6972#1      ACCTCCTCCAGTNCTTCCGCTTCATCGGCGCGNTGTNCGCC-ACGATGTCGACATCTCCG 178
                      ************ ******************* *** **** **** *************

consensus_6972#0      TNGTCACCGTCTTCCCGACCGTNTCCGCCGCCGAGGCCGACCACTTCGCCGCCCTCTTAA 240
consensus_6972#1      TTGT-ACCGTCTTCC--GCCGTGTCNGCG--CGAGGC-GACCACTTCGCGNCTCTTC--- 229
                      * ** **********   **** ** **   ****** ***********  * **     

consensus_6972#0      GGGACTATCCCAGCGTC-CGCCGCCTCGACTTCGACCTGCTGCCGTTCGACGCGTCCGAG 299
consensus_6972#1      AGGGCTATCC-AGTGTCGNGCTCGCTT--------------------------------- 255
                       ** ****** ** ***  **   **                                  

consensus_6972#0      TTNCCCGGCGGCGACCCGTTCCTGCTTCGGTGGGAGGCCCTGCGNCGTTCCTTGNAACTC 359
consensus_6972#1      ------------------------------------------------------------
                                                                                  

consensus_6972#0      CTGG 363
consensus_6972#1      ----