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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1761 fasta sequence
[CTCCCTTCTCTCTCTTCCCTCTCAACTCCTCTCTCTCTCTCCTTCGTCGTCTCCTCCTCCCCCTCTGCTCCTCCCCCTCGTGGCGCCTCCGGCTTGCCGCGCGCGCCCGCCCGCCCGCCCGCGCCCACCGGCGCGAGCCGAGGGTACACGAGGAGTTCGGCCTTTCCGGTTTCCGGTTGTGTTGTGAGGAGTGGCGGCGGCGGCGGCGAGGCGGCGACGAGGCGACGCCATTGCGGGGTGTGGCGCACACCACACCCCCCTCATCGCCGCTGGACCGGCATCTCTGCGTGTGATTGTGTCCGAGAAGAAAGAGGAAGTCGTCGTGCGTGCGTCCCCTCGGCGTCGACTGCTGTATTGATGCGATGGAGCAGCGTGAGGATCATACCAAATCATCAGAACCTGCATTCATTCCATCCAAAAGGACTCATCAGATGAGAAACATATGGGCATGGGGAGGTCCTTCTTCAACTACAGTCAACGGATCAAGTGACGCGGTCTTGTTCTCCAGCTCGTTGCCATCAGTTCTGCAATTTGGAAAACTGCCAGGTAAAGAAAGGGAGTACAATGCTCAACCAAAGGATGATATGTTTCCCATGATGAAGCAGCCAGGCACTAATGCTAGAGTGGCTGACCCCATGGATGATGTAGCACAGCATTTGATTGGAAATCTGTTACCAGATGATGAAGAGCTATTGGCTGGGGTAATTGAAGATTTTGATCATGTTAAACTGAGAACCCAAGTTGAGGAATCAGAAGAATATGATGTTTTCCGCAATAGTGGGGGTATGGAGCTGGATATTGACCCTCTGGAAAGCATCACCTTTGGTACAGCAAAGGCTAGCCTTGTCAATGGTACTGGAAGTAGCACTAATCAGTACAGCATCCAAAATGGTGCTGGAACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGTCCAGGACATTGTTCGTTCGGAACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGTTTGAGCCATTTGGGGATATTCGGTCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATATCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAACTTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAACCCTGGTGATCTTTAATTGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTGGTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAGCGACACCATAGATTTATTGAGTTCTATGATGTTAGGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACATTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTATACAGCATTTTAATCACGAATTTGAGCAAGACGAAACAAAGCATAATTCATTTCAGATTGGTTCACCTTCTGCCAACTCTCCACCAAGTTTGTGGTCCCAACTTGGCAGCCCAACAGATGAAAATAAATTAAATGCACTCAATGAAACTGCATTTAATGGGGGAATGAGCCCTTTGGGCAGTAACCATCTTTCTGGGTTCTCTTCAGGATATCCTCCCATGAAATCACCCGTTGGGAAGAGCTCCTATTGGAATAACCGTGCTGACAACATATTCCATGGGTCACCAACTTTGCACAATTCACATTCGTTTCCAGAACATCATGG]
[+] EMBL AK068695 [CTCCCTTCTCTCTCTTCCCTCTCAACTCCTCTCTCTCTCTCCTTCGTCGTCTCCTCCTCCCCCTCTGCTCCTCCCCCTCGTGGCGCCTCCGGCTTGCCGCGCGCGCCCGCCCGCCCGCCCGCGCCCACCGGCGCGAGCCGAGGGTACACGAGGAGTTCGGCCTTTCCGGTTTCCGGTTGTGTTGTGAGGAGTGGCGGCGGCGGCGGCGAGGCGGCGACGAGGCGACGCCATTGCGGGGTGTGGCGCACACCACACCCCCCTCATCGCCGCTGGACCGGCATCTCTGCGTGTGATTGTGTCCGAGAAGAAAGAGGAAGTCGTCGTGCGTGCGTCCCCTCGGCGTCGACTGCTGTATTGATGCGATGGAGCAGCGTGAGGATCATACCAAATCATCAGAACCTGCATTCATTCCATCCAAAAGGACTCATCAGATGAGAAACATATGGGCATGGGGAGGTCCTTCTTCAACTACAGTCAACGGATCAAGTGACGCGGTCTTGTTCTCCAGCTCGTTGCCATCAGTTCTGCAATTTGGAAAACTGCCAGGTAAAGAAAGGGAGTACAATGCTCAACCAAAGGATGATATGTTTCCCATGATGAAGCAGCCAGGCACTAATGCTAGAGTGGCTGACCCCATGGATGATGTAGCACAGCATTTGATTGGAAATCTGTTACCAGATGATGAAGAGCTATTGGCTGGGGTAATTGAAGATTTTGATCATGTTAAACTGAGAACCCAAGTTGAGGAATCAGAAGAATATGATGTTTTCCGCAATAGTGGGGGTATGGAGCTGGATATTGACCCTCTGGAAAGCATCACCTTTGGTACAGCAAAGGCTAGCCTTGTCAATGGTACTGGAAGTAGCACTAATCAGTACAGCATCCAAAATGGTGCTGGAACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGTCCAGGACATTGTTCGTTCGGAACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGTTTGAGCCATTTGGGGATATTCGGTCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATATCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAACTTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAACCCTGGTGATCTTTAATTGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTGGTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAGCGACACCATAGATTTATTGAGTTCTATGATGTTAGGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACATTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTATACAGCATTTTAATCACGAATTTGAGCAAGACGAAACAAAGCATAATTCATTTCAGATTGGTTCACCTTCTGCCAACTCTCCACCAAGTTTGTGGTCCCAACTTGGCAGCCCAACAGATGAAAATAAATTAAATGCACTCAATGAAACTGCATTTAATGGGGGAATGAGCCCTTTGGGCAGTAACCATCTTTCTGGGTTCTCTTCAGGATATCCTCCCATGAAATCACCCGTTGGGAAGAGCTCCTATTGGAATAACCGTGCTGACAACATATTCCATGGGTCACCAACTTTGCACAATTCACATTCGTTTCCAG ]
[+] EMBL CB636073 [ CCCTCTCAACTCCTCTCTCTCTCTCCTTCGTCGTCTCCTCCTCCCCCTCTGCTCCTCCCCCTCGTGGCGCCTCCGGCTTGCCGCGCGCGCCCGCCCGCCCGCCCGCGCCCACCGGCGCGAGCCGAGGGTACACGAGGAGTTCGGCCTTTCCGGTTTCCGGTTGTGTTGTGAGGAGTGGCGGCGGCGGCGGCGAGGCGGCGACGAGGCGACGCC ]
[+] EMBL CB642649 [ GGGAATGAGCCCTTTGGGCAGTAACCATCTTTCTGGGTTCTCTTCAGGATATCCTCCCATGAAATCACCCGTTGGGAAGAGCTCCTATTGGAATAACCGTTCTGACAACATATTCCATGGGTCACCAACTTTGCACAATTCACATTCGTTTCCAGAACATCATGG]
consensusID : consensus_6976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence
[GATACTTTAAATCTGGAAAGCATCACCTTTGGTACAACAAAGGCTAGCCTTGTCAATGGTACTGGAAGTAGCACTAAGTCATTTACAGCATCCAAAATGGTGCTGGAACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGTTCCAGGACATTGTTCGTTCGGAACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGCTTGAGCCATTTGGGGATATTCGGGCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATATCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAACTTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAACCCTGGTGATCTTTAATCTGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTGGTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAACGACACCATAGATTTATTGAGTTCTATGATGTTATGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACATTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTATACAGCATTTTAATCACGAATTTGAGCAAGACGAAACACAGCATGATTCATTTCAGATTGGTGCACCTTCTGCCAACTCTCCAC]
[+] EMBL CB645669 [GATACTTTAAATCTGGAAAGCATCACCTTTGGTACAACAAAGGCTAGCCTTGTCAATGGTACTGGAAGTAGCACTAAGTCATTTACAGCATCCAAAATGGTGCTGGAACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGTTCCAGGACATTGTTCGTTCGGAACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGCTTGAGCCATTTGGGGATATTCGGGCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATATCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAACTTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAACCCTGGTGATCTTTAATCTGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTGGTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAACGACACCATAGATTTATTGAGTTCTATGATGTTATGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACATTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTATACAGCATTTTAATCACGAATTTGAGCAAGACGAAACACAGCATGATTCATTTCAGATTGGTGCACCTTCTGCCAACTCTCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6976#0 CTCCCTTCTCTCTCTTCCCTCTCAACTCCTCTCTCTCTCTCCTTCGTCGTCTCCTCCTCC 60
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 CCCTCTGCTCCTCCCCCTCGTGGCGCCTCCGGCTTGCCGCGCGCGCCCGCCCGCCCGCCC 120
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 GCGCCCACCGGCGCGAGCCGAGGGTACACGAGGAGTTCGGCCTTTCCGGTTTCCGGTTGT 180
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 GTTGTGAGGAGTGGCGGCGGCGGCGGCGAGGCGGCGACGAGGCGACGCCATTGCGGGGTG 240
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 TGGCGCACACCACACCCCCCTCATCGCCGCTGGACCGGCATCTCTGCGTGTGATTGTGTC 300
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 CGAGAAGAAAGAGGAAGTCGTCGTGCGTGCGTCCCCTCGGCGTCGACTGCTGTATTGATG 360
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 CGATGGAGCAGCGTGAGGATCATACCAAATCATCAGAACCTGCATTCATTCCATCCAAAA 420
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 GGACTCATCAGATGAGAAACATATGGGCATGGGGAGGTCCTTCTTCAACTACAGTCAACG 480
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 GATCAAGTGACGCGGTCTTGTTCTCCAGCTCGTTGCCATCAGTTCTGCAATTTGGAAAAC 540
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 TGCCAGGTAAAGAAAGGGAGTACAATGCTCAACCAAAGGATGATATGTTTCCCATGATGA 600
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 AGCAGCCAGGCACTAATGCTAGAGTGGCTGACCCCATGGATGATGTAGCACAGCATTTGA 660
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 TTGGAAATCTGTTACCAGATGATGAAGAGCTATTGGCTGGGGTAATTGAAGATTTTGATC 720
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 ATGTTAAACTGAGAACCCAAGTTGAGGAATCAGAAGAATATGATGTTTTCCGCAATAGTG 780
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 GGGGTATGGAGCTGGATATTGACCCTCTGGAAAGCATCACCTTTGGTACAGCAAAGGCTA 840
consensus_6976#1 --------------GATACTTTAAATCTGGAAAGCATCACCTTTGGTACAACAAAGGCTA 46
**** * ************************* *********
consensus_6976#0 GCCTTGTCAATGGTACTGGAAGTAGCACTAA-TCAGT-ACAGCATCCAAAATGGTGCTGG 898
consensus_6976#1 GCCTTGTCAATGGTACTGGAAGTAGCACTAAGTCATTTACAGCATCCAAAATGGTGCTGG 106
******************************* *** * **********************
consensus_6976#0 AACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGT-CCAGGACATTGTTCGTTCGGA 957
consensus_6976#1 AACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGTTCCAGGACATTGTTCGTTCGGA 166
************************************** *********************
consensus_6976#0 ACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGTTTGAGCCATTTGGGGATA 1017
consensus_6976#1 ACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGCTTGAGCCATTTGGGGATA 226
***************************************** ******************
consensus_6976#0 TTCGGTCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATA 1077
consensus_6976#1 TTCGGGCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATA 286
***** ******************************************************
consensus_6976#0 TCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAAC 1137
consensus_6976#1 TCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAAC 346
************************************************************
consensus_6976#0 TTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAA 1197
consensus_6976#1 TTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAA 406
************************************************************
consensus_6976#0 CCCTGGTGATCTTTAAT-TGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTG 1256
consensus_6976#1 CCCTGGTGATCTTTAATCTGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTG 466
***************** ******************************************
consensus_6976#0 GTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAGCGACACCATAGATTTA 1316
consensus_6976#1 GTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAACGACACCATAGATTTA 526
******************************************* ****************
consensus_6976#0 TTGAGTTCTATGATGTTAGGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACA 1376
consensus_6976#1 TTGAGTTCTATGATGTTATGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACA 586
****************** *****************************************
consensus_6976#0 TTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTA 1436
consensus_6976#1 TTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTA 646
************************************************************
consensus_6976#0 TACAGCATTTTAATCACGAATTTGAGCAAGACGAAACAAAGCATAATTCATTTCAGATTG 1496
consensus_6976#1 TACAGCATTTTAATCACGAATTTGAGCAAGACGAAACACAGCATGATTCATTTCAGATTG 706
************************************** ***** ***************
consensus_6976#0 GTTCACCTTCTGCCAACTCTCCACCAAGTTTGTGGTCCCAACTTGGCAGCCCAACAGATG 1556
consensus_6976#1 GTGCACCTTCTGCCAACTCTCCAC------------------------------------ 730
** *********************
consensus_6976#0 AAAATAAATTAAATGCACTCAATGAAACTGCATTTAATGGGGGAATGAGCCCTTTGGGCA 1616
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 GTAACCATCTTTCTGGGTTCTCTTCAGGATATCCTCCCATGAAATCACCCGTTGGGAAGA 1676
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 GCTCCTATTGGAATAACCGTGCTGACAACATATTCCATGGGTCACCAACTTTGCACAATT 1736
consensus_6976#1 ------------------------------------------------------------
consensus_6976#0 CACATTCGTTTCCAGAACATCATGG 1761
consensus_6976#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||