These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1183 fasta sequence [CGGCGGCCGGGTGCGGCGGCGACCGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCCTCGTCGTGCACGTCGTCGCTCGGCTCCGTCAATGACAGTGCCGTCGTCGCGTGCGTCGTCAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACGTCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGCCCTCGCCGCTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGCCGTCGCGTCCGCGAGGCCGCCTCCGTCGTCCGCTGGATCTGCCGCCCGAACTCCCCGCAGCGGCCCAACAACGCCACCTTCACCTTCGTCGTCGCGGCAGGCGGGCTCGACGGCGACGACGGCGACCGGGCGAGCGTGGCGTGGTGACGACTAGCGAGGCGGCGGCGAGCGGGCCCCGCCCAGATCCGACGAGTTGCGGCGGCCGGTTGCGTGCGGGCCGGCGATTTCCGCTTTTTTTTTTTTTTGTTTCGTGCGGGCGGAATAATTTGACCGCACAGGATAATCGATTATCCCGTGTATCCCATACGGTTGGCCCATCCGCACACGAAAATATTGATTTTTCCAGACACTTGGGTGTAGACGGACAAATCATCCGCACGGAAAAATCATTTTGACTGCACGGAAAAATCATTTTGACTGCACGGAAAAATGTTTTACATAGTAGTGTCGACGAAACCAACTTTCTAGAAATGCCACTGTACAAGCGTCTTTGCCCTAGAAATACTATCGTCGTTATGTTTCCGTTAGCACCCCTTCGTTAAGTGCTACAAAAAGGCCATTTTACCCCTACGAATTGCTAAAAAGTAAATTAAAACTTTTGCTCTTTTCATAAGCTTACACTAATATATAGGTTGTTCTTTACACTAAATTATTATAAATTATTATAGGTTGACTGGAAGAGCAAAAGTTTAATGGGCTTTCAGCATTTTGTAGGGGTAAAATTGTCTTTTTTATAGTACTTAACAGAGGGCTACTAACGAAAATCTAACGGTGATGATATTTTTGGAACAAAGACGCTTCTATGATGGCATTTCCGGAAAGTTGGGTTCGTCAGTGTAAAAAATTAGAAGATAAAGAGAGTTGGTAGTGAAATATGAATAGTGTGAGAAGATTCATGAAAA] [+] EMBL AK068539 [CGGCGGCCGGGTGCGGCGGCGACCGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCCTCGTCGTGCACGTCGTCGCTCGGCTCCGTCAATGACAGTGCCGTCGTCGCGTGCGTCGTCAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACGTCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGCCCTCGCCGCTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGCCGTCGCGTCCGCGAGGCCGCCTCCGTCGTCCGCTGGATCTGCCGCCCGAACTCCCCGCAGCGGCCCAACAACGCCACCTTCACCTTCGTCGTCGCGGCAGGCGGGCTCGACGGCGACGACGGCGACCGGGCGAGCGTGGCGTGGTGACGACTAGCGAGGCGGCGGCGAGCGGGCCCCGCCCAGATCCGACGAGTTGCGGCGGCCGGTTGCGTGCGGGCCGGCGATTTCCGCTTTTTTTTTTTTTTGTTTCGTGCGGGCGGAATAATTTGACCGCACAGGATAATCGATTATCCCGTGTATCCCATACGGTTGGCCCATCCGCACACGAAAATATTGATTTTTCCAGACACTTGGGTGTAGACGGACAAATCATCCGCACGGAAAAATCATTTTGACTGCACGGAAAAATCATTTTGACTGCACGGAAAAATGTTTTACATAGTAGTGTCGACGAAACCAACTTTCTAGAAATGCCACTGTACAAGCGTCTTTGCCCTAGAAATACTATCGTCGTTATGTTTCCGTTAGCACCCCTTCGTTAAGTGCTACAAAAAGGCCATTTTACCCCTACGAATTGCTAAAAAGTAAATTAAAACTTTTGCTCTTTTCATAAGCTTACACTAATATATAGGTTGTTCTTTACACTAAATTATTATAAATTATTATAGGTTGACTGGAAGAGCAAAAGTTTAATGGGCTTTCAGCATTTTGTAGGGGTAAAATTGTCTTTTTTATAGTACTTAACAGAGGGCTACTAACGAAAATCTAACGGTGATGATATTTTTGGAACAAAGACGCTTCTATGATGGCATTTCCGGAAAGTTGGGTTCGTCAGTGTAAAAAATTAGAAGATAAAGAGAGTTGGTAGTGAAATATGAATAGTGTGAGAAGATTCATGAAAA] [+] EMBL AK062334 [ GGCCGGGTGCGGCGGCGACCGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCCTCGTCGTGCACGTCGTCGCTCGGCTCCGTCAATGACAGTGCCGTCGTCGCGTGCGTCGTCAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACGTCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGCCCTCGCCGCTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGCCGTCGCGTCCGCGAGGCCGCCTCCGTCGTCCGCTGGATCTGCCGCCCGAACTCCCCGCAGCGGCCCAACAACGCCACCTTCACCTTCGTCGTCGCGGCAGGCGGGCTCGACGGCGACGACGGCGACCGGGCGAGCGTGGCGTGGTGACGACTAGCGAGGCGGCGGCGAGCGGGCCCCGCCCAGATCCGACGAGTTGCGGCGGCCGGTTGCGTGCGGGCCGGCGATTTCCGCTTTTTTTTTTTTTTGTTTCGTGCGGGCGGAATAATTTGACCGCACAGGATAATCGATTATCCCGTGTATCCCATACGGTTGGCCCATCCGCACACGAAAATATTGATTTTTCCAGACACTTGGGTGTAGACGGACAAATCATCCGCACGGAAAAATCATTTTGACTGCACGGAAAAATCA ] [+] EMBL OSS15479A [ CGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCCTCGTCGTGCACGTCGTCGCTCGGCTCCGTCAATGACAGTGCCGTCGTCGCGTGCGTCGTCAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACGTCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGNCCTCGCCGCTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGNCGTCGCGTCCGCGAGGCCGNCTCCGTAGTCCGCTG ] consensusID : consensus_6983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1088 fasta sequence [AAAAAAAAAAAAAAAAAAAAAACGGCCCAATCCAGCCGCGCCTCTCCGTGGCCCAGAAGATGCTGCGCCGCCTACCGCTCCGCCTCGCGCCGACGCTCGCCGGCGGCGGCGGCGGCGCCATCCCCCACCGCGTCCTTCGCGGCGCGTGCACCACCGCGCCAGCCTCCAGGCCCCCGCCCTACCCGCTCTCCCCGTCCGACCTCGACGCCGTCTCCGCGCTCCTCCCGCGCCTCGTCTCCGCGGGGAACGTCCCCGCCGCCGGCCGCCTCCTCACCGCCGCGCTCCTCCTCCCGGGCTCCACGGAGCGCCTCCCGTTCTCCCCGCTCGCCGCGCACCTCGCCTCCATGCCCACCCTCACCCCGGCCTTCGCGCTCCTCACCGCCATCCGCCACCACCCGCTCCGCCCCTCGCCGCTGCCCCTCGCCACGCCGCTCCTCGGCCACCTCCTCTCGCGCCGCCGCGCCCGCGAGGCCGCCTCCGTCGTCCGCTGGCTCTGCCGCCCGGACTCCCCGCAGCGGCCCGACAGCGCCACCTTCGCTGTCGCCGTCGCGGGGCTCTGCCGGCTCGAGGACCCCAGGAACGCGCTCGCCGCGCTCCGGGAGATGGCCGTGGACGGGATACGGACCTCGGCGAAGCTGCGGGAGTCGGTGCGGGACGCGATGCTGCAGGACGCGAGGATCGAGGAGGCGTGGGCGCTGGAGGCGGCGATGAAGCAGCCGGACTCCGGCAAGCTGGCTGAGCTGGTCCAGAAGCTTCTCGAAGAGTGGGAGGACTGAGACATTGCCGAGGTCGAAGGATATTGGTTCTCCCTTGCTTCTCGATCAAGGCACAACGTGTTGAAAAATGGACTTTTTTCAGAACAAAGAACAGACAGTTCTCCCTAAACAGAGAGTACAAAGCTTCGGGTTTATAAGAACTTGCAAGATTAGGATTACAAAGCTTCTAGTTTACAAAAACTTGCAAGATTAGGATTAGCGATTGATTTATCTATCAAAGGGATGTTTATAAGAACTTGCAAGATTAGGATTAGCGATTGGTTTATCTATCAAAGAGATGGTTTATAAGAGATGATAAGTCACCTGTACAAT] [+] EMBL AK111368 [AAAAAAAAAAAAAAAAAAAAAACGGCCCAATCCAGCCGCGCCTCTCCGTGGCCCAGAAGATGCTGCGCCGCCTACCGCTCCGCCTCGCGCCGACGCTCGCCGGCGGCGGCGGCGGCGCCATCCCCCACCGCGTCCTTCGCGGCGCGTGCACCACCGCGCCAGCCTCCAGGCCCCCGCCCTACCCGCTCTCCCCGTCCGACCTCGACGCCGTCTCCGCGCTCCTCCCGCGCCTCGTCTCCGCGGGGAACGTCCCCGCCGCCGGCCGCCTCCTCACCGCCGCGCTCCTCCTCCCGGGCTCCACGGAGCGCCTCCCGTTCTCCCCGCTCGCCGCGCACCTCGCCTCCATGCCCACCCTCACCCCGGCCTTCGCGCTCCTCACCGCCATCCGCCACCACCCGCTCCGCCCCTCGCCGCTGCCCCTCGCCACGCCGCTCCTCGGCCACCTCCTCTCGCGCCGCCGCGCCCGCGAGGCCGCCTCCGTCGTCCGCTGGCTCTGCCGCCCGGACTCCCCGCAGCGGCCCGACAGCGCCACCTTCGCTGTCGCCGTCGCGGGGCTCTGCCGGCTCGAGGACCCCAGGAACGCGCTCGCCGCGCTCCGGGAGATGGCCGTGGACGGGATACGGACCTCGGCGAAGCTGCGGGAGTCGGTGCGGGACGCGATGCTGCAGGACGCGAGGATCGAGGAGGCGTGGGCGCTGGAGGCGGCGATGAAGCAGCCGGACTCCGGCAAGCTGGCTGAGCTGGTCCAGAAGCTTCTCGAAGAGTGGGAGGACTGAGACATTGCCGAGGTCGAAGGATATTGGTTCTCCCTTGCTTCTCGATCAAGGCACAACGTGTTGAAAAATGGACTTTTTTCAGAACAAAGAACAGACAGTTCTCCCTAAACAGAGAGTACAAAGCTTCGGGTTTATAAGAACTTGCAAGATTAGGATTACAAAGCTTCTAGTTTACAAAAACTTGCAAGATTAGGATTAGCGATTGATTTATCTATCAAAGGGATGTTTATAAGAACTTGCAAGATTAGGATTAGCGATTGGTTTATCTATCAAAGAGATGGTTTATAAGAGATGATAAGTCACCTGTACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6983#0 CGGCGGCCGGGTGCGGCGGCGACCGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCC 60 consensus_6983#1 AAAAAAAAAAAAAAAAAAAAAACGGCCCAATCCAGCCGCGCCTCTCCGTGGCC-CAGAAG 59 ** * * * **** **** * *** * * consensus_6983#0 TCGTCGTGCACGTCGTCGCTCGGCTCCGTCAATGACAGT-GCCGTCGTCGCGTGCGTCGT 119 consensus_6983#1 ATGCTGCGCCGCCTACCGCTCCGCCTCG-CGCCGACGCTCGCCGGCGGCGGCGGCGGCGC 118 * * ** ***** ** ** * *** * **** ** ** *** ** consensus_6983#0 CAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACG 179 consensus_6983#1 CA--TCCCCCACC--GCGTCCTTCGCGGCGCGTGCACCACCGCGCCAGCCTCCAGG---- 170 ** * * * * ***** * * *** * * ** * * ** consensus_6983#0 TCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGCCCTCGCCG 239 consensus_6983#1 CCCCCGCC-CTACCCGCTCTCCC-CGTCCGACCTCGAC-GCCGTCTCCGCGCTCCTCCCG 227 ******* * * ** ** * * * ** ** * ** ** ***** *** * *** consensus_6983#0 CTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGCCGTCGCGTCCGCGAGGCC 299 consensus_6983#1 CGCCTCGTCTCCGCGGGGAACGTCC-CCGCCGCCGGCCGCCTCCTCACCGCCGCGCTCCT 286 * * * ** ** ** * * * ** ** ** *** * ** * ***** * consensus_6983#0 GCCTCCGTCGTCCGCTGGATCTGCCGCCCGAACTCCCCGCA-GCGGCCCAACAACGCCAC 358 consensus_6983#1 CCTCCCGGGCTCCACGGAGC--GCCTCCCGTTCTCCCCGCTCGCCGCGCACCT-CGCCTC 343 * *** *** * * *** **** ******** ** ** ** * **** * consensus_6983#0 CTTCACCTTCGTCGTCGCGGCAGGCGGGCTCGACGGCGACGACGGCGACCGGGCGAGC-G 417 consensus_6983#1 CATGCCCACCCTCACCCCGGCCTTCGCGCTCCTCACCGCCATCCGCCACCACCCGCTCCG 403 * * ** * ** * **** ** **** * ** * * ** *** ** * * consensus_6983#0 TGGCGTGGTGACGACTAGCGAGGCGGCGGCGAGCGGGCCCCGCCCAGATCCGACGAGTTG 477 consensus_6983#1 CCCCTCGCCGCTGCCCCTCGCCACGCCGCTCCTCGGCCACCTCC----TCT--CGCGCCG 457 * * * * * ** ** ** *** * ** ** ** ** * * consensus_6983#0 CGGCGGCCGGTTGCGTGCGGGCCGGCGATTTCCGCTTTTTTTTTTTTTTGTTTCGTGCGG 537 consensus_6983#1 CCGCGCCCG--------CGAG---GCCGCCTCCGTCGTCCGCTGGCTCTGC--CGCCCGG 504 * *** *** ** * ** **** * * * ** ** *** consensus_6983#0 GCGGAATAATTTGACCGCACAGGATAATCGATTATCCCGTGTATCCCATACGGTTGGCCC 597 consensus_6983#1 ACTCCCCGCAGCGGCCCGACAGCGCCACCTTCGCTGTCGC-CGTCGCG-GGGCTCTGCCG 562 * * ** **** * * * ** ** * * * *** consensus_6983#0 ATCCGCACACGAAAATATTGATTTTTCCAGACACTTGGGTGTAGACGGACAAATCATCCG 657 consensus_6983#1 GCTCGAGGACCCCAGGAACGCGCTCGCCGCGCTCCGGGAGATGGCCG-----------TG 611 ** ** * * * * ** * * ** * * ** * consensus_6983#0 CACGGAAAAATCATTTTGACTGCACGGAAAAATCATTTTGACTGCACGGAAAAATGTTTT 717 consensus_6983#1 GACGGGATACGGACCTCGGCGAAGCTGCGGGA--GTCGGTGCGGGACGCGATGCTGCAGG 669 **** * * * * * * * * * * * * *** * ** consensus_6983#0 ACATAGTAGTGTCGACGAAACCAACTTTCTAGAAATGCCACTGTACAAGCGTCTTTGCCC 777 consensus_6983#1 ACGCG--AGGATCGAGGAGGCGTGGGCGCTGGAGGCGGCGATG---AAGCAGCCGGACTC 724 ** ** **** ** * ** ** * * ** **** * * * consensus_6983#0 TAGAAATACTATCGTCGTTATGTTTCCGTTAGCACCCCTTCGTTAAGTGCTACAAAAAGG 837 consensus_6983#1 CGGCAA-GCTG--GCTGAGCTGGTCC----AGAAGCTTCTCGAAGAGTGGGAGGACTGAG 777 * ** ** * * ** * * ** * * *** **** * * * consensus_6983#0 CCATTTTACCCCTACGAATTGCTAAAAAGTAAATTAAAACTTTTGCTCTTTTCATAAGCT 897 consensus_6983#1 ACATTGC-------CGAGGTCGAAGGATATTGGTTC--TCCCTTGCTTCTCGATCAAGGC 828 **** *** * * * * ** * ***** * *** consensus_6983#0 TACACTAATATATAGGTTGTTCTTTACACTAAATTATTATAAATTATTATAGGTTGACTG 957 consensus_6983#1 ACAACGTGTTGAAAAATGGACTTTTTTCAGAACAAAGAACAGACAGTTCTCCCTAAACAG 888 ** * * * * * *** ** * * * * ** * * ** * consensus_6983#0 GAAGAGCAAAAGTTTAATGGGCTTTCAGCATTTTGTAGGGGTAAAATTGTCTTTTTTATA 1017 consensus_6983#1 AGAGTACAAAGCTT---CGGGTTTATAAGAACTTGCAAGATTAGGATTACAAAGCTTCTA 945 ** **** ** *** ** * * *** * * ** *** ** ** consensus_6983#0 GTACTTAACAGAGGGCTACTAACGAAAATCTAACGGTGATGATATTTTTGGAACAAAGAC 1077 consensus_6983#1 GT---TTACAAAAACTTGCAAGATTAGGATTAGCGAT--TGATTTATCTATCAAAGGGAT 1000 ** * *** * * * * * ** ** * **** * * * * * ** consensus_6983#0 GCTTCTATGA--TGGCATTTCCGGAAAGTTGGGTTCGTCAGTGTAAAAAATTAGAAGATA 1135 consensus_6983#1 GTTTATAAGAACTTGCAAGATTAGGATTAGCGATTGGTTTATCTATCAAAGAGATGGTTT 1060 * ** ** ** * *** * * * ** ** * ** *** * * consensus_6983#0 AAGAGAGTTGGTAGTGAAATATGAATAGTGTGAGAAGATTCATGAAAA 1183 consensus_6983#1 ATAAGAGATGATAA-GTCACCTGTACAAT------------------- 1088 * **** ** ** * * ** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||