cluster # 6986

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Oryza sativa
cluster # 6986 cluster # 6986 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6986#0 length = 460 sequences # 3

consensus_6986#1 length = 415 sequences # 1

consensusID : consensus_6986#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 460
fasta sequence

                              [GCGACGCGTGGGCGACGCGTACGCGAGCAGGGTGTTGCTGAGAGCGGCGGCGCAGGCCATGA-GGCCGCGAGGCAGCCGGCGCCTGCGGTGGCCAAGCCGGTGCCAGCGGCGAAGCCATCGGCGGTGGCGC-CAGGCACGGCTCAGCGGCAGCAGGCGAGGCGGCTCTCCGGTGGCGTGGCTGAGCCGGCGGAGAAGGCGGCCGTGGCGGAGAGGATGAGGCGGCGGCGCAGGGAGAAGTCCGAGAATGTGATGCAGCTCGTGTGCTGGGGACCCAGTTAGCCGCGATGCTTCTGTTGCTGCTGTAGTGCTGTGACATCAGTTGAGCAGAGTGACTAGTGTGATTTGTGCCTTATGTTCGTTTCCTTTTGTAAGATGGTAGAATCTGTGAAATTTTGACGGTATTGTATTCTGCAAGATGCTATGAAATAGTGAAGTACTGTTCCTTTTCTGAAAAAAAAAA]

[+] EMBL BI803412             [GCGACGCGTGGGCGACGCGTGGGCGA CAGGGTGTTGCTGAGAGCGGCGGCGCAGGCCATGA GGCCGCGAGGCAGCCGGCGCCTGCGGTGGCCAAGCCGGTGCCAGCGGCGAAGCCATCGGCGGTGGCGC CAGGCACGGCTCAGCGGCAGCAGGCGAGGCGGCTCTCCGGTGGCGTGGCTGAGCCGGCGGAGAAGGCGGCCGTGGCGGAGAGGATGAGGCGGCGGCGCAGGGAGAAGTCCGAGAATGTGATGCAGCTCGTGTGCTGGGGACCCAGTTAGCCGCGATGCTTCTGTTGCTGCTGTAGTGCTGTGACATCAGTTGAGCAGAGTGACTAGTGTGATTTGTGCCTTATGTTCGTTTCCTTTTGTAAGATGGTAGAATCTGTGAAATTTTGACGGTATTGTATTCTGCAAGATGCTATGAAATACTGAAGTACTGTTCCTTTTCTGAAAAAAAAAA]
[+] EMBL BI804166             [                    ACGCGAGCAGGGTGTTGCTGAGAGCGGCGGCGCAGGCCATGAGGGCCGCGAGGCAGCCGGCGCCTGCGGTGGCCAAGCCGGTGCCAGCGGCGAAGCCATCGGCGGTGGCGCACAGGCACGGCTCAGCGGCAGCAGGCGAGGCGGCTCTCCGGTGGCGTGGCTGAGCCGGCGGAGAAGGCGGCCGTGGCGGAGAGGATGAGGCGGCGGCGCAGGGAGAAGTCCGAGAATGTGATGCAGCTCGTGTGCTGGGGACCCAGTTAGCCGCGATGCTTCTGTTGCTGCTGTAGTGCTGTGACATCAGTTGAGCAGAGTGACTAGTGTGATTTGTGCCTTATGTTCGTTTCCTTTTGTAAGATGGTAGAATCTGTGAAATTTTGACGGTATTGTATTCTGCAAGATGCTATGAAATAGTGAAGTACTGTTCCTTTTCTGAAAAA     ]
[+] EMBL BI803895             [                    ACGCGAGCAGGGTGTTGCTGAGA CGGCGGCGCAGGCCATGA GGCCGCGAGGCAGCCGGCGCCTGCGGTGGCCAAGCCGGTGCCAGCGGCGAAGCCATCGGCGGTGGCGC CAGGCACGGCTCAGCGGCAGCAGGCGAGGCGGCTCTCCGGTGGCGTGGCTGAGCCGGCGGAGAAGGCGGCCGTGGCGGAGAGGATGAGGCGGCGGCGCAGGGAGAAGTCCGAGAATGTGATGCAGCTCGTGTGCTGGGGACCCAGTTAGCCGCGATGCTTCTGTTGCTGCTGTAGTGCTGTGACATCAGTTGAGCAGAGTGACTAGTGTGATTTGTGCCTTATGTTCGTTTCCTTTTGTAAGATGGTAGAATCTGTGAAATTTTGACGGTATTGTATTCTGCAAGATGCTATGAAATAGTGAAGTACTGTTCCTTTTCTGAAAAA     ]




>consensus_6986#0
GCGACGCGTGGGCGACGCGTACGCGAGCAGGGTGTTGCTGAGAGCGGCGGCGCAGGCCAT
GAGGCCGCGAGGCAGCCGGCGCCTGCGGTGGCCAAGCCGGTGCCAGCGGCGAAGCCATCG
GCGGTGGCGCCAGGCACGGCTCAGCGGCAGCAGGCGAGGCGGCTCTCCGGTGGCGTGGCT
GAGCCGGCGGAGAAGGCGGCCGTGGCGGAGAGGATGAGGCGGCGGCGCAGGGAGAAGTCC
GAGAATGTGATGCAGCTCGTGTGCTGGGGACCCAGTTAGCCGCGATGCTTCTGTTGCTGC
TGTAGTGCTGTGACATCAGTTGAGCAGAGTGACTAGTGTGATTTGTGCCTTATGTTCGTT
TCCTTTTGTAAGATGGTAGAATCTGTGAAATTTTGACGGTATTGTATTCTGCAAGATGCT
ATGAAATAGTGAAGTACTGTTCCTTTTCTGAAAAAAAAAA

consensusID : consensus_6986#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [CGCGACCAGGGTTTTCTGAGTAGCGCGGCCAGCCCATGAGGCCGCGAGCACCGGCGCCTGCGGTGCCAACCGGTGCCAGCGGCAGAACCATCGGCGGTGGCAGCCAGGCACGGCTCAGCGCACAGGCGAGCGGCTCTCCGGTGGCGTGGCTGACCGGCGGAGAAGCGCCGTGCGGAGAGGATGAGCGCGGCGCAGGGAGAAGTCCGAGAATGTGATCAGCTCGTGTACTGGGGACCCAGTTACCCCGATGCTTCTGTTGCTGCTGTAGTCTGTGACATCAGTTGACCAGAGTGACTAGTGTGATTTGCCCTTATGTTCGTTCCCTTTTGTAAGATGGTAAATCTGTGAAAATTTGCCGGTATTGTATTCTGCAAGATGCTACCCACTAGTGAAGTCCGGTCCCTTTTCGGAAAAA]

[+] EMBL BI802949             [CGCGACCAGGGTTTTCTGAGTAGCGCGGCCAGCCCATGAGGCCGCGAGCACCGGCGCCTGCGGTGCCAACCGGTGCCAGCGGCAGAACCATCGGCGGTGGCAGCCAGGCACGGCTCAGCGCACAGGCGAGCGGCTCTCCGGTGGCGTGGCTGACCGGCGGAGAAGCGCCGTGCGGAGAGGATGAGCGCGGCGCAGGGAGAAGTCCGAGAATGTGATCAGCTCGTGTACTGGGGACCCAGTTACCCCGATGCTTCTGTTGCTGCTGTAGTCTGTGACATCAGTTGACCAGAGTGACTAGTGTGATTTGCCCTTATGTTCGTTCCCTTTTGTAAGATGGTAAATCTGTGAAAATTTGCCGGTATTGTATTCTGCAAGATGCTACCCACTAGTGAAGTCCGGTCCCTTTTCGGAAAAA]




>consensus_6986#1
CGCGACCAGGGTTTTCTGAGTAGCGCGGCCAGCCCATGAGGCCGCGAGCACCGGCGCCTG
CGGTGCCAACCGGTGCCAGCGGCAGAACCATCGGCGGTGGCAGCCAGGCACGGCTCAGCG
CACAGGCGAGCGGCTCTCCGGTGGCGTGGCTGACCGGCGGAGAAGCGCCGTGCGGAGAGG
ATGAGCGCGGCGCAGGGAGAAGTCCGAGAATGTGATCAGCTCGTGTACTGGGGACCCAGT
TACCCCGATGCTTCTGTTGCTGCTGTAGTCTGTGACATCAGTTGACCAGAGTGACTAGTG
TGATTTGCCCTTATGTTCGTTCCCTTTTGTAAGATGGTAAATCTGTGAAAATTTGCCGGT
ATTGTATTCTGCAAGATGCTACCCACTAGTGAAGTCCGGTCCCTTTTCGGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6986#0      GCGACGCGTGGGCGACGCGTACGCGAGCAGGGTGTTGCTGAGAGCGGCGGCGCAGGCCAT 60
consensus_6986#1      ---------------------CGCGACCAGGGT-TTTCTGAGTAGCGCGGC-CAGCCCAT 37
                                           ***** ****** ** *****    ***** *** ****

consensus_6986#0      GAGGCCGCGAGGCAGCCGGCGCCTGCGGTGGCCAAGCCGGTGCCAGCGGCGAAGCCATCG 120
consensus_6986#1      GAGGCCGCGAGC--ACCGGCGCCTGCGGTG--CCAACCGGTGCCAGCGGCAGAACCATCG 93
                      ***********    ***************  * * **************  * ******

consensus_6986#0      GCGGTGGC-GCCAGGCACGGCTCAGCGGCAGCAGGCGAGGCGGCTCTCCGGTGGCGTGGC 179
consensus_6986#1      GCGGTGGCAGCCAGGCACGGCTCAGCG--CACAGGCGAG-CGGCTCTCCGGTGGCGTGGC 150
                      ******** ******************    ******** ********************

consensus_6986#0      TGAGCCGGCGGAGAAGGCGGCCGTGGCGGAGAGGATGAGGCGGCGGCGCAGGGAGAAGTC 239
consensus_6986#1      TGA-CCGGCGGAGAAG--CGCCGTG-CGGAGAGGATGAG--CGCGGCGCAGGGAGAAGTC 204
                      *** ************   ****** *************   ******************

consensus_6986#0      CGAGAATGTGATGCAGCTCGTGTGCTGGGGACCCAGTTAGCCGCGATGCTTCTGTTGCTG 299
consensus_6986#1      CGAGAATGTGAT-CAGCTCGTGTACTGGGGACCCAGTTA-CCCCGATGCTTCTGTTGCTG 262
                      ************ ********** *************** ** *****************

consensus_6986#0      CTGTAGTGCTGTGACATCAGTTGAGCAGAGTGACTAGTGTGATTTGTGCCTTATGTTCGT 359
consensus_6986#1      CTGTAGT-CTGTGACATCAGTTGACCAGAGTGACTAGTGTGATTTGC-CCTTATGTTCGT 320
                      ******* **************** *********************  ************

consensus_6986#0      TTCCTTTTGTAAGATGGTAGAATCTGTGAAATTTTGACGGTATTGTATTCTGCAAGATGC 419
consensus_6986#1      TCCCTTTTGTAAGATGGTA-AATCTGTGAAAATTTGCCGGTATTGTATTCTGCAAGATGC 379
                      * ***************** *********** **** ***********************

consensus_6986#0      TATGAAATAGTGAAGTACTGTTCCTTTTCTGAAAAAAAAAA 460
consensus_6986#1      TACCCACTAGTGAAGTCCGGTCCCTTTTCGGAAAAA----- 415
                      **   * ********* * ** ******* ******