These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 784 fasta sequence [ACGAGGCCCAAATCCAACCAACTCCCTCCGACACCATCATCCGCATCCCCCTCGCCGCCGCCGCCGCCGCCGCGGGCTCCGAGCCTCCCACCAGGCCAGCCGGGGTGGGTGGAAATTCCTGATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGTCGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGCCGCCCAGCCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGTCTGCCAATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTACAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCAACCTTGCTATCAACAAAGCCAGAGTTATAGCAGCAGAGCAAGAAGCACCAGGTGGACCTGATTTGGACCTGCCCTTGCGAATTCTTCTACTTGGAAAGACTGGTGTGGGAAAGAGTGCCACGATAAACTCCATTTTTGATGAACCAAAGGTTGCTACCAATGCATTAGCTCCTGCTACTGAAAGGATAAGGAGGATTGATGGAACAATCAAAGGAATAAGAGTTACAGTTATCGACACACCTGGTTTGTT] [+] EMBL CF307378 [ACGAGGCCCAAATCCAACCAACTCCCTCCGACACCATCATCCGCATCCCCCTCGCCGCCGCCGCCGCCGCCGCGGGCTCCGAGCCTCCCACCAGGCCAGCCGGGGTGGGTGGAAATTCCTGATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGTCGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGCCGCCCAGCCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGTCTGCCAATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTACAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCAACCTTGCTATCAACAAAGCCAGAGTTATAGCAGCAGA ] [+] EMBL CB636643 [ CCTCGCCGCCGCCGCCGCCGCCGCGGGCTCCGAGCCTCCCACCAGGCCAGCCGGGGTGGGTGGAAATTCCTGATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGTCGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGCCGCCCAGCCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGTCTGCCAATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTACAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCAACCTTGCTATCAACAAAGCCAGAGTTATAGCAGCAGAGCAAGAAGCACCAGGTGGACCTGATTTGGACCTGCCCTTGCGAATTCTTCTACTTGGAAAGACTGGTGTGGGAAAGAGTGCCACGATAAACTCC ] [+] EMBL CB639835 [ GCCCAGCCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGTCTGCCAATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTACAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCAACCTTGCTATCAACAAAGCCAGAGTTATAGCAGCAGAGCAAGAAGCACCAGGTGGACCTGATTTGGACCTGCCCTTGCGAATTCTTCTACTTGGAAAGACTGGTGTGGGAAAGAGTGCCACGATAAACTCCATTTTTGATGAACCAAAGGTTGCTACCAATGCATTAGCTCCTGCTACTGAAAGGATAAGGAGGATTGATGGAACAATCAAAGGAATAAGAGTTACAGTTATCGACACACCTGGTTTGTT] consensusID : consensus_6987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [ATCCCCCTCGCCGCCGCCGCCGCCGCCGCGGGCTACGACCCTCCCACCAAGCCATCCGGGGTGGGTGGAAATTCCTGATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGTCGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGTTTTTTTTTTCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGCCCCCCCATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTTCAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCA] [+] EMBL CB641302 [ATCCCCCTCGCCGCCGCCGCCGCCGCCGCGGGCTACGACCCTCCCACCAAGCCATCCGGGGTGGGTGGAAATTCCTGATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGTCGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGTTTTTTTTTTCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGCCCCCCCATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTTCAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6987#0 ACGAGGCCCAAATCCAACCAACTCCCTCCGACACCATCATCCGCATCCCCCTCGCCGCCG 60 consensus_6987#1 --------------------------------------------ATCCCCCTCGCCGCCG 16 **************** consensus_6987#0 CCGCCGCCGCCGCGGGCTCCGAGCCTCCCACCAGGCCAGCCGGGGTGGGTGGAAATTCCT 120 consensus_6987#1 CCGCCGCCGCCGCGGGCTACGACCCTCCCACCAAGCCATCCGGGGTGGGTGGAAATTCCT 76 ****************** *** ********** **** ********************* consensus_6987#0 GATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGT 180 consensus_6987#1 GATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGT 136 ************************************************************ consensus_6987#0 CGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGCCGCCCAGC-CCGGGGGC 239 consensus_6987#1 CGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGTTTTTTTTTTCCGGGGGC 196 ****************************************** ******** consensus_6987#0 GATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGTCTGCCAATAGATTTCCA 299 consensus_6987#1 GATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGCCCCCCCATAGATTTCCA 256 ****************************************** * ** *********** consensus_6987#0 TCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGAT 359 consensus_6987#1 TCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGAT 316 ************************************************************ consensus_6987#0 CATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTG 419 consensus_6987#1 CATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTG 376 ************************************************************ consensus_6987#0 CGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTAC 479 consensus_6987#1 CGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTTC 436 ********************************************************** * consensus_6987#0 AGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCAACCTT 539 consensus_6987#1 AGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCA----- 491 ******************************************************* consensus_6987#0 GCTATCAACAAAGCCAGAGTTATAGCAGCAGAGCAAGAAGCACCAGGTGGACCTGATTTG 599 consensus_6987#1 ------------------------------------------------------------ consensus_6987#0 GACCTGCCCTTGCGAATTCTTCTACTTGGAAAGACTGGTGTGGGAAAGAGTGCCACGATA 659 consensus_6987#1 ------------------------------------------------------------ consensus_6987#0 AACTCCATTTTTGATGAACCAAAGGTTGCTACCAATGCATTAGCTCCTGCTACTGAAAGG 719 consensus_6987#1 ------------------------------------------------------------ consensus_6987#0 ATAAGGAGGATTGATGGAACAATCAAAGGAATAAGAGTTACAGTTATCGACACACCTGGT 779 consensus_6987#1 ------------------------------------------------------------ consensus_6987#0 TTGTT 784 consensus_6987#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||