cluster # 6987

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Oryza sativa
cluster # 6987 cluster # 6987 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6987#0 length = 784 sequences # 3

consensus_6987#1 length = 491 sequences # 1

consensusID : consensus_6987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 784
fasta sequence

                              [ACGAGGCCCAAATCCAACCAACTCCCTCCGACACCATCATCCGCATCCCCCTCGCCGCCGCCGCCGCCGCCGCGGGCTCCGAGCCTCCCACCAGGCCAGCCGGGGTGGGTGGAAATTCCTGATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGTCGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGCCGCCCAGCCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGTCTGCCAATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTACAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCAACCTTGCTATCAACAAAGCCAGAGTTATAGCAGCAGAGCAAGAAGCACCAGGTGGACCTGATTTGGACCTGCCCTTGCGAATTCTTCTACTTGGAAAGACTGGTGTGGGAAAGAGTGCCACGATAAACTCCATTTTTGATGAACCAAAGGTTGCTACCAATGCATTAGCTCCTGCTACTGAAAGGATAAGGAGGATTGATGGAACAATCAAAGGAATAAGAGTTACAGTTATCGACACACCTGGTTTGTT]

[+] EMBL CF307378             [ACGAGGCCCAAATCCAACCAACTCCCTCCGACACCATCATCCGCATCCCCCTCGCCGCCGCCGCCGCCGCCGCGGGCTCCGAGCCTCCCACCAGGCCAGCCGGGGTGGGTGGAAATTCCTGATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGTCGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGCCGCCCAGCCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGTCTGCCAATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTACAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCAACCTTGCTATCAACAAAGCCAGAGTTATAGCAGCAGA                                                                                                                                                                                                                     ]
[+] EMBL CB636643             [                                                 CCTCGCCGCCGCCGCCGCCGCCGCGGGCTCCGAGCCTCCCACCAGGCCAGCCGGGGTGGGTGGAAATTCCTGATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGTCGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGCCGCCCAGCCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGTCTGCCAATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTACAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCAACCTTGCTATCAACAAAGCCAGAGTTATAGCAGCAGAGCAAGAAGCACCAGGTGGACCTGATTTGGACCTGCCCTTGCGAATTCTTCTACTTGGAAAGACTGGTGTGGGAAAGAGTGCCACGATAAACTCC                                                                                                                       ]
[+] EMBL CB639835             [                                                                                                                                                                                                                                GCCCAGCCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGTCTGCCAATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTACAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCAACCTTGCTATCAACAAAGCCAGAGTTATAGCAGCAGAGCAAGAAGCACCAGGTGGACCTGATTTGGACCTGCCCTTGCGAATTCTTCTACTTGGAAAGACTGGTGTGGGAAAGAGTGCCACGATAAACTCCATTTTTGATGAACCAAAGGTTGCTACCAATGCATTAGCTCCTGCTACTGAAAGGATAAGGAGGATTGATGGAACAATCAAAGGAATAAGAGTTACAGTTATCGACACACCTGGTTTGTT]




>consensus_6987#0
ACGAGGCCCAAATCCAACCAACTCCCTCCGACACCATCATCCGCATCCCCCTCGCCGCCG
CCGCCGCCGCCGCGGGCTCCGAGCCTCCCACCAGGCCAGCCGGGGTGGGTGGAAATTCCT
GATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGT
CGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGCCGCCCAGCCCGGGGGCG
ATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGTCTGCCAATAGATTTCCAT
CTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATC
ATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGC
GGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTACA
GATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCAACCTTG
CTATCAACAAAGCCAGAGTTATAGCAGCAGAGCAAGAAGCACCAGGTGGACCTGATTTGG
ACCTGCCCTTGCGAATTCTTCTACTTGGAAAGACTGGTGTGGGAAAGAGTGCCACGATAA
ACTCCATTTTTGATGAACCAAAGGTTGCTACCAATGCATTAGCTCCTGCTACTGAAAGGA
TAAGGAGGATTGATGGAACAATCAAAGGAATAAGAGTTACAGTTATCGACACACCTGGTT
TGTT

consensusID : consensus_6987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [ATCCCCCTCGCCGCCGCCGCCGCCGCCGCGGGCTACGACCCTCCCACCAAGCCATCCGGGGTGGGTGGAAATTCCTGATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGTCGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGTTTTTTTTTTCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGCCCCCCCATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTTCAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCA]

[+] EMBL CB641302             [ATCCCCCTCGCCGCCGCCGCCGCCGCCGCGGGCTACGACCCTCCCACCAAGCCATCCGGGGTGGGTGGAAATTCCTGATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGTCGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGTTTTTTTTTTCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGCCCCCCCATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTTCAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCA]




>consensus_6987#1
ATCCCCCTCGCCGCCGCCGCCGCCGCCGCGGGCTACGACCCTCCCACCAAGCCATCCGGG
GTGGGTGGAAATTCCTGATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTC
GGCTCGTCGGTGCTGTCGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGTT
TTTTTTTTCCGGGGGCGATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGCC
CCCCCATAGATTTCCATCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCC
ATCTTATGAACCAGATCATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCT
TCAAATTAAGTTCCTGCGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGT
CGCACAGGTACTGTTCAGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTC
CAAGAGAACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6987#0      ACGAGGCCCAAATCCAACCAACTCCCTCCGACACCATCATCCGCATCCCCCTCGCCGCCG 60
consensus_6987#1      --------------------------------------------ATCCCCCTCGCCGCCG 16
                                                                  ****************

consensus_6987#0      CCGCCGCCGCCGCGGGCTCCGAGCCTCCCACCAGGCCAGCCGGGGTGGGTGGAAATTCCT 120
consensus_6987#1      CCGCCGCCGCCGCGGGCTACGACCCTCCCACCAAGCCATCCGGGGTGGGTGGAAATTCCT 76
                      ****************** *** ********** **** *********************

consensus_6987#0      GATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGT 180
consensus_6987#1      GATTGGTGATGATGAGCTTCAGGGACTGGATCTCGTACCGGCTCGGCTCGTCGGTGCTGT 136
                      ************************************************************

consensus_6987#0      CGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGCCGCCCAGC-CCGGGGGC 239
consensus_6987#1      CGGCGAGGCCCTTCTCGCTCTCCGCCCACCACGACGGCGCCGTTTTTTTTTTCCGGGGGC 196
                      ******************************************          ********

consensus_6987#0      GATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGTCTGCCAATAGATTTCCA 299
consensus_6987#1      GATGGGGATGGCGTGATGCAAAATGAGATTGTAGAAACTGTGCCCCCCCATAGATTTCCA 256
                      ****************************************** *  ** ***********

consensus_6987#0      TCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGAT 359
consensus_6987#1      TCTAATGATATCCGCGCATCAGATTCAGAGGTCACATCCAGTCCATCTTATGAACCAGAT 316
                      ************************************************************

consensus_6987#0      CATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTG 419
consensus_6987#1      CATGATAGCACAAAGTCAGATCCACTAAAGCATGTTGAGGCTCTTCAAATTAAGTTCCTG 376
                      ************************************************************

consensus_6987#0      CGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTAC 479
consensus_6987#1      CGGCTTGTGCACAGAACTGGAGTGCCTCCCACTACTGATGTTGTCGCACAGGTACTGTTC 436
                      ********************************************************** *

consensus_6987#0      AGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCAACCTT 539
consensus_6987#1      AGATTGCACCTTGCCAACTTGATTAAAGCTGGCGAATCAGATTCCAAGAGAACCA----- 491
                      *******************************************************     

consensus_6987#0      GCTATCAACAAAGCCAGAGTTATAGCAGCAGAGCAAGAAGCACCAGGTGGACCTGATTTG 599
consensus_6987#1      ------------------------------------------------------------
                                                                                  

consensus_6987#0      GACCTGCCCTTGCGAATTCTTCTACTTGGAAAGACTGGTGTGGGAAAGAGTGCCACGATA 659
consensus_6987#1      ------------------------------------------------------------
                                                                                  

consensus_6987#0      AACTCCATTTTTGATGAACCAAAGGTTGCTACCAATGCATTAGCTCCTGCTACTGAAAGG 719
consensus_6987#1      ------------------------------------------------------------
                                                                                  

consensus_6987#0      ATAAGGAGGATTGATGGAACAATCAAAGGAATAAGAGTTACAGTTATCGACACACCTGGT 779
consensus_6987#1      ------------------------------------------------------------
                                                                                  

consensus_6987#0      TTGTT 784
consensus_6987#1      -----