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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1181 fasta sequence
[AATCGTTGGAGAAGCAAAAGCGCACGGCACGAGGGACGCCCAATCCTCCGTGTCCGTTGGCTCAACTCGACCAAACAACCGCCTTTTTTTTAGTCTCCACTCTCTCCACTTCCCCCCCTCCATTGCCGCCCCGTTTCTCTCTCTGATCGGCAAAAAAGTGGATGCTCCGGCTGCTCGACCGCCATGGTGAGGTCTCTCGACAGCTACCCCTCCATCAAAGATGTCACCTACAGCTGCGGATACTGCGGGTACGCGCTGAACCTGAGCTCGTCGACGCGGAACACGGCGAACATCGGGTCCAAGTACGGGAAGCAGATCAAGAAGGGGGTCGTCTCCTTCTTCGCGGTGGACGAGAGCCGGTTCACGCAGGCCGACGAGGTCACCTGCGTGCCCTACTTCCACTCGCGGCGCTCCTGGGGGCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCCGCATCGGCAGCGCCTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCTGCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAAGATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACGATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAATTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGTGAGCTTTTGGAAGGGTTTGATACCATCATGATCTTGAGTCACCTTTGCTGTCTGTAGTAGACTAGTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATTTGTTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTTTACTGGTATGTCTTAAGTTTCTCTACACGGATTCTTCATTAGTCTTCTAAGAAAGCATGGGTTGTTGCATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTATAGTCTTTTGGTTTTCCAGAAATAGGCATGTATCTTCAGTTTTGTTAAGCTGATA]
[+] EMBL AK106052 [AATCGTTGGAGAAGCAAAAGCGCACGGCACGAGGGACGCCCAATCCTCCGTGTCCGTTGGCTCAACTCGACCAAACAACCGCCTTTTTTTTAGTCTCCACTCTCTCCACTTCCCCCCCTCCATTGCCGCCCCGTTTCTCTCTCTGATCGGCAAAAAAGTGGATGCTCCGGCTGCTCGACCGCCATGGTGAGGTCTCTCGACAGCTACCCCTCCATCAAAGATGTCACCTACAGCTGCGGATACTGCGGGTACGCGCTGAACCTGAGCTCGTCGACGCGGAACACGGCGAACATCGGGTCCAAGTACGGGAAGCAGATCAAGAAGGGGGTCGTCTCCTTCTTCGCGGTGGACGAGAGCCGGTTCACGCAGGCCGACGAGGTCACCTGCGTGCCCTACTTCCACTCGCGGCGCTCCTGGGGGCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCCGCATCGGCAGCGCCTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCTGCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAAGATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACGATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAATTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGTGAGCTTTTGGAAGGGTTTGATACCATCATGATCTTGAGTCACCTTTGCTGTCTGTAGTAGACTAGTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATTTGTTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGC ]
[+] EMBL AK072813 [ CCCGTTTCTCTCTCTGATCGGCAAAAAAGTGGATGCTCCGGCTGCTCGACCGCCATGGTGAGGTCTCTCGACAGCTACCCCTCCATCAAAGATGTCACCTACAGCTGCGGATACTGCGGGTACGCGCTGAACCTGAGCTCGTCGACGCGGAACACGGCGAACATCGGGTCCAAGTACGGGAAGCAGATCAAGAAGGGGGTCGTCTCCTTCTTCGCGGTGGACGAGAGCCGGTTCACGCAGGCCGACGAGGTCACCTGCGTGCCCTACTTCCACTCGCGGCGCTCCTGGGGGCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCCGCATCGGCAGCGCCTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCTGCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAAGATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACGATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAATTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGTGAGCTTTTGGAAGGGTTTGATACCATCATGATCTTGAGTCACCTTTGCTGTCTGTAGTAGACTAGTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATCTGTTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTTTACTGGTATGTCTTAAGTTTCTCTACACGGATTCTTCATTAGTCTTCTAAGAAAGCATGGGTTGTTGCATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTATAGTCTTTTGGTTTTCCAGAAATAGGCATGTATCTTCAGTTTTGTTAAGCTGATA]
consensusID : consensus_6994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[CCCTACTTTCCACTCGCGGCGCTCCTGGGGGCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCTGCATCGGCAGCGCCTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCTGCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAAGATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACGATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAATTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGTGAGCTTTTGGAAGGGTTTGATACCATCATGATCTTGAGTCACCTTTGCTGTCTGTAGTAGACTAGTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATCTGTTAATATTGGAAAATGACAAGTTTGCTGTAAAAAGAAAAAAAAAAAAA]
[+] EMBL BI805241 [CCCTACTTTCCACTCGCGGCGCTCCTGGGGGCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCTGCATCGGCAGCGCCTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCTGCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAAGATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACGATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAATTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGTGAGCTTTTGGAAGGGTTTGATACCATCATGATCTTGAGTCACCTTTGCTGTCTGTAGTAGACTAGTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATCTGTTAATATTGGAAAATGACAAGTTTGCTGTAAAAAGAAAAAAAAAAAAA]
consensusID : consensus_6994#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence
[GTAGACAAGTAGTGCTTNTCTTTTCTTCNGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATCTGTTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTTTACTGGTATGTCTTAAGTTTCTCTACACGGATTCTTCATTAGTCTTCTAAGAAAGCATGGGTTGTTGCATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTACAAAAAAAAAAAAAAAAA]
[+] EMBL AU108412 [GTAGACAAGTAGTGCTTNTCTTTTCTTCNGTGAATTGGTGGGAGTATACACTGGTTGTTAATTTTTGGATCTGTTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTTTACTGGTATGTCTTAAGTTTCTCTACACGGATTCTTCATTAGTCTTCTAAGAAAGCATGGGTTGTTGCATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTACAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6994#0 AATCGTTGGAGAAGCAAAAGCGCACGGCACGAGGGACGCCCAATCCTCCGTGTCCGTTGG 60
consensus_6994#1 ------------------------------------------------------------
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 CTCAACTCGACCAAACAACCGCCTTTTTTTTAGTCTCCACTCTCTCCACTTCCCCCCCTC 120
consensus_6994#1 ------------------------------------------------------------
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 CATTGCCGCCCCGTTTCTCTCTCTGATCGGCAAAAAAGTGGATGCTCCGGCTGCTCGACC 180
consensus_6994#1 ------------------------------------------------------------
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 GCCATGGTGAGGTCTCTCGACAGCTACCCCTCCATCAAAGATGTCACCTACAGCTGCGGA 240
consensus_6994#1 ------------------------------------------------------------
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 TACTGCGGGTACGCGCTGAACCTGAGCTCGTCGACGCGGAACACGGCGAACATCGGGTCC 300
consensus_6994#1 ------------------------------------------------------------
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 AAGTACGGGAAGCAGATCAAGAAGGGGGTCGTCTCCTTCTTCGCGGTGGACGAGAGCCGG 360
consensus_6994#1 ------------------------------------------------------------
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 TTCACGCAGGCCGACGAGGTCACCTGCGTGCCCTACTT-CCACTCGCGGCGCTCCTGGGG 419
consensus_6994#1 ------------------------------CCCTACTTTCCACTCGCGGCGCTCCTGGGG 30
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 GCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCCGCATCGGCAGCGC 479
consensus_6994#1 GCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGGCGGCTGCATCGGCAGCGC 90
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 CTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCT 539
consensus_6994#1 CTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCT 150
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 GCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAA 599
consensus_6994#1 GCGCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAA 210
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 GATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACG 659
consensus_6994#1 GATCAACGCGCTGCAGCCCTCGTCGGACGATTCTGATGCTGTTGCCTTTACCCTATGACG 270
consensus_6994#2 ----------------------------------------------GTAGACAAGTAGTG 14
* * * *
consensus_6994#0 ATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAA 719
consensus_6994#1 ATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAA 330
consensus_6994#2 CTTNTCTTTTCTTCNGTGAATTGGTGGGA---GTATACACTGGTTGTT--AATTTTTGGA 69
** * * * * ** * * * * * * * * * ** * * * ** * *
consensus_6994#0 TTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGT 779
consensus_6994#1 TTCGCATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGT 390
consensus_6994#2 TCTG--TTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTT 127
* * ** * ** **** * * **** ** * * * ** *
consensus_6994#0 GAGCTTTTGGAAGGGTTTGATACCA-TCATGATCTTGAGTCACCTTTGCTGTCTGTAGTA 838
consensus_6994#1 GAGCTTTTGGAAGGGTTTGATACCA-TCATGATCTTGAGTCACCTTTGCTGTCTGTAGTA 449
consensus_6994#2 GTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTTTACTGGTATG 187
* * * * * * ** *** * ** ******** *** * *** *
consensus_6994#0 GACTA-GTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAAT 897
consensus_6994#1 GACTA-GTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATACACTGGTTGTTAAT 508
consensus_6994#2 TCTTAAGTTTCTCTACACGGATTCTTCATTAGTCT-TCTAAGAAAGCATGGGTTGTTG-- 244
** ** ** * * * * * * * ** * ** *******
consensus_6994#0 TTTTGGATTTGTTAATATTGGAAAAT-----GACAAAGTTTGCTGTATGTGGCTTGGCCC 952
consensus_6994#1 TTTTGGATCTGTTAATATTGGAAAAT-----GACAA-GTTTGCTGTAAAAAGAAAAAAAA 562
consensus_6994#2 CATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTACAAAAAAAAAAAA 304
*** * **** * **** * ** *** **
consensus_6994#0 TATTGAGTTTGTACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTT 1012
consensus_6994#1 AAAAA------------------------------------------------------- 567
consensus_6994#2 AAAAA------------------------------------------------------- 309
*
consensus_6994#0 TACTGGTATGTCTTAAGTTTCTCTACACGGATTCTTCATTAGTCTTCTAAGAAAGCATGG 1072
consensus_6994#1 ------------------------------------------------------------
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 GTTGTTGCATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAATTATAGTCT 1132
consensus_6994#1 ------------------------------------------------------------
consensus_6994#2 ------------------------------------------------------------
consensus_6994#0 TTTGGTTTTCCAGAAATAGGCATGTATCTTCAGTTTTGTTAAGCTGATA 1181
consensus_6994#1 -------------------------------------------------
consensus_6994#2 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||