These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence [CCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTTGTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGGGCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGCTGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCAAGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGATGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGTCGCGCCGGACGCGGAGACGATCGGAATCCTCACCAGCGCCGCCAACCAGAAAGGGGTGGAGGTGGTGGCGAAGGTGTACTGGGGCGAGCCGGCGAAGAAGCTGACGGAGGCGGCGCAGGGGATTCCCCTGCACTGGCTCGTCGTCGGGAACAGAGGCCTCGGCGCCGTCAAGAGGGTTCTGATGGGGAGCGTGAGCACGTACGTCGCCAACCACGCCACCTGCCCCGTCACCGTCGTCAGGGAGAACCTGCCGCCTCCGCCGCCGCCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGCTACTACTGATGGCTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGGACTGTCTCTGCTTGACTGCT] [+] EMBL AK063611 [CCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTTGTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGGGCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGCTGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCAAGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGATGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGTCGCGCCGGACGCGGAGACGATCGGAATCCTCACCAGCGCCGCCAACCAGAAAGGGGTGGAGGTGGTGGCGAAGGTGTACTGGGGCGAGCCGGCGAAGAAGCTGACGGAGGCGGCGCAGGGGATTCCCCTGCACTGGCTCGTCGTCGGGAACAGAGGCCTCGGCGCCGTCAAGAGGGTTCTGATGGGGAGCGTGAGCACGTACGTCGCCAACCACGCCACCTGCCCCGTCACCGTCGTCAGGGAGAACCTGCCGCCTCCGCCGCCGCCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGCTACTACTGATGGCTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGGACTGTCTCTGCTTGACTGCT] consensusID : consensus_7#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [CAACGACACCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTTGTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGGGCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGCTGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCAAGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGATGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGCTACTACTGATGGCTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGGACTGTCTCTGCTTGACTGCT] [+] EMBL AK063609 [CAACGACACCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTTGTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGGGCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGCTGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCAAGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGATGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGCTACTACTGATGGCTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGGACTGTCTCTGCTTGACTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7#0 --------CCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTT 52 consensus_7#1 CAACGACACCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTT 60 **************************************************** consensus_7#0 GTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGG 112 consensus_7#1 GTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGG 120 ************************************************************ consensus_7#0 GCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGC 172 consensus_7#1 GCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGC 180 ************************************************************ consensus_7#0 TGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCA 232 consensus_7#1 TGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCA 240 ************************************************************ consensus_7#0 AGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGA 292 consensus_7#1 AGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGA 300 ************************************************************ consensus_7#0 TGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGTCGCGCCGG 352 consensus_7#1 TGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGCCGCAGCCA 360 *************************************************** *** * consensus_7#0 ACGCGGAGACGATCGGAATCCTCACCAGC-GCCGCCAACCAGAAAGGGGTGGAGGTGGTG 411 consensus_7#1 CCGC--AGCCCGTCGCAACGGCGGCGAGCTACTACTGATGGCTGATCAGCTGCGAT--TT 416 *** ** * *** ** * *** * * * * * * * * * consensus_7#0 GCGAAGGTGTACTGGGGCGAGCCGGCGAAGAAGCTGACG---GAGGCGGCGCAGGGGATT 468 consensus_7#1 CCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGGACT 476 * * ** * ** *** * * * ** * ** ** * **** * consensus_7#0 CCCCTGCACTGGCTCGTCGTCGGGAACAGAGGCCTCGGCGCCGTCAAGAGGGTTCTGATG 528 consensus_7#1 GTCTCTGCTTGACTGCT------------------------------------------- 493 * ** ** * consensus_7#0 GGGAGCGTGAGCACGTACGTCGCCAACCACGCCACCTGCCCCGTCACCGTCGTCAGGGAG 588 consensus_7#1 ------------------------------------------------------------ consensus_7#0 AACCTGCCGCCTCCGCCGCCGCCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGC 648 consensus_7#1 ------------------------------------------------------------ consensus_7#0 TACTACTGATGGCTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTC 708 consensus_7#1 ------------------------------------------------------------ consensus_7#0 GGTTGCTGTGTGACTGGGAGTCTGGGACTGTCTCTGCTTGACTGCT 754 consensus_7#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||