cluster # 70

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Oryza sativa
cluster # 70 cluster # 70 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_70#0 length = 1797 sequences # 1

consensus_70#1 length = 401 sequences # 1

consensusID : consensus_70#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1797
fasta sequence

                              [GCAAAAACCCCACCTCTGGACTTTGGCCACCTCTCTCCTCCCCCAATTCCACCACTAGCCCTCGTGTCCCCGGCGCGGCGGCGGCGGCAGCGATGCCTGACCAGCGGCCAAAGCGGCCGTCCGACTCGGTCGCCGCCGCCTCGCCGGCGGCGAAGCGCGCCCGCGACCCGTCCGCGCCGGCGTTCCCCACCTACAGGGACGCCCCCGACCTGCCCCCGAAGATCCGTCTCCTATGCGAGATCCTGGCGTCCTCGGCACCCGACGTCGACGCGGCGCTCGACGACGCCGACGTCCGCGTCACCTCCTCCGACGTCGAGCAGGTGCTCCGGTTCTCCTACGCCCACCCGCGCGCCGCCGTCGCCTTCTTCCGATGGGCGGGGCACCGGCACCTCCGCCACCAGCACTCCCCCTACTCGTGGAACCTCGTCGTCGACCTCCTCGGCAAGAACCGCCTGTTCGAGCCCATGTGGGACACCGTCTCCTCCATGCGGACCCAGGGCCTGCTCTCCCTGGCCACCTTCGCCTCCGTGTTCTCCTCCCTGGCGGCCAACCCGGCCAGCTCCCCACTCAGGGCGTTCGTGGAGCTGCCGATGTACGGCATGGACCGCGACACGCCGGCGCTCAACTCCCTCCTCTCCGCGCTCTGCCGCGCCTCCCGCCTGGACGACGCCCGCGCCGCGATCCCCGTGGCGCGCGCCGAGGCCGGCACCCGCCCCGACGCCGACTCCTACGCCATCCTTCTGGAGGGCTGCGAGGCTGCCGGCGACCCTCACGTTGCACGCGAGGTGTTCGACGAGATGCGGCACGTCATCGGATTCGATCCTGCCAATGTTCCTGCCTATGATTCTTTCCTCACTACACTGATTTCAAGTGGTTCCTCCACAGCGTTAATGGATGCGATGGACTATCTTGCTATCTTGCACCGGCAGAGGTGCTCACCTGGGGAGAAGTTCTTCCGCGCCGCACTGGCCGCACACCTCAAGGCGCGTGAATTGCGCGGCGCGGTGGTGCTCTGGAACGACTTTGTCGTAAGGCGGGGACTCATCCCAGATAAGGAAATGTATAGCACAATGATCATGCTGCAGGGCACTCTTGGGCATCCTGAGGTGATTGTTGAGTACCTTGATGAGATGACCTTTGATGGAGTGTTTCCAGATGCGGACACATACAATATGGTTTTCCAGTTCTTGCTGAAGGGGAGGAAACTCCGGGAGGCGTCGGCAATATTTAGTGAGATGGTCAAGAACGAGTTCTGGCCCAATGAGGCAAATTGTTCGCTCGCGCTTCGTATGTTCTTGGATACACGAGACTGGGATTCAGGGATCAAGTTGTGGAAATGCATGGTGGAGAATGGGCTTCCACCATTGGAGGAGAGTGGGAACATGCTCGTATCAAAGCTAAAGGATGAGAGGTTACCCGAGGCATGTAAATATGCAGAAGACATGATTGATCGATGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTCTGATGAAGGTTTATAAAGGACATATCCACGATCACCTACTTAGAAAATGGAAGGCGCACTAGGTATTTTTACCTCTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTGCCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGTTGCAACTGCAACTATAGGAACATTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAATGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTT]

[+] EMBL AK070234             [GCAAAAACCCCACCTCTGGACTTTGGCCACCTCTCTCCTCCCCCAATTCCACCACTAGCCCTCGTGTCCCCGGCGCGGCGGCGGCGGCAGCGATGCCTGACCAGCGGCCAAAGCGGCCGTCCGACTCGGTCGCCGCCGCCTCGCCGGCGGCGAAGCGCGCCCGCGACCCGTCCGCGCCGGCGTTCCCCACCTACAGGGACGCCCCCGACCTGCCCCCGAAGATCCGTCTCCTATGCGAGATCCTGGCGTCCTCGGCACCCGACGTCGACGCGGCGCTCGACGACGCCGACGTCCGCGTCACCTCCTCCGACGTCGAGCAGGTGCTCCGGTTCTCCTACGCCCACCCGCGCGCCGCCGTCGCCTTCTTCCGATGGGCGGGGCACCGGCACCTCCGCCACCAGCACTCCCCCTACTCGTGGAACCTCGTCGTCGACCTCCTCGGCAAGAACCGCCTGTTCGAGCCCATGTGGGACACCGTCTCCTCCATGCGGACCCAGGGCCTGCTCTCCCTGGCCACCTTCGCCTCCGTGTTCTCCTCCCTGGCGGCCAACCCGGCCAGCTCCCCACTCAGGGCGTTCGTGGAGCTGCCGATGTACGGCATGGACCGCGACACGCCGGCGCTCAACTCCCTCCTCTCCGCGCTCTGCCGCGCCTCCCGCCTGGACGACGCCCGCGCCGCGATCCCCGTGGCGCGCGCCGAGGCCGGCACCCGCCCCGACGCCGACTCCTACGCCATCCTTCTGGAGGGCTGCGAGGCTGCCGGCGACCCTCACGTTGCACGCGAGGTGTTCGACGAGATGCGGCACGTCATCGGATTCGATCCTGCCAATGTTCCTGCCTATGATTCTTTCCTCACTACACTGATTTCAAGTGGTTCCTCCACAGCGTTAATGGATGCGATGGACTATCTTGCTATCTTGCACCGGCAGAGGTGCTCACCTGGGGAGAAGTTCTTCCGCGCCGCACTGGCCGCACACCTCAAGGCGCGTGAATTGCGCGGCGCGGTGGTGCTCTGGAACGACTTTGTCGTAAGGCGGGGACTCATCCCAGATAAGGAAATGTATAGCACAATGATCATGCTGCAGGGCACTCTTGGGCATCCTGAGGTGATTGTTGAGTACCTTGATGAGATGACCTTTGATGGAGTGTTTCCAGATGCGGACACATACAATATGGTTTTCCAGTTCTTGCTGAAGGGGAGGAAACTCCGGGAGGCGTCGGCAATATTTAGTGAGATGGTCAAGAACGAGTTCTGGCCCAATGAGGCAAATTGTTCGCTCGCGCTTCGTATGTTCTTGGATACACGAGACTGGGATTCAGGGATCAAGTTGTGGAAATGCATGGTGGAGAATGGGCTTCCACCATTGGAGGAGAGTGGGAACATGCTCGTATCAAAGCTAAAGGATGAGAGGTTACCCGAGGCATGTAAATATGCAGAAGACATGATTGATCGATGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTCTGATGAAGGTTTATAAAGGACATATCCACGATCACCTACTTAGAAAATGGAAGGCGCACTAGGTATTTTTACCTCTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTGCCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGTTGCAACTGCAACTATAGGAACATTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAATGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTT]




>consensus_70#0
GCAAAAACCCCACCTCTGGACTTTGGCCACCTCTCTCCTCCCCCAATTCCACCACTAGCC
CTCGTGTCCCCGGCGCGGCGGCGGCGGCAGCGATGCCTGACCAGCGGCCAAAGCGGCCGT
CCGACTCGGTCGCCGCCGCCTCGCCGGCGGCGAAGCGCGCCCGCGACCCGTCCGCGCCGG
CGTTCCCCACCTACAGGGACGCCCCCGACCTGCCCCCGAAGATCCGTCTCCTATGCGAGA
TCCTGGCGTCCTCGGCACCCGACGTCGACGCGGCGCTCGACGACGCCGACGTCCGCGTCA
CCTCCTCCGACGTCGAGCAGGTGCTCCGGTTCTCCTACGCCCACCCGCGCGCCGCCGTCG
CCTTCTTCCGATGGGCGGGGCACCGGCACCTCCGCCACCAGCACTCCCCCTACTCGTGGA
ACCTCGTCGTCGACCTCCTCGGCAAGAACCGCCTGTTCGAGCCCATGTGGGACACCGTCT
CCTCCATGCGGACCCAGGGCCTGCTCTCCCTGGCCACCTTCGCCTCCGTGTTCTCCTCCC
TGGCGGCCAACCCGGCCAGCTCCCCACTCAGGGCGTTCGTGGAGCTGCCGATGTACGGCA
TGGACCGCGACACGCCGGCGCTCAACTCCCTCCTCTCCGCGCTCTGCCGCGCCTCCCGCC
TGGACGACGCCCGCGCCGCGATCCCCGTGGCGCGCGCCGAGGCCGGCACCCGCCCCGACG
CCGACTCCTACGCCATCCTTCTGGAGGGCTGCGAGGCTGCCGGCGACCCTCACGTTGCAC
GCGAGGTGTTCGACGAGATGCGGCACGTCATCGGATTCGATCCTGCCAATGTTCCTGCCT
ATGATTCTTTCCTCACTACACTGATTTCAAGTGGTTCCTCCACAGCGTTAATGGATGCGA
TGGACTATCTTGCTATCTTGCACCGGCAGAGGTGCTCACCTGGGGAGAAGTTCTTCCGCG
CCGCACTGGCCGCACACCTCAAGGCGCGTGAATTGCGCGGCGCGGTGGTGCTCTGGAACG
ACTTTGTCGTAAGGCGGGGACTCATCCCAGATAAGGAAATGTATAGCACAATGATCATGC
TGCAGGGCACTCTTGGGCATCCTGAGGTGATTGTTGAGTACCTTGATGAGATGACCTTTG
ATGGAGTGTTTCCAGATGCGGACACATACAATATGGTTTTCCAGTTCTTGCTGAAGGGGA
GGAAACTCCGGGAGGCGTCGGCAATATTTAGTGAGATGGTCAAGAACGAGTTCTGGCCCA
ATGAGGCAAATTGTTCGCTCGCGCTTCGTATGTTCTTGGATACACGAGACTGGGATTCAG
GGATCAAGTTGTGGAAATGCATGGTGGAGAATGGGCTTCCACCATTGGAGGAGAGTGGGA
ACATGCTCGTATCAAAGCTAAAGGATGAGAGGTTACCCGAGGCATGTAAATATGCAGAAG
ACATGATTGATCGATGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTC
TGATGAAGGTTTATAAAGGACATATCCACGATCACCTACTTAGAAAATGGAAGGCGCACT
AGGTATTTTTACCTCTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTG
CCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGTTGCAACTGCAACTATAGGA
ACATTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAA
TGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTT

consensusID : consensus_70#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [AGAGGACGAGACAAGGGGGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTTTGATGAAGGTTTATAAAGGACATATCCCCGATCACCTACTTAGAAAATGGAAGGCGCCCTAGGTATTTTTACCTTTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTGCCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGCTGCAACTGCAACTATAGGAACCTTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAATGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTTTTTCTTTTGCATGCGTTTCTTGCGTAGAAAAAAAAAAAAAA]

[-] EMBL CA761281             [AGAGGACGAGACAAGGGGGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTTTGATGAAGGTTTATAAAGGACATATCCCCGATCACCTACTTAGAAAATGGAAGGCGCCCTAGGTATTTTTACCTTTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTGCCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGCTGCAACTGCAACTATAGGAACCTTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAATGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTTTTTCTTTTGCATGCGTTTCTTGCGTAGAAAAAAAAAAAAAA]




>consensus_70#1
AGAGGACGAGACAAGGGGGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAAT
GTTTGATGAAGGTTTATAAAGGACATATCCCCGATCACCTACTTAGAAAATGGAAGGCGC
CCTAGGTATTTTTACCTTTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATT
TTGCCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGCTGCAACTGCAACTATA
GGAACCTTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTA
CAATGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTT
TTTCTTTTGCATGCGTTTCTTGCGTAGAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_70#0      GCAAAAACCCCACCTCTGGACTTTGGCCACCTCTCTCCTCCCCCAATTCCACCACTAGCC 60
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      CTCGTGTCCCCGGCGCGGCGGCGGCGGCAGCGATGCCTGACCAGCGGCCAAAGCGGCCGT 120
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      CCGACTCGGTCGCCGCCGCCTCGCCGGCGGCGAAGCGCGCCCGCGACCCGTCCGCGCCGG 180
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      CGTTCCCCACCTACAGGGACGCCCCCGACCTGCCCCCGAAGATCCGTCTCCTATGCGAGA 240
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      TCCTGGCGTCCTCGGCACCCGACGTCGACGCGGCGCTCGACGACGCCGACGTCCGCGTCA 300
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      CCTCCTCCGACGTCGAGCAGGTGCTCCGGTTCTCCTACGCCCACCCGCGCGCCGCCGTCG 360
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      CCTTCTTCCGATGGGCGGGGCACCGGCACCTCCGCCACCAGCACTCCCCCTACTCGTGGA 420
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      ACCTCGTCGTCGACCTCCTCGGCAAGAACCGCCTGTTCGAGCCCATGTGGGACACCGTCT 480
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      CCTCCATGCGGACCCAGGGCCTGCTCTCCCTGGCCACCTTCGCCTCCGTGTTCTCCTCCC 540
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      TGGCGGCCAACCCGGCCAGCTCCCCACTCAGGGCGTTCGTGGAGCTGCCGATGTACGGCA 600
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      TGGACCGCGACACGCCGGCGCTCAACTCCCTCCTCTCCGCGCTCTGCCGCGCCTCCCGCC 660
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      TGGACGACGCCCGCGCCGCGATCCCCGTGGCGCGCGCCGAGGCCGGCACCCGCCCCGACG 720
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      CCGACTCCTACGCCATCCTTCTGGAGGGCTGCGAGGCTGCCGGCGACCCTCACGTTGCAC 780
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      GCGAGGTGTTCGACGAGATGCGGCACGTCATCGGATTCGATCCTGCCAATGTTCCTGCCT 840
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      ATGATTCTTTCCTCACTACACTGATTTCAAGTGGTTCCTCCACAGCGTTAATGGATGCGA 900
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      TGGACTATCTTGCTATCTTGCACCGGCAGAGGTGCTCACCTGGGGAGAAGTTCTTCCGCG 960
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      CCGCACTGGCCGCACACCTCAAGGCGCGTGAATTGCGCGGCGCGGTGGTGCTCTGGAACG 1020
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      ACTTTGTCGTAAGGCGGGGACTCATCCCAGATAAGGAAATGTATAGCACAATGATCATGC 1080
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      TGCAGGGCACTCTTGGGCATCCTGAGGTGATTGTTGAGTACCTTGATGAGATGACCTTTG 1140
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      ATGGAGTGTTTCCAGATGCGGACACATACAATATGGTTTTCCAGTTCTTGCTGAAGGGGA 1200
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      GGAAACTCCGGGAGGCGTCGGCAATATTTAGTGAGATGGTCAAGAACGAGTTCTGGCCCA 1260
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      ATGAGGCAAATTGTTCGCTCGCGCTTCGTATGTTCTTGGATACACGAGACTGGGATTCAG 1320
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      GGATCAAGTTGTGGAAATGCATGGTGGAGAATGGGCTTCCACCATTGGAGGAGAGTGGGA 1380
consensus_70#1      ------------------------------------------------------------
                                                                                

consensus_70#0      ACATGCTCGTATCAAAGCTAAAGGATGAGAGGTTACCCGAGGCATGTAAATATGCAGAAG 1440
consensus_70#1      -------------------------------------------------------AGAGG 5
                                                                           *** *

consensus_70#0      ACATGATTGATCGATGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTC 1500
consensus_70#1      ACGAGACAAG--GGGGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTT 63
                    **  **      *  ******************************************** 

consensus_70#0      TGATGAAGGTTTATAAAGGACATATCCACGATCACCTACTTAGAAAATGGAAGGCGCACT 1560
consensus_70#1      TGATGAAGGTTTATAAAGGACATATCCCCGATCACCTACTTAGAAAATGGAAGGCGCCCT 123
                    *************************** ***************************** **

consensus_70#0      AGGTATTTTTACCTCTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTG 1620
consensus_70#1      AGGTATTTTTACCTTTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTG 183
                    ************** *********************************************

consensus_70#0      CCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGTTGCAACTGCAACTATAGGA 1680
consensus_70#1      CCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGCTGCAACTGCAACTATAGGA 243
                    **************************************** *******************

consensus_70#0      ACATTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAA 1740
consensus_70#1      ACCTTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAA 303
                    ** *********************************************************

consensus_70#0      TGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTT--- 1797
consensus_70#1      TGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTTTTT 363
                    *********************************************************   

consensus_70#0      --------------------------------------
consensus_70#1      CTTTTGCATGCGTTTCTTGCGTAGAAAAAAAAAAAAAA 401