These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_70#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1797 fasta sequence [GCAAAAACCCCACCTCTGGACTTTGGCCACCTCTCTCCTCCCCCAATTCCACCACTAGCCCTCGTGTCCCCGGCGCGGCGGCGGCGGCAGCGATGCCTGACCAGCGGCCAAAGCGGCCGTCCGACTCGGTCGCCGCCGCCTCGCCGGCGGCGAAGCGCGCCCGCGACCCGTCCGCGCCGGCGTTCCCCACCTACAGGGACGCCCCCGACCTGCCCCCGAAGATCCGTCTCCTATGCGAGATCCTGGCGTCCTCGGCACCCGACGTCGACGCGGCGCTCGACGACGCCGACGTCCGCGTCACCTCCTCCGACGTCGAGCAGGTGCTCCGGTTCTCCTACGCCCACCCGCGCGCCGCCGTCGCCTTCTTCCGATGGGCGGGGCACCGGCACCTCCGCCACCAGCACTCCCCCTACTCGTGGAACCTCGTCGTCGACCTCCTCGGCAAGAACCGCCTGTTCGAGCCCATGTGGGACACCGTCTCCTCCATGCGGACCCAGGGCCTGCTCTCCCTGGCCACCTTCGCCTCCGTGTTCTCCTCCCTGGCGGCCAACCCGGCCAGCTCCCCACTCAGGGCGTTCGTGGAGCTGCCGATGTACGGCATGGACCGCGACACGCCGGCGCTCAACTCCCTCCTCTCCGCGCTCTGCCGCGCCTCCCGCCTGGACGACGCCCGCGCCGCGATCCCCGTGGCGCGCGCCGAGGCCGGCACCCGCCCCGACGCCGACTCCTACGCCATCCTTCTGGAGGGCTGCGAGGCTGCCGGCGACCCTCACGTTGCACGCGAGGTGTTCGACGAGATGCGGCACGTCATCGGATTCGATCCTGCCAATGTTCCTGCCTATGATTCTTTCCTCACTACACTGATTTCAAGTGGTTCCTCCACAGCGTTAATGGATGCGATGGACTATCTTGCTATCTTGCACCGGCAGAGGTGCTCACCTGGGGAGAAGTTCTTCCGCGCCGCACTGGCCGCACACCTCAAGGCGCGTGAATTGCGCGGCGCGGTGGTGCTCTGGAACGACTTTGTCGTAAGGCGGGGACTCATCCCAGATAAGGAAATGTATAGCACAATGATCATGCTGCAGGGCACTCTTGGGCATCCTGAGGTGATTGTTGAGTACCTTGATGAGATGACCTTTGATGGAGTGTTTCCAGATGCGGACACATACAATATGGTTTTCCAGTTCTTGCTGAAGGGGAGGAAACTCCGGGAGGCGTCGGCAATATTTAGTGAGATGGTCAAGAACGAGTTCTGGCCCAATGAGGCAAATTGTTCGCTCGCGCTTCGTATGTTCTTGGATACACGAGACTGGGATTCAGGGATCAAGTTGTGGAAATGCATGGTGGAGAATGGGCTTCCACCATTGGAGGAGAGTGGGAACATGCTCGTATCAAAGCTAAAGGATGAGAGGTTACCCGAGGCATGTAAATATGCAGAAGACATGATTGATCGATGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTCTGATGAAGGTTTATAAAGGACATATCCACGATCACCTACTTAGAAAATGGAAGGCGCACTAGGTATTTTTACCTCTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTGCCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGTTGCAACTGCAACTATAGGAACATTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAATGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTT] [+] EMBL AK070234 [GCAAAAACCCCACCTCTGGACTTTGGCCACCTCTCTCCTCCCCCAATTCCACCACTAGCCCTCGTGTCCCCGGCGCGGCGGCGGCGGCAGCGATGCCTGACCAGCGGCCAAAGCGGCCGTCCGACTCGGTCGCCGCCGCCTCGCCGGCGGCGAAGCGCGCCCGCGACCCGTCCGCGCCGGCGTTCCCCACCTACAGGGACGCCCCCGACCTGCCCCCGAAGATCCGTCTCCTATGCGAGATCCTGGCGTCCTCGGCACCCGACGTCGACGCGGCGCTCGACGACGCCGACGTCCGCGTCACCTCCTCCGACGTCGAGCAGGTGCTCCGGTTCTCCTACGCCCACCCGCGCGCCGCCGTCGCCTTCTTCCGATGGGCGGGGCACCGGCACCTCCGCCACCAGCACTCCCCCTACTCGTGGAACCTCGTCGTCGACCTCCTCGGCAAGAACCGCCTGTTCGAGCCCATGTGGGACACCGTCTCCTCCATGCGGACCCAGGGCCTGCTCTCCCTGGCCACCTTCGCCTCCGTGTTCTCCTCCCTGGCGGCCAACCCGGCCAGCTCCCCACTCAGGGCGTTCGTGGAGCTGCCGATGTACGGCATGGACCGCGACACGCCGGCGCTCAACTCCCTCCTCTCCGCGCTCTGCCGCGCCTCCCGCCTGGACGACGCCCGCGCCGCGATCCCCGTGGCGCGCGCCGAGGCCGGCACCCGCCCCGACGCCGACTCCTACGCCATCCTTCTGGAGGGCTGCGAGGCTGCCGGCGACCCTCACGTTGCACGCGAGGTGTTCGACGAGATGCGGCACGTCATCGGATTCGATCCTGCCAATGTTCCTGCCTATGATTCTTTCCTCACTACACTGATTTCAAGTGGTTCCTCCACAGCGTTAATGGATGCGATGGACTATCTTGCTATCTTGCACCGGCAGAGGTGCTCACCTGGGGAGAAGTTCTTCCGCGCCGCACTGGCCGCACACCTCAAGGCGCGTGAATTGCGCGGCGCGGTGGTGCTCTGGAACGACTTTGTCGTAAGGCGGGGACTCATCCCAGATAAGGAAATGTATAGCACAATGATCATGCTGCAGGGCACTCTTGGGCATCCTGAGGTGATTGTTGAGTACCTTGATGAGATGACCTTTGATGGAGTGTTTCCAGATGCGGACACATACAATATGGTTTTCCAGTTCTTGCTGAAGGGGAGGAAACTCCGGGAGGCGTCGGCAATATTTAGTGAGATGGTCAAGAACGAGTTCTGGCCCAATGAGGCAAATTGTTCGCTCGCGCTTCGTATGTTCTTGGATACACGAGACTGGGATTCAGGGATCAAGTTGTGGAAATGCATGGTGGAGAATGGGCTTCCACCATTGGAGGAGAGTGGGAACATGCTCGTATCAAAGCTAAAGGATGAGAGGTTACCCGAGGCATGTAAATATGCAGAAGACATGATTGATCGATGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTCTGATGAAGGTTTATAAAGGACATATCCACGATCACCTACTTAGAAAATGGAAGGCGCACTAGGTATTTTTACCTCTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTGCCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGTTGCAACTGCAACTATAGGAACATTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAATGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTT] consensusID : consensus_70#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [AGAGGACGAGACAAGGGGGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTTTGATGAAGGTTTATAAAGGACATATCCCCGATCACCTACTTAGAAAATGGAAGGCGCCCTAGGTATTTTTACCTTTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTGCCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGCTGCAACTGCAACTATAGGAACCTTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAATGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTTTTTCTTTTGCATGCGTTTCTTGCGTAGAAAAAAAAAAAAAA] [-] EMBL CA761281 [AGAGGACGAGACAAGGGGGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTTTGATGAAGGTTTATAAAGGACATATCCCCGATCACCTACTTAGAAAATGGAAGGCGCCCTAGGTATTTTTACCTTTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTGCCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGCTGCAACTGCAACTATAGGAACCTTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAATGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTTTTTCTTTTGCATGCGTTTCTTGCGTAGAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_70#0 GCAAAAACCCCACCTCTGGACTTTGGCCACCTCTCTCCTCCCCCAATTCCACCACTAGCC 60 consensus_70#1 ------------------------------------------------------------ consensus_70#0 CTCGTGTCCCCGGCGCGGCGGCGGCGGCAGCGATGCCTGACCAGCGGCCAAAGCGGCCGT 120 consensus_70#1 ------------------------------------------------------------ consensus_70#0 CCGACTCGGTCGCCGCCGCCTCGCCGGCGGCGAAGCGCGCCCGCGACCCGTCCGCGCCGG 180 consensus_70#1 ------------------------------------------------------------ consensus_70#0 CGTTCCCCACCTACAGGGACGCCCCCGACCTGCCCCCGAAGATCCGTCTCCTATGCGAGA 240 consensus_70#1 ------------------------------------------------------------ consensus_70#0 TCCTGGCGTCCTCGGCACCCGACGTCGACGCGGCGCTCGACGACGCCGACGTCCGCGTCA 300 consensus_70#1 ------------------------------------------------------------ consensus_70#0 CCTCCTCCGACGTCGAGCAGGTGCTCCGGTTCTCCTACGCCCACCCGCGCGCCGCCGTCG 360 consensus_70#1 ------------------------------------------------------------ consensus_70#0 CCTTCTTCCGATGGGCGGGGCACCGGCACCTCCGCCACCAGCACTCCCCCTACTCGTGGA 420 consensus_70#1 ------------------------------------------------------------ consensus_70#0 ACCTCGTCGTCGACCTCCTCGGCAAGAACCGCCTGTTCGAGCCCATGTGGGACACCGTCT 480 consensus_70#1 ------------------------------------------------------------ consensus_70#0 CCTCCATGCGGACCCAGGGCCTGCTCTCCCTGGCCACCTTCGCCTCCGTGTTCTCCTCCC 540 consensus_70#1 ------------------------------------------------------------ consensus_70#0 TGGCGGCCAACCCGGCCAGCTCCCCACTCAGGGCGTTCGTGGAGCTGCCGATGTACGGCA 600 consensus_70#1 ------------------------------------------------------------ consensus_70#0 TGGACCGCGACACGCCGGCGCTCAACTCCCTCCTCTCCGCGCTCTGCCGCGCCTCCCGCC 660 consensus_70#1 ------------------------------------------------------------ consensus_70#0 TGGACGACGCCCGCGCCGCGATCCCCGTGGCGCGCGCCGAGGCCGGCACCCGCCCCGACG 720 consensus_70#1 ------------------------------------------------------------ consensus_70#0 CCGACTCCTACGCCATCCTTCTGGAGGGCTGCGAGGCTGCCGGCGACCCTCACGTTGCAC 780 consensus_70#1 ------------------------------------------------------------ consensus_70#0 GCGAGGTGTTCGACGAGATGCGGCACGTCATCGGATTCGATCCTGCCAATGTTCCTGCCT 840 consensus_70#1 ------------------------------------------------------------ consensus_70#0 ATGATTCTTTCCTCACTACACTGATTTCAAGTGGTTCCTCCACAGCGTTAATGGATGCGA 900 consensus_70#1 ------------------------------------------------------------ consensus_70#0 TGGACTATCTTGCTATCTTGCACCGGCAGAGGTGCTCACCTGGGGAGAAGTTCTTCCGCG 960 consensus_70#1 ------------------------------------------------------------ consensus_70#0 CCGCACTGGCCGCACACCTCAAGGCGCGTGAATTGCGCGGCGCGGTGGTGCTCTGGAACG 1020 consensus_70#1 ------------------------------------------------------------ consensus_70#0 ACTTTGTCGTAAGGCGGGGACTCATCCCAGATAAGGAAATGTATAGCACAATGATCATGC 1080 consensus_70#1 ------------------------------------------------------------ consensus_70#0 TGCAGGGCACTCTTGGGCATCCTGAGGTGATTGTTGAGTACCTTGATGAGATGACCTTTG 1140 consensus_70#1 ------------------------------------------------------------ consensus_70#0 ATGGAGTGTTTCCAGATGCGGACACATACAATATGGTTTTCCAGTTCTTGCTGAAGGGGA 1200 consensus_70#1 ------------------------------------------------------------ consensus_70#0 GGAAACTCCGGGAGGCGTCGGCAATATTTAGTGAGATGGTCAAGAACGAGTTCTGGCCCA 1260 consensus_70#1 ------------------------------------------------------------ consensus_70#0 ATGAGGCAAATTGTTCGCTCGCGCTTCGTATGTTCTTGGATACACGAGACTGGGATTCAG 1320 consensus_70#1 ------------------------------------------------------------ consensus_70#0 GGATCAAGTTGTGGAAATGCATGGTGGAGAATGGGCTTCCACCATTGGAGGAGAGTGGGA 1380 consensus_70#1 ------------------------------------------------------------ consensus_70#0 ACATGCTCGTATCAAAGCTAAAGGATGAGAGGTTACCCGAGGCATGTAAATATGCAGAAG 1440 consensus_70#1 -------------------------------------------------------AGAGG 5 *** * consensus_70#0 ACATGATTGATCGATGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTC 1500 consensus_70#1 ACGAGACAAG--GGGGTATCAAGTTGAGCTCTTCCACAATGTCAAAGCTGAAGCAATGTT 63 ** ** * ******************************************** consensus_70#0 TGATGAAGGTTTATAAAGGACATATCCACGATCACCTACTTAGAAAATGGAAGGCGCACT 1560 consensus_70#1 TGATGAAGGTTTATAAAGGACATATCCCCGATCACCTACTTAGAAAATGGAAGGCGCCCT 123 *************************** ***************************** ** consensus_70#0 AGGTATTTTTACCTCTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTG 1620 consensus_70#1 AGGTATTTTTACCTTTTCTTTGTGGTTAAATATAACAGGGGAAGAAAAGCTAACATTTTG 183 ************** ********************************************* consensus_70#0 CCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGTTGCAACTGCAACTATAGGA 1680 consensus_70#1 CCCCCAAGTAGCTGAGTAGCGGTTGATGGTGATTTTCTGGCTGCAACTGCAACTATAGGA 243 **************************************** ******************* consensus_70#0 ACATTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAA 1740 consensus_70#1 ACCTTATGCGCATAGCATCAGTAAAAGTTGCAAAGCATTGGCTCAAAGCTAGGTGTACAA 303 ** ********************************************************* consensus_70#0 TGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTT--- 1797 consensus_70#1 TGTAGTGACATATTTGGTAAGGTAGTTTGGTAAATTAAACTTGACTCTCCTAATGTTTTT 363 ********************************************************* consensus_70#0 -------------------------------------- consensus_70#1 CTTTTGCATGCGTTTCTTGCGTAGAAAAAAAAAAAAAA 401 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||