cluster # 7005

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Oryza sativa
cluster # 7005 cluster # 7005 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7005#0 length = 855 sequences # 1

consensus_7005#1 length = 780 sequences # 2
consensus_7005#2 length = 450 sequences # 1

consensusID : consensus_7005#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 855
fasta sequence

                              [AGCAAAGCACTTGTAGAAAAATGAAGATCAAGCTTGATTTCCACATGATTAAGGGGGATGGTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGTTTGTACCAATGAATCCTTTCTCCCCGCTAAATTTAATTTTGGCATGCCTTCTATTATTTTTTACTTTTGTTGAACAACACTCATCACATGCTCTGGGTATATATATGAGCCTATATTGGGATGTTTTATGACTATCAGATACACAATGCACTGGGTGTGGCACAATAATTCTAATGTTTAATTTTCACTGTTATTTTTTGTTTATGGATAAGCTAGTACTAACAATATTTACACTTGCTCTTGATATTAAGGAGTACTAGCTTATTGAACTAACACTGTATTAATATGGTCATGCGTGCATGTATACTAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTGGATGACCGTATTTATTTGTTCA]

[+] EMBL CB675955             [AGCAAAGCACTTGTAGAAAAATGAAGATCAAGCTTGATTTCCACATGATTAAGGGGGATGGTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGTTTGTACCAATGAATCCTTTCTCCCCGCTAAATTTAATTTTGGCATGCCTTCTATTATTTTTTACTTTTGTTGAACAACACTCATCACATGCTCTGGGTATATATATGAGCCTATATTGGGATGTTTTATGACTATCAGATACACAATGCACTGGGTGTGGCACAATAATTCTAATGTTTAATTTTCACTGTTATTTTTTGTTTATGGATAAGCTAGTACTAACAATATTTACACTTGCTCTTGATATTAAGGAGTACTAGCTTATTGAACTAACACTGTATTAATATGGTCATGCGTGCATGTATACTAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTGGATGACCGTATTTATTTGTTCA]




>consensus_7005#0
AGCAAAGCACTTGTAGAAAAATGAAGATCAAGCTTGATTTCCACATGATTAAGGGGGATG
GTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGTTTGTACCAATGAATCCTTTCTCC
CCGCTAAATTTAATTTTGGCATGCCTTCTATTATTTTTTACTTTTGTTGAACAACACTCA
TCACATGCTCTGGGTATATATATGAGCCTATATTGGGATGTTTTATGACTATCAGATACA
CAATGCACTGGGTGTGGCACAATAATTCTAATGTTTAATTTTCACTGTTATTTTTTGTTT
ATGGATAAGCTAGTACTAACAATATTTACACTTGCTCTTGATATTAAGGAGTACTAGCTT
ATTGAACTAACACTGTATTAATATGGTCATGCGTGCATGTATACTAGGGAAAAGCCATTC
TTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTC
GGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCT
CTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCC
CCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCC
AGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAAC
ATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCA
ATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTGGATGACC
GTATTTATTTGTTCA

consensusID : consensus_7005#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 780
fasta sequence

                              [GATGATTAAGGGCGGATGGTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACATTTACAGTGATTTTGCCTCCCATTATCTTTTTACAGACCACAAAATCACTTACTAAAGATTTTTGATTTAGAATAAAAAAATATTTCATGATTCTTTTATTATCTTACACAATAGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAACCGACCAATGTACGGCCCTTCTGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTTGTTCGACATCATAGACATCCGGGCCTTTGATTTAACTTTTGATCCCATAGACAA]

[+] EMBL CB678389             [GATGATTAAGGGCGGATGGTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACATTTACAGTGATTTTGCCTCCCATTATCTTTTTACAGACCACAAAATCACTTACTAAAGATTTTTGATTTAGAATAAAAAAATATTTCATGATTCTTTTATTATCTTAC                                                                                                                                                            ]
[+] EMBL CB675167             [                               CGCAAACATTTCTAGTACCCAGGGAAAAGCCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACATTTACAGTGATTTTGCCTCCCATTATCTTTTTACAGACCACAAAATCACTTACTAAAGATTTTTGATTTAGAATAAAAAAATATTTCATGATTCTTTTATTATCTTACACAATAGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAACCGACCAATGTACGGCCCTTCTGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTTGTTCGACATCATAGACATCCGGGCCTTTGATTTAACTTTTGATCCCATAGACAA]




>consensus_7005#1
GATGATTAAGGGCGGATGGTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGGAAAAG
CCATTCTTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTC
AACCTCGGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCT
TTATCTCTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGG
AGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACA
ATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGC
TACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCC
CTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCC
CAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACATTTACAGTGATTTTGCCTCCCATT
ATCTTTTTACAGACCACAAAATCACTTACTAAAGATTTTTGATTTAGAATAAAAAAATAT
TTCATGATTCTTTTATTATCTTACACAATAGGGTCGTGTGGAGAAGGAGAAGCTGGACTC
TTTCAACCGACCAATGTACGGCCCTTCTGTGGATGAGCTGAAGCAGCTGGTACAAGAGAG
CCAGTTGTTCGACATCATAGACATCCGGGCCTTTGATTTAACTTTTGATCCCATAGACAA

consensusID : consensus_7005#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [CCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGACTTCAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCGGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACATTTACGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAACCGACCAATGTACGGCCCTTCCGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTTGTTCGACATCATAGACATCCGGACCTTTGATTTAACTTTTGATCCCATA]

[+] EMBL CA764307             [CCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGACTTCAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCGGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACATTTACGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAACCGACCAATGTACGGCCCTTCCGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTTGTTCGACATCATAGACATCCGGACCTTTGATTTAACTTTTGATCCCATA]




>consensus_7005#2
CCCCTGCTAACAACAACAATAGGGAGTGCCCCATGGAGGTCCAATTCTTCCTCAATGACC
TACCCAACAATGACTTCAACCACAATTTCCAGTTGCTAGAGCAATTCAAGCAGTCAATAG
TGCGAGATTGTGCTCGCGGAGGGCTACAACATCCTCCATACTACGTTGCTGGCGTGCCAG
GATCTTTCTACACCAGGCTCTTCCCTTGCAATAGTGTCCATATCTTCCACTCATCCTTCA
GCCTCATGTGGCTCTCTCAGGTCCCAGATCTTCTTGGTAGCAGCATGAACAAAGGGAACA
TTTACGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAACCGACCAATGTACGGCCCT
TCCGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTTGTTCGACATCATAGACATC
CGGACCTTTGATTTAACTTTTGATCCCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7005#1      ------------------------------------------------------------
consensus_7005#2      ------------------------------------------------------------
consensus_7005#0      AGCAAAGCACTTGTAGAAAAATGAAGATCAAGCTTGATTTCCACATGATTAAGGGGGATG 60
                                                                                  

consensus_7005#1      ------------------------------------------------------------
consensus_7005#2      ------------------------------------------------------------
consensus_7005#0      GTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGTTTGTACCAATGAATCCTTTCTCC 120
                                                                                  

consensus_7005#1      ------------------------------------------------------------
consensus_7005#2      ------------------------------------------------------------
consensus_7005#0      CCGCTAAATTTAATTTTGGCATGCCTTCTATTATTTTTTACTTTTGTTGAACAACACTCA 180
                                                                                  

consensus_7005#1      ------------------------------------------------------------
consensus_7005#2      ------------------------------------------------------------
consensus_7005#0      TCACATGCTCTGGGTATATATATGAGCCTATATTGGGATGTTTTATGACTATCAGATACA 240
                                                                                  

consensus_7005#1      ------------------------------------------------------------
consensus_7005#2      ------------------------------------------------------------
consensus_7005#0      CAATGCACTGGGTGTGGCACAATAATTCTAATGTTTAATTTTCACTGTTATTTTTTGTTT 300
                                                                                  

consensus_7005#1      ------------------------------------------------------GATGAT 6
consensus_7005#2      ------------------------------------------------------------
consensus_7005#0      ATGGATAAGCTAGTACTAACAATATTTACACTTGCTCTTGATATTAAGGAGTACTAGCTT 360
                                                                                  

consensus_7005#1      TAAGGGCGGATGGTGACTCAAGCTACGCAAAGAACTCTAGTACCCAGGGAAAAGCCATTC 66
consensus_7005#2      ------------------------------------------------------------
consensus_7005#0      ATTGAACTAACACTGTATTAATATGGTCATGCGTGCATGTATACTAGGGAAAAGCCATTC 420
                                                                                  

consensus_7005#1      TTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTC 126
consensus_7005#2      ------------------------------------------------------------
consensus_7005#0      TTTCAACCAAACCAATGGTTGAGAAAGCCACGAAAGAAATATGCATGGATCTTCAACCTC 480
                                                                                  

consensus_7005#1      GGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCT 186
consensus_7005#2      ------------------------------------------------------------
consensus_7005#0      GGTCAATGGTCGTAGCTGACCTAGGATGCTCCTCTGGTGCAAACACGCTCCTCTTTATCT 540
                                                                                  

consensus_7005#1      CTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCC 246
consensus_7005#2      ------------------------------CCCCTGCTAACAACAACAATAGGGAGTGCC 30
consensus_7005#0      CTGAGGTCATTGCTATCATAAGTGAAGAAACCCCTGCTAACAACAACAATAGGGAGTGCC 600
                                                    ******************************

consensus_7005#1      CCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCC 306
consensus_7005#2      CCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGACTTCAACCACAATTTCC 90
consensus_7005#0      CCATGGAGGTCCAATTCTTCCTCAATGACCTACCCAACAATGATTTGAACCACAATTTCC 660
                      ******************************************* ** *************

consensus_7005#1      AGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAAC 366
consensus_7005#2      AGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCGGAGGGCTACAAC 150
consensus_7005#0      AGTTGCTAGAGCAATTCAAGCAGTCAATAGTGCGAGATTGTGCTCGCAGAGGGCTACAAC 720
                      *********************************************** ************

consensus_7005#1      ATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCA 426
consensus_7005#2      ATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCA 210
consensus_7005#0      ATCCTCCATACTACGTTGCTGGCGTGCCAGGATCTTTCTACACCAGGCTCTTCCCTTGCA 780
                      ************************************************************

consensus_7005#1      ATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATC 486
consensus_7005#2      ATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTCCCAGATC 270
consensus_7005#0      ATAGTGTCCATATCTTCCACTCATCCTTCAGCCTCATGTGGCTCTCTCAGGTGGATGACC 840
                      ****************************************************    ** *

consensus_7005#1      TTCTTGGTAGCAGCATGAACAAAGGGAACATTTACAGTGATTTTGCCTCCCATTATCTTT 546
consensus_7005#2      TTCTTGGTAGCAGCATGAACAAAGGGAACATTTAC------------------------- 305
consensus_7005#0      GTATTTATTTGTTCA--------------------------------------------- 855
                       * **  *     **                                             

consensus_7005#1      TTACAGACCACAAAATCACTTACTAAAGATTTTTGATTTAGAATAAAAAAATATTTCATG 606
consensus_7005#2      ------------------------------------------------------------
consensus_7005#0      ------------------------------------------------------------
                                                                                  

consensus_7005#1      ATTCTTTTATTATCTTACACAATAGGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAA 666
consensus_7005#2      ------------------------GGGTCGTGTGGAGAAGGAGAAGCTGGACTCTTTCAA 341
consensus_7005#0      ------------------------------------------------------------
                                                                                  

consensus_7005#1      CCGACCAATGTACGGCCCTTCTGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTT 726
consensus_7005#2      CCGACCAATGTACGGCCCTTCCGTGGATGAGCTGAAGCAGCTGGTACAAGAGAGCCAGTT 401
consensus_7005#0      ------------------------------------------------------------
                                                                                  

consensus_7005#1      GTTCGACATCATAGACATCCGGGCCTTTGATTTAACTTTTGATCCCATAGACAA 780
consensus_7005#2      GTTCGACATCATAGACATCCGGACCTTTGATTTAACTTTTGATCCCATA----- 450
consensus_7005#0      ------------------------------------------------------