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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2316 fasta sequence
[AAGTACTCATTTCTCGCATTCTCATCGAACCAGTTAAGGGACAAGTCAGCTTGGTTCTTTGCCGAGGACAGAAAGACAACGGTGGAAGCAATTAGGAAGTGGATGGGACGGTTCACAAGTAAGAATGTTGCGAAGCATGCTGCTCGAATGGGGCAGTGCTTCTCATCCACATATGCAACTGTGACAATGCGGCCGGATGAGGTTGATGAGAGTTTTGATGATGTTGTGCATAATGAGTACATTTTCTCCGATGGAATTGGCAAAATTACCCCAGATCTTGCATTGGAAGTTGCCGAGAGGCTGCAGCTGACAGATAACCCGCCATCTGCTTATCAGATCAGGTTTGCTGGCTTCAAGGGTGTCATAGCTGTCTGGCAAGGACATGGTGATGGGACACGGCTTTTCCTGAGGCCAAGCATGAGGAAGTTTGAGTCTAACCATTTGGTGTTAGAGGTGGTCTCCTGGACAAAGTTCCAGCCAGGATTCTTAAATCGACAGATTATAATATTGCTATCCTCACTGAATGTCCCAGATTCTATCTTTTGGCAAATGCAAGAGACCATGCTTTCTAACCTCAACAATATTCTATCA-ACAGAGATGTTGCTTTTGAGGTTTTAACAACTTCATGTGCTGATGATGGAAACACTGCAGCATTGATGCTCAGTGCTGGCTTTGAACCTAGAACTGAACCACACTTGAAAGCAATGCTCTTGGCTATAAGGTCTGCACAATTGCAGGATCTTTTGGAAAAAGCAAGGATATTTGTGCCAAAGGGAAGGTGGTTGATGGGCTGTCTTGATGAGCTTGGGGTTCTTGAGCAAGGGCAGTGCTTTATTCGGGCAACAGTTCCATCATTGAATAGTTATTTTGTTAAGCATGGGTCAAGATTTTCATCAACAGATAAAAACACAGAGGTCATTTTGGGAACTGTGGTAATAGCAAAGAATCCCTGTCTTCATCCAGGGGATGTCCGCATCCTTGAAGCAGTTGATGTGCCCGAACTGCATCATCTGGTTGATTGTTTGGTGTTCCCCCAGAAAGGTGAGAGGCCACATGCTAACGAGGCATCTGGGAGCGATCTTGATGGGGATCTCTACTTTGTGACATGGGATGAGAAACTTATACCTCCAGGCAAGAAGAGCTGGAACCCTATGGACTACTCCCCACCTGAAGCAAAACAACTTCCGCGCCAAGTATCTCAACATGATATCATTGATTTCTTCTTAAAGAACATGATAAGNGAGAATC-TGGGANGATCTGGAANGCTCATGGTGGTCATGCTGATCTTANCGAGGATGGGGC-ATGGATGAAAAGTGTATTCACTTAGCTGAGCTAGCAGCAACTGCCGTGGACTTCCCCAAGACTGGCAAACTTGCGATAATGCCACCACACCTTAAACCAAAAGTCTACCCTGACTTCATGGGAAAGGAAGATGGACAATCTTATAAATCAGAAAAGATTCTTGGAAGGCTTTATCGTTCAATCCAAGAGGCCTCCAATGGTGATGTGGTGTCACAAGAGGTTTGCACTCCAAATGATCTGCCTTATGACATAGATCTGGAAGTTCCTGGTGCATCAGATTTCCTCGCGAGTGCTTGGCAATGCAAGTGTTCATACGACGCGCAGCTGAGTGCGCTGCTCAGTCAGTACAGGGTCCGCACTGAAGCTGAACTTGTGACAGGGCACATAACGTTCCTTGTTAAGAACAGCAGCAAGAAGCAAGGCGACATAAAGGACAGGCTGAAGACTGCTTACTCTGCACTACGCAAGGAGTTCAAAAGTACCTTTGAGAGCATAGCATCGGATCAATGCGAGATTGGTGATGACGAGAAGAATCTGCTGTACGAGATGAAGGCCTCTGCCTGGTACCAGGTGACCTATCACCCCAAATGGGTGGAGAAGTCGAGGGGCATTCTGGGCCCAGATGGTGAGGAAATACCGGCAAGCCTTAGCTTTGCATGGATCCCGGTGGATTACTTGGCGCGGATAAAGCTAAGGTGCCATGGTAAAGTGAGAGTTGAAGGCCAAAAGCCTGTTGAAAGGCTTGCAGCATACATCTCCGAGAGGATATGATGAAACAATGCAAAGGTCGCAGTAAGACCACTCTGCCATTCGTAATGCCGGTTCAAAGGGCATGCGTACAAAATATCTGAGTTTTTTTTTCTTTTCATTTTTGTTCACTTCACTGAACTTGATCTCCCGAATGTTTCAGTGTGCTTTTGTTCCTTCTTACATGCCCCTCAAGCCTGAAAAACTGTACGTTTCAGTTGAGGGCTGTCTATATTATGAAATGCACAAATATACGCTGCCTGCAGC]
[+] EMBL BF430465 [AAGTACTCATTTCTCGCATTCTCATCGAACCAGTTAAGGGACAAGTCAGCTTGGTTCTTTGCCGAGGACAGAAAGACAACGGTGGAAGCAATTAGGAAGTGGATGGGACGGTTCACAAGTAAGAATGTTGCGAAGCATGCTGCTCGAATGGGGCAGTGCTTCTCATCCACATATGCAACTGTGACAATGCGGCCGGATGAGGTTGATGAGAGTTTTGATGATGTTGTGCATAATGAGTACATTTTCTCCGATGGAATTGGCAAAATTACCCCAGATCTTGCATTGGAAGTTGCCGAGAGGCTGCAGCTGACAGATAACCCGCCATCTGCTTATCAGATCAGGTTTGCTGGCTTCAAGGGTGTCATAGCTGTCTGGCAAGGACATGGTGATGGGACACGGCTTTTCCTGAGGCCAAGCATGAGGAAGTTTGAGTCTAACCATTTGGTGTTAGAGGTGGTCTCCTGGACAAAGTTCCAGCCAGGATTCTTAAATCGACAGATTATAATATTGCTATCCTCACTGAATGTCCCAGATTCTATCTTTTGGCAAATGCAAGAGACCATGCTTTCTAACCTCAACAATATTCTATCA ACAGAGATGTTGCTTTTGAGGTTTTAACAACTTCATGTGCTGATGATGGAAACACTGCAGCATTGATGCTCAGTGCTGGC ]
[+] EMBL CA765940 [ AGGTGGTCTCCTGGACAAAGTTCCAGCCAGGATTCTTAAATCGACAGATTATAATATTGCTATCCTCACTGAATGTCCCAGATTCTATCTTTTGGCAAATGCAAGAGACCATGCTTTCTAACCTCAACAATATTCTATCAGACAGAGATGTTGCTTTTGAGGTTTTAACAACTTCATGTGCTGATGATGGAAACACTGCAGCATTGATGCTCAGTGCTGGCTTTGAACCTAGAACTGAACCACACTTGAAAGCAATGCTCTTGGCTATAAGGTCTGCACAATTGCAGGATCTTTTGGAAAAAGCAAGGATATTTGTGCCAAAGGGAAGGTGGTTGATGGGCTGTCTTGATGAGCTTGGGGTTCTTGAGCAAGGGCAGTGCTTTATTCGGGCAACAGTTCCATCATTGAATAGTTATTTTGTTAAGCATGGGTCAAGATTTTCATCAACAGATAAAAACACAGAGGTCATTTTGGGAACTGTGGTAATAGCAAAGAATCCCTGTCTTCATCCAGGGGATGTCCGCATCCTTGAAGCAGTTGATGTGCCCGAACTGCATCATCTGGTTGATTGTTTGGTGTTCCCCCAGAAAGGTGAGAGGCCACATGCTAACGAGGCATCTGGGAGCGATCTTGATGGGGATCTCTACTTTGTGACATGGGATGAGAAACTTATACCTCCAGGCAAGAAGAGCTGGAACCCTATGGACTACTCCCCACCTGAAGCAAAACAACTTCCGCGCCAAGTATCTCAACATGATATCATTGATTTCTTCTTAAAGAACATGATAAGNGAGAATC TGGGANGATCTGGAANGCTCATGGTGGTCATGCTGATCTTANCGAGGATGGGGC ATGGATGAAAAG ]
[+] EMBL AK108380 [ tACTGTGGTAATAGCAAAG ATCCCTGTCTTCATCCAGGGGATGTCCGCGTCCTTGAAGCAGTTGATGTGCCCGAACTGCATCATCTGGTTGATTGTTTGGTGTTCCCCCAGAAAGGTGAGAGGCCACATGCTAACGAGGCATCTGGGAGCGATCTTGATGGGGATCTCTACTTTGTGACATGGGATGAGAAACTTATACCTCCAGGCAAGAAGAGCTGGAACCCTATGGACTACTCCCCACCTGAAGCAAAACAACTTCCGCGCCAAGTATCTCAACATGATATCATTGATTTCTTCTTAAAGAACATGATAAGTGAGAATCTTGGTAGGATCTGTAATGCTCATGTTGTTCATGCTGATCTTAGCGAGTATGGTGCAATGGATGAGAAGTGTATTCACTTAGCTGAGCTAGCAGCAACTGCCGTGGACTTCCCCAAGACTGGCAAACTTGCGATAATGCCACCACACCTTAAACCAAAAGTCTACCCTGACTTCATGGGAAAGGAAGATGGACAATCTTATAAATCAGAAAAGATTCTTGGAAGGCTTTATCGTTCAATCCAAGAGGCCTCCAATGGTGATGTGGTGTCACAAGAGGTTTGCACTCCAAATGATCTGCCTTATGACATAGATCTGGAAGTTCCTGGTGCATCAGATTTCCTCGCGAGTGCTTGGCAATGCAAGTGTTCATACGACGCGCAGCTGAGTGCGCTGCTCAGTCAGTACAGGGTCCGCACTGAAGCTGAACTTGTGACAGGGCACATAACGTTCCTTGTTAAGAACAGCAGCAAGAAGCAAGGCGACATAAAGGACAGGCTGAAGACTGCTTACTCTGCACTACGCAAGGAGTTCAAAAGTACCTTTGAGAGCATAGCATCGGATCAATGCGAGATTGGTGATGACGAGAAGAATCTGCTGTACGAGATGAAGGCCTCTGCCTGGTACCAGGTGACCTATCACCCCAAATGGGTGGAGAAGTCGAGGGGCATTCTGGGCCCAGATGGTGAGGAAATACCGGCAAGCCTTAGCTTTGCATGGATCCCGGTGGATTACTTGGCGCGGATAAAGCTAAGGTGCCATGGTAAAGTGAGAGTTGAAGGCCAAAAGCCTGTTGAAAGGCTTGCAGCATACATCTCCGAGAGGATATGATGAAACAATGCAAAGGTCGCAGTAAGACCACTCTGCCATTCGTAATGCCGGTTCAAAGGGCATGCGTACAAAATATCTGAGTTTTTTTTTCTTTTCATTTTTGTTCACTTCACTGAACTTGATCTCCCGAATGTTTCAGTGTGCTTTTGTTCCTTCTTACATGCCCCTCAAGCCTGAAAAACTGTACGTTTCAGTTGAGGGCTGTCTATATTATGAAATGCACAAATATACGCTGCCTGCAGC]
consensusID : consensus_7008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CGAGACAAGGGGGGGCACATAACGTCCCTTGTTAAGAACAGCAGCAAGAAGCAAGGCGACATAAAGGACAGGCTGAAGACTGCTTACTCTGCACTACGCAAGGAGTTCAAAAGTACCTTCGAGAGCATAGCATCGGATCAATGCGAGATTGATGATGACGAGAAGAATCTGCTGTACGAGATGAAGGCCTCTGCCTGGTACCAGGTGACCTATCACCCCAAATGGGTGGAGAAGTCGAGGGGCATTCTGGGCCCAGATGGTGAGGAAATACCGGCAAGCCTTAGCTTTGCATGGATCCCGGTGGATTACTTGGCGCGGATAAAGCTAAGGTGCCATGGTAAAGTGAGAGTTGAAGGCCAAAAGCCTGTTGAAAGGCTTGCAGCATACATCTCCGAGAGGATATGATGAAACAATGCAAAGGTCGCAGTAAGACCACTCTGCCATTCGTAATGCCGGTTCAAAGGGCATGCGTACAAAATATCTGAGTTTTTTTTCTTTTCATTTTTGTTCACTTCACTGAACTTGATCTCCCGAATGNTTCAGTGTGCTTTTGTTCCTCCTTACATGCCCCTCAAGCCTGAAAAACTGTACGTTTCAGTTGAGGGCTGTCTATATTATGAAATGCACAA]
[+] EMBL CB096720 [CGAGACAAGGGGGGGCACATAACGTCCCTTGTTAAGAACAGCAGCAAGAAGCAAGGCGACATAAAGGACAGGCTGAAGACTGCTTACTCTGCACTACGCAAGGAGTTCAAAAGTACCTTCGAGAGCATAGCATCGGATCAATGCGAGATTGATGATGACGAGAAGAATCTGCTGTACGAGATGAAGGCCTCTGCCTGGTACCAGGTGACCTATCACCCCAAATGGGTGGAGAAGTCGAGGGGCATTCTGGGCCCAGATGGTGAGGAAATACCGGCAAGCCTTAGCTTTGCATGGATCCCGGTGGATTACTTGGCGCGGATAAAGCTAAGGTGCCATGGTAAAGTGAGAGTTGAAGGCCAAAAGCCTGTTGAAAGGCTTGCAGCATACATCTCCGAGAGGATATGATGAAACAATGCAAAGGTCGCAGTAAGACCACTCTGCCATTCGTAATGCCGGTTCAAAGGGCATGCGTACAAAATATCTGAGTTTTTTTTCTTTTCATTTTTGTTCACTTCACTGAACTTGATCTCCCGAATGNTTCAGTGTGCTTTTGTTCCTCCTTACATGCCCCTCAAGCCTGAAAAACTGTACGTTTCAGTTGAGGGCTGTCTATATTATGAAATGCACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7008#0 AAGTACTCATTTCTCGCATTCTCATCGAACCAGTTAAGGGACAAGTCAGCTTGGTTCTTT 60
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GCCGAGGACAGAAAGACAACGGTGGAAGCAATTAGGAAGTGGATGGGACGGTTCACAAGT 120
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 AAGAATGTTGCGAAGCATGCTGCTCGAATGGGGCAGTGCTTCTCATCCACATATGCAACT 180
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GTGACAATGCGGCCGGATGAGGTTGATGAGAGTTTTGATGATGTTGTGCATAATGAGTAC 240
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 ATTTTCTCCGATGGAATTGGCAAAATTACCCCAGATCTTGCATTGGAAGTTGCCGAGAGG 300
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 CTGCAGCTGACAGATAACCCGCCATCTGCTTATCAGATCAGGTTTGCTGGCTTCAAGGGT 360
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GTCATAGCTGTCTGGCAAGGACATGGTGATGGGACACGGCTTTTCCTGAGGCCAAGCATG 420
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 AGGAAGTTTGAGTCTAACCATTTGGTGTTAGAGGTGGTCTCCTGGACAAAGTTCCAGCCA 480
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GGATTCTTAAATCGACAGATTATAATATTGCTATCCTCACTGAATGTCCCAGATTCTATC 540
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 TTTTGGCAAATGCAAGAGACCATGCTTTCTAACCTCAACAATATTCTATCAACAGAGATG 600
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 TTGCTTTTGAGGTTTTAACAACTTCATGTGCTGATGATGGAAACACTGCAGCATTGATGC 660
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 TCAGTGCTGGCTTTGAACCTAGAACTGAACCACACTTGAAAGCAATGCTCTTGGCTATAA 720
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GGTCTGCACAATTGCAGGATCTTTTGGAAAAAGCAAGGATATTTGTGCCAAAGGGAAGGT 780
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GGTTGATGGGCTGTCTTGATGAGCTTGGGGTTCTTGAGCAAGGGCAGTGCTTTATTCGGG 840
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 CAACAGTTCCATCATTGAATAGTTATTTTGTTAAGCATGGGTCAAGATTTTCATCAACAG 900
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 ATAAAAACACAGAGGTCATTTTGGGAACTGTGGTAATAGCAAAGAATCCCTGTCTTCATC 960
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 CAGGGGATGTCCGCATCCTTGAAGCAGTTGATGTGCCCGAACTGCATCATCTGGTTGATT 1020
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GTTTGGTGTTCCCCCAGAAAGGTGAGAGGCCACATGCTAACGAGGCATCTGGGAGCGATC 1080
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 TTGATGGGGATCTCTACTTTGTGACATGGGATGAGAAACTTATACCTCCAGGCAAGAAGA 1140
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GCTGGAACCCTATGGACTACTCCCCACCTGAAGCAAAACAACTTCCGCGCCAAGTATCTC 1200
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 AACATGATATCATTGATTTCTTCTTAAAGAACATGATAAGNGAGAATCTGGGANGATCTG 1260
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GAANGCTCATGGTGGTCATGCTGATCTTANCGAGGATGGGGCATGGATGAAAAGTGTATT 1320
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 CACTTAGCTGAGCTAGCAGCAACTGCCGTGGACTTCCCCAAGACTGGCAAACTTGCGATA 1380
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 ATGCCACCACACCTTAAACCAAAAGTCTACCCTGACTTCATGGGAAAGGAAGATGGACAA 1440
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 TCTTATAAATCAGAAAAGATTCTTGGAAGGCTTTATCGTTCAATCCAAGAGGCCTCCAAT 1500
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GGTGATGTGGTGTCACAAGAGGTTTGCACTCCAAATGATCTGCCTTATGACATAGATCTG 1560
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GAAGTTCCTGGTGCATCAGATTTCCTCGCGAGTGCTTGGCAATGCAAGTGTTCATACGAC 1620
consensus_7008#1 ------------------------------------------------------------
consensus_7008#0 GCGCAGCTGAGTGCGCTGCTCAGTCAGTACAGGGTCCGCACTGAAGCTGAACTTGTGACA 1680
consensus_7008#1 ------------------------------------------------CGAGACAAGGGG 12
* *
consensus_7008#0 GGGCACATAACGTTCCTTGTTAAGAACAGCAGCAAGAAGCAAGGCGACATAAAGGACAGG 1740
consensus_7008#1 GGGCACATAACGTCCCTTGTTAAGAACAGCAGCAAGAAGCAAGGCGACATAAAGGACAGG 72
************* **********************************************
consensus_7008#0 CTGAAGACTGCTTACTCTGCACTACGCAAGGAGTTCAAAAGTACCTTTGAGAGCATAGCA 1800
consensus_7008#1 CTGAAGACTGCTTACTCTGCACTACGCAAGGAGTTCAAAAGTACCTTCGAGAGCATAGCA 132
*********************************************** ************
consensus_7008#0 TCGGATCAATGCGAGATTGGTGATGACGAGAAGAATCTGCTGTACGAGATGAAGGCCTCT 1860
consensus_7008#1 TCGGATCAATGCGAGATTGATGATGACGAGAAGAATCTGCTGTACGAGATGAAGGCCTCT 192
******************* ****************************************
consensus_7008#0 GCCTGGTACCAGGTGACCTATCACCCCAAATGGGTGGAGAAGTCGAGGGGCATTCTGGGC 1920
consensus_7008#1 GCCTGGTACCAGGTGACCTATCACCCCAAATGGGTGGAGAAGTCGAGGGGCATTCTGGGC 252
************************************************************
consensus_7008#0 CCAGATGGTGAGGAAATACCGGCAAGCCTTAGCTTTGCATGGATCCCGGTGGATTACTTG 1980
consensus_7008#1 CCAGATGGTGAGGAAATACCGGCAAGCCTTAGCTTTGCATGGATCCCGGTGGATTACTTG 312
************************************************************
consensus_7008#0 GCGCGGATAAAGCTAAGGTGCCATGGTAAAGTGAGAGTTGAAGGCCAAAAGCCTGTTGAA 2040
consensus_7008#1 GCGCGGATAAAGCTAAGGTGCCATGGTAAAGTGAGAGTTGAAGGCCAAAAGCCTGTTGAA 372
************************************************************
consensus_7008#0 AGGCTTGCAGCATACATCTCCGAGAGGATATGATGAAACAATGCAAAGGTCGCAGTAAGA 2100
consensus_7008#1 AGGCTTGCAGCATACATCTCCGAGAGGATATGATGAAACAATGCAAAGGTCGCAGTAAGA 432
************************************************************
consensus_7008#0 CCACTCTGCCATTCGTAATGCCGGTTCAAAGGGCATGCGTACAAAATATCTGAGTTTTTT 2160
consensus_7008#1 CCACTCTGCCATTCGTAATGCCGGTTCAAAGGGCATGCGTACAAAATATCTGAGTTTTTT 492
************************************************************
consensus_7008#0 TTTCTTTTCATTTTTGTTCACTTCACTGAACTTGATCTCCCGAATGTTTCAGTGTGCTTT 2220
consensus_7008#1 TT-CTTTTCATTTTTGTTCACTTCACTGAACTTGATCTCCCGAATGNTTCAGTGTGCTTT 551
** ******************************************* *************
consensus_7008#0 TGTTCCTTCTTACATGCCCCTCAAGCCTGAAAAACTGTACGTTTCAGTTGAGGGCTGTCT 2280
consensus_7008#1 TGTTCCTCCTTACATGCCCCTCAAGCCTGAAAAACTGTACGTTTCAGTTGAGGGCTGTCT 611
******* ****************************************************
consensus_7008#0 ATATTATGAAATGCACAAATATACGCTGCCTGCAGC 2316
consensus_7008#1 ATATTATGAAATGCACAA------------------ 629
******************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||