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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7013#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 809 fasta sequence
[TATCACCCTTTAAAAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTTGATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGTGTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATATACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTACATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAACAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGACCCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAGATATATATATGCTTGTATTGGGTGTGACATGTAATTGGGTTGGATGGGATAGGTCAGTACCACCACTTTGAACGATGAGGGTGATGAGATGATGTTCCAGTTATAT]
[+] EMBL CB646201 [TATCACCCTTTAAAAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTTGATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGTGTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATATACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTACATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAACAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGACCCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAGATATATATATGCTTGTATTGGGTGTGACATGTAATTGGG ]
[+] EMBL CB668213 [ GGTCCTTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTTGATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGTGTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATATACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTACATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAACAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGACCCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAGATATATATATGCTTGTATTGGGTGTGACATGTAATTGGATTGGATGGGATAGGTCAGTACCACCACTTTGAACGATGAGGGTGATGAGATGATGTTCCAGTTATAT]
consensusID : consensus_7013#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 592 fasta sequence
[CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTTATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTGGTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGTTTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATGTTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATT-TGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTAT]
[+] EMBL CB639493 [CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTTATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTGGTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGTTTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATGTTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATT TGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTAT]
[+] EMBL CB638520 [CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTTATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTGGTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGTTTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATGTTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTATGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7013#0 ------------------------------------------------------------
consensus_7013#1 CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTT 60
consensus_7013#0 ------------------------------------------------------------
consensus_7013#1 ATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTG 120
consensus_7013#0 ------------------------------------------------------------
consensus_7013#1 GTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGT 180
consensus_7013#0 ------------------------------------------------------------
consensus_7013#1 TTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATG 240
consensus_7013#0 -----------------TATCACCCTTTAAAAATTTCTCTTTCGAGGTTATTGGTCTCAT 43
consensus_7013#1 TTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCAT 300
****** * *****************************
consensus_7013#0 GACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTC 103
consensus_7013#1 GACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTC 360
************************************************************
consensus_7013#0 TAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTG 163
consensus_7013#1 TAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTG 420
************************************************************
consensus_7013#0 CGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGT 223
consensus_7013#1 CGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGT 480
************************************************************
consensus_7013#0 TGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGT 283
consensus_7013#1 TGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGT 540
************************************************************
consensus_7013#0 CCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTT 343
consensus_7013#1 CCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTAT-------- 592
******************************************** *******
consensus_7013#0 GATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGT 403
consensus_7013#1 ------------------------------------------------------------
consensus_7013#0 GTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATA 463
consensus_7013#1 ------------------------------------------------------------
consensus_7013#0 TACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTAC 523
consensus_7013#1 ------------------------------------------------------------
consensus_7013#0 ATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAA 583
consensus_7013#1 ------------------------------------------------------------
consensus_7013#0 CAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGAC 643
consensus_7013#1 ------------------------------------------------------------
consensus_7013#0 CCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAG 703
consensus_7013#1 ------------------------------------------------------------
consensus_7013#0 ATATATATATGCTTGTATTGGGTGTGACATGTAATTGGGTTGGATGGGATAGGTCAGTAC 763
consensus_7013#1 ------------------------------------------------------------
consensus_7013#0 CACCACTTTGAACGATGAGGGTGATGAGATGATGTTCCAGTTATAT 809
consensus_7013#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||