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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 588 fasta sequence
[TATGTGTTTCCTCTATATTTAGTGGATTATGCATGATTGGAGTGACAATGACTGTGTGAAGATACTTCGGAACTGCAAACATCCCGCGCTTTACTGAAAGCCATCCCATCTAGAGAAGCCGGCGGAAAGGTGATAATCATGGATATAGTGGTCGGAGTTGGCCCATCTGACCAAAAGCACAGAGATGTGCAGATCTTGTTTGACGCGCTCATCATGTTTGTCAATGGCGTTGAGCGAGATGAACAGGAGTGGAAGAAACTTTTCGTTGAAGCTGGATTTAGTAGCTACAAGATCATGCCAGTCATGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGTTACTCATTCTTCAATGAGCAGACGTCCGTTGGCTAGTCTACATCATGTATGTTTATTGGTGTGAAACTAGACAAAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATTGTGATCATTCCAAATAAATAAGTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTACTGTGGAATNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BU572376 [TATGTGTTTCCTCTATATTTAGTGGATTATGCATGATTGGAGTGACAATGACTGTGTGAAGATACTTCGGAACTGCAAACATCCCGCGCTTTACTGAAAGCCATCCCATCTAGAGAAGCCGGCGGAAAGGTGATAATCATGGATATAGTGGTCGGAGTTGGCCCATCTGACCAAAAGCACAGAGATGTGCAGATCTTGTTTGACGCGCTCATCATGTTTGTCAATGGCGTTGAGCGAGATGAACAGGAGTGGAAGAAACTTTTCGTTGAAGCTGGATTTAGTAGCTACAAGATCATGCCAGTCATGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGTTACTCATTCTTCAATGAGCAGACGTCCGTTGGCTAGTCTACATCATGTATGTTTATTGGTGTGAAACTAGACAAAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATTGTGATCATTCCAAATAAATAAGTGTGGTGTAACTTTTTATATA ]
[+] EMBL AU095236 [ GCTAGTCTATACCNTGTATNTTTATTGTTGTGAAACTAGACAAAATTGTGTGTGCTCGCTTGGGTTGTTTGTGATTAATTGTGATCATTCCAAATAAATAAGTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTACTGTGGAATNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 533 fasta sequence
[CTGTCTTCCTC-AAG-TGGA-TTA-TG-CATGA-TTGGAGTGACAATGACTGTGTGAAGATACTTCGGAACTGCAAAAAACCATCCCATCTAGAGAAGCCGGCGGAAAGGTGATAATCATGGA-TATAGTGGTCGGAGTTGGCCCATCTGACCCAAA-GCACCAGAGATGTGCAGATCTTGTTTGA-CGCGC-TCATCATGTTTGTCAATGGCGTTGAGCGAGATG-AACAGGAGTGGAAGAAACTTTTCG-TTGAAGCTGGATTTAG-TAGCTACAAGATCATGCCAGTCACTGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGT-TACTCATTCTTCAATGAGCAGACGTCCGTTGGCTAGTCTACATCA-TGTATGTTTATTGTTGTG-AAACTAGACCAAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATT-GTGATCATTCCCAAATAAATAAGTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTA-CTGTGGAATATATATGCTTGAATCTAAAAAAAA]
[+] EMBL BQ908479 [CTGTCTTCCTC AAG TGGA TTA TG CATGA TTGGAGTGACAATGACTGTGTGAAGATACTTCGGAACTGCAAAAAACCATCCCATCTAGAGAAGCCGGCGGAAAGGTGATAATCATGGA TATAGTGGTCGGAGTTGGCCCATCTGACCCAAA GCACCAGAGATGTGCAGATCTTGTTTGA CGCGC TCATCATGTTTGTCAATGGCGTTGAGCGAGATG AACAGGAGTGGAAGAAACTTTTCG TTGAAGCTGGATTTAG TAGCTACAAGATCATGCCAGTCACTGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGT TACTCATTCTTCAATGAGCAGACGTCCGTTGGCTAGTCTACATCA TGTATGTTTATTGTTGTG AAACTAGACCAAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATT GTGATCATTCCCAAATAAATAAGTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTA CTGTGGAATATATATGCTTGAATCTAAAAAAAA]
[+] EMBL BM038833 [ ctttcCCTCAAAGTTGGATTTATTGNCATGANTTGGAGTGACAATGACTGTGTGAAGATACTTCGGAACTGCAAAAAGCCATCCCATCTAGAGAAGCCGGCGGAAAGGTGATAATCATGGACTATAGTGGTCGGAGTTGGCCCATCTGACCCAAACGCACCAGAGATGTGCAGATCTTGTTTGAGCGCGCGTCATCATGTTTGTCAATGGCGTTGAGCGAGATGCAACAGGAGTGGAAGAAACTTTTCGCTTGAAGCTGGATTTAGCTAGCTACAAGATCATGCCAGTCA TGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGTGTACTCATTCTTCCATGA CCGACGTCCGTTGGCTAGTCTACATCAGNGTATGTTTATTGTTGTGCAAACTAGA CAAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATTGGTGATCATTCC AATAAATAAGTGTGGTGTAACTTTTNATATATAATGGACCACATCCCGCGCTTTACCTGTGGAAaaaaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7032#0 TATGTGTTTCCTCTATATTTAGTGGATTATGCATGATTGGAGTGACAATGACTGTGTGAA 60
consensus_7032#1 --------CTGTCTTCCTCAAGTGGATTATGCATGATTGGAGTGACAATGACTGTGTGAA 52
*** * ****************************************
consensus_7032#0 GATACTTCGGAACTGCAAACATCCCGCGCTTTACTGAAAGCCATCCCATCTAGAGAAGCC 120
consensus_7032#1 GATACTTCGGAACTGCAAA------------------AAACCATCCCATCTAGAGAAGCC 94
******************* ** ********************
consensus_7032#0 GGCGGAAAGGTGATAATCATGGATATAGTGGTCGGAGTTGGCCCATCTGACCAAAAGCAC 180
consensus_7032#1 GGCGGAAAGGTGATAATCATGGATATAGTGGTCGGAGTTGGCCCATCTGACCCAAAGCAC 154
**************************************************** *******
consensus_7032#0 -AGAGATGTGCAGATCTTGTTTGACGCGCTCATCATGTTTGTCAATGGCGTTGAGCGAGA 239
consensus_7032#1 CAGAGATGTGCAGATCTTGTTTGACGCGCTCATCATGTTTGTCAATGGCGTTGAGCGAGA 214
***********************************************************
consensus_7032#0 TGAACAGGAGTGGAAGAAACTTTTCGTTGAAGCTGGATTTAGTAGCTACAAGATCATGCC 299
consensus_7032#1 TGAACAGGAGTGGAAGAAACTTTTCGTTGAAGCTGGATTTAGTAGCTACAAGATCATGCC 274
************************************************************
consensus_7032#0 AGTCA-TGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGTTACTCATTCTTCA 358
consensus_7032#1 AGTCACTGGGCTTCAGGTCAATCATCGAGGTCTATCCTTGAACTTGTTACTCATTCTTCA 334
***** ******************************************************
consensus_7032#0 ATGAGCAGACGTCCGTTGGCTAGTCTACATCATGTATGTTTATTGGTGTGAAACTAGACA 418
consensus_7032#1 ATGAGCAGACGTCCGTTGGCTAGTCTACATCATGTATGTTTATTGTTGTGAAACTAGACC 394
********************************************* *************
consensus_7032#0 AAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATTGTGATCATTCC-AAATAAATAA 477
consensus_7032#1 AAATTGTGTGTGTTCGCTTGGGTTGTTTGTGATTAATTGTGATCATTCCCAAATAAATAA 454
************************************************* **********
consensus_7032#0 GTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTACTGTGGAATNTAAA 537
consensus_7032#1 GTGTGGTGTAACTTTTTATATATAATGGACAACATCCCGCGCTTTACTGTGGAATATATA 514
******************************************************* ** *
consensus_7032#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 588
consensus_7032#1 TGCTTGAATCTAAAAAAAA-------------------------------- 533
** ********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||